LOC120558708 (pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789)


Basic Information

Item Value
gene id LOC120558708
gene name pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14145227 ~ 14185140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799867.1
AGAGTCTTGCAGAGAGAACGCAGGGTCACCTTCTGTCACTACAAGGGGAAATACTGAATAAATTGCAGCATAGGCTATTGGGTAGTGGTGCACctcagcagcatcagcagcatCTCTGGTGATCTCCTGCAGGGGACCAACAGCTCTCTCTCAGGTTTATGGAAACCTGACCTCCCATTGGTGGAGAAGTGCATGAGGAACCCAGCTCTGCTGCAGAGGACAGGTTTAGTCATTAGAGTGCTTTGCCACATCCAGGAAAATGTCTGGCTCCTACGATGAATGTGCAGGTGCTGACGACACCATGGACAGCTTCTGGGAGGTGGGGAACTACAAACGTGCTGTCAAGAGATTTGATGACGGCCATCGGCTCTGCAATGACCTTATGGGCTGCCTGCAGGAACGTGCCAAGATAGAAAAATCCTATGGTGATCAGCTAACGGCATGGTCCAAGAGATGGAGACAGCTCATTGAGAAAGGCCCACAGTACGGCTCAGTGGAGAGAGCCTGGCTGGCTGTCATGACCGAGGCAGAGAAGGTGAGTGAGCTGCACCAAGACGTGAAGAACAACCTGGTGAACGAAGACGTAGAGAAAGTGAAGAACTGGCAGAAGGAAGCCTATCACAAGCAAATGATCGGTGGCTTCAAAGAGGCCAAGGAGGCGGAGGAAGGCTTCAAAAAGGCTCAGAAACCGTGGGCCAAAAAGCTCAAGGAGATGGAAGCAGCTAAGAAATCCTACCACATGGCCTGCAAGGAGGAGAAGCTGGCTGCAGCCCGAGAGGCCAATGGCAAGACTGAGGCTTCTGTCACAGTAGACCAGCAGAAGAAACTCCACGAGAAAGTGGACAAATGCAAACAGGATGTGCAAAAGGCTAAAGAGAAGTACGAGAAGTCTCTGGAGGAGCTGAATAAGTGCACCCCGCAGTACATGGAGTGCATGGAGCAGGTGTTTGACCAGTGCCAGCAGCATGAAGTCAAGAGGCTGACTTTCCTCAAGGAGGCCTTGCTGGACATCAAACGCCATCTTAACCTCACAGAGAACGCAAGCTATGCCACAATATACAGAGAACTGGAGCGCACAATCCTGGGCGCAAACACACAAGAGGACCTGAAGTGGTTCAGCAACAACCACGGCCCTGAGATGCCTATGAACTGGCCTGCATTTGAGGAATACAACCCAGACCAGGCCAGTGCCCctccaaagaagaagaaaccagATGGAGCCCCACCCACTCCGAGCACAGACCATGTGGCTCCACCTGGTGACCGTAGCAGTGTGAGCAGCTATGAAAAAAACCAAGGTTTCTCGACTGAGTGGTCCGATGATGAGCAGCCCACTGCGAACTCTGGCAACGAAAATGGTGGGAACGGGAATTCTTTCGAAGATGACGTCAGCACTACTGGGAAATCGGTCCGCGTCCGCGCTCTCTATGATTATGAAGGCCAGGAACAGGATGAGCTCACCTTCAAAGCAGGTGATGAACTGACCAAGACTGAGGACGAAGATGAGCAAGGCTGGTGTAGAGGTCGCTTGGACAGCGGCCGAGAGGGACTTTACCCGGCCAATTACGTCGAGCCAATCTAGTCCCGCTATTGGACATGGACACGCCATTGGAGGCAGCTCGAACTGTCCCGTCCAATTGCACCGCACATAGCCAGAGACTTAAGAGCAACACATCCCTTGCCCAACAGATGCGCCAAGCAGTCTTGATAAAAACTTAGTAACCTAAAAGACATTATATCAGTATAATATATTTTATCCAGCATTTGTGGTGGGTGGAcctacacatttaaaaacaagagCAGCAGTTGTTCCAGTATATACACACTCAACTATAACATCAAGACAGACAGTGCAGGAACACATTGCTTCTCTGTGTAGCTGTATTTAATGTATAATGCAGCTTATTTAAACTTGCAGTGCACTGCAGTCTGTTCTTATGTGAGAATGGGAAGATAATAGAAACAGTTATACCCATTCGACCAAGACGAGCTTCTCTAACCTGCATTGTGTATATACAGTGTAATGCCATCTTTGTGTAGCATTTTTAATGCTGTGTGTGGTCAGTCATCATTCTTACATCTGGAATGCTGTGTAGTGTTAAAAGTACCACAAACAGTatcctctatttttttttttttcttgtttttttttgtttttcttttgtgattTGGTCCGACCTCTTTTCCAGTGTGTGTAGTGCTATGTGTGATTTAACTGTTTCTGAACTTGCATAGCAGCATGtgctatgcaaaaaaaaaacaaaaaaaacgtgcATTCCCTGAATCCTGCAGCCTCGTTGAGGCTACAACTTGATGCAACACATCAACTGCAAATGCAGAGTTCACTTTTTAGCATCACATTCTTCCGGACATGCTTCTGTTTTCATGAAAGGAAGCTTGCTGATGAAGTGATTTtatgttgtctttgttttgtttttgacatgTTTCTTTTCTTAGCATCACAAACCCGTTGACAGTATCATCTCCATGCAATCCAAGGAAAAGGATACACTGTCTCTGCAGAAGCTTTCATTCTTGGTTCAGTAATTCAGGTGTCATTTTAATCCGCTACTGCTAACAAGAAACACGAGTAATACATTCCCTCAGAGCGAAGCTGGATCAAGTCATCTTACTATACCTGTGCCAGTCACTTTTCTTCCAGAGCGAGGGGCCATTGGAGGCATGTTGATGCGTTACTGTGCTACAGAGGGTTGTCTGAAGATCGAAGCCTCTTCAACAGGACGTGAATGTACCACTGTTTAGGCTTGAAAGAGGGCATATTGTCTAAACATGGTTCTCCACTGTCACTTAAAGCCCTGTCTAGCAAAAAGCACTAGTTATACGGCCCGTTTTCCCTGCTGAGCCAAAGAATGACCCAATACCATCAACTATCCATTTTCTCTCCATGCAATAACAAACAGCTTCAGTGAGGATCATCTTGTAGCTGCTTCCCAATCCACCCAAACTGCATTTGTCTGCAAAACACCGCACAATGACACAGGGAATACATTTGTCACCAGTACTGCACTGCATGTAAGCTGACTCTTACACAGTGCATTACCTGGTTATTTTTAAAGTCTTTAACTTGCTCCATAGGAATTACATTTATAGCAGAAATTGCATTTATCAGATGTTGATTAGTGAGTTATCTTGCTCTAAGTTGCACCTAAATCTCTGATTAGATGGGAGAgatactttttatatatataacgtAGTTGTCCTGAAGTTTTAAAATTTCACTGGACCAACAGCAGTCAGATGTGTTTAGCTCTGTGTCTGGGACAGGATGTGACAGGTTTGGGTCTCACACGTGAGAAGGAACACATCACCAGCTCACAAGTTGTGTCTTAGAGTAAAGCTGTCCAGCATAGCAAAAAGGACTCCTATCATTAAAACTGTCCAACATCCTTGATGTgcgtatgcacacacacacacacacacacacatatacgcacgcacgcacgcatacacacgcatgcatacaaacacacatgcattaaacacacactatacacaacaCGCAGGTTCAAACACATAATCCACATAACCAGGTTAACATTTTGGGGAAAAACCTCTTCATCATCCAGTGTGTATGAGTTGTGTAAATgtaacagaaaaagaaatgtaaaaaaaaaacaaaaaaaaaatgcaagtgaTTGACTATTAAGACAAAATGTAGTGTTATACATGTAAATGTGATTCATAAAAATAACAGCAATGGAAAACATATTAAGTAATAGGTACCATATCGTATGAATTTCATTGCAATGGAATTGTCAGTGTATCATAAAAGCGTGACGTTATCCCACGCTGTCAGATTTGTATATGATGATGTAATTTAAAGATTATATTCTATTGTAACTGTACAACTGTGTTGAGTTGAGAAATGAGACCTGACCATGTTGAGGCAGTAAAAAGGTGTACATGTAAATGCTTTTTTATGTTGATGATCTTTTCCTTATGCacacaggggacagcagctcATGTTGTGGAAACCCTATATTAGCGGTCTAGAAGATGTATGTTCATAGTTAGTGATGTACTTTTATCTCCTAACTGGTGTAGTGCCTGTTCATCTTGATGTAACAAGAAGTTCATTTAAATATGCATAAAGATGATTATGATCACAGATAATGACGATAGTGATGAAAAACTAGACTCAAATTTGTTGTGATGGTGTCAATATTGCGATATTGGTTTGAAAGGGCAAACAagtttgttgaaaaagttaGTGTccgtgtgtttttttgtatggACTGCACGTGATGTATTATACTATTCCTTGTTTTCACTTTAAAGGGAGACAACACA
>XM_039799868.1
TGCAGGATTATCCTTCAGCCTCTGAGACATGCTGGTTTGGTCAGACTTATCGTCCTCTCTGGGTTCACTTTGGCCACAGAGGTCAAagctgcaaaaataaaaaaaaattgccacACATTAACCATCCAAAGTGCCAGCTACAAAGGACACATTTGGACTACAAATTGGACTACAAATTCATACATCTGCAGAGGAGTCTTTTCAAGaagttgtgtttgatttcaaattttttaggttgtttttctttctcaatgatgGATTCAACTATGTGCATGAGGAACCCAGCTCTGCTGCAGAGGACAGGTTTAGTCATTAGAGTGCTTTGCCACATCCAGGAAAATGTCTGGCTCCTACGATGAATGTGCAGGTGCTGACGACACCATGGACAGCTTCTGGGAGGTGGGGAACTACAAACGTGCTGTCAAGAGATTTGATGACGGCCATCGGCTCTGCAATGACCTTATGGGCTGCCTGCAGGAACGTGCCAAGATAGAAAAATCCTATGGTGATCAGCTAACGGCATGGTCCAAGAGATGGAGACAGCTCATTGAGAAAGGCCCACAGTACGGCTCAGTGGAGAGAGCCTGGCTGGCTGTCATGACCGAGGCAGAGAAGGTGAGTGAGCTGCACCAAGACGTGAAGAACAACCTGGTGAACGAAGACGTAGAGAAAGTGAAGAACTGGCAGAAGGAAGCCTATCACAAGCAAATGATCGGTGGCTTCAAAGAGGCCAAGGAGGCGGAGGAAGGCTTCAAAAAGGCTCAGAAACCGTGGGCCAAAAAGCTCAAGGAGATGGAAGCAGCTAAGAAATCCTACCACATGGCCTGCAAGGAGGAGAAGCTGGCTGCAGCCCGAGAGGCCAATGGCAAGACTGAGGCTTCTGTCACAGTAGACCAGCAGAAGAAACTCCACGAGAAAGTGGACAAATGCAAACAGGATGTGCAAAAGGCTAAAGAGAAGTACGAGAAGTCTCTGGAGGAGCTGAATAAGTGCACCCCGCAGTACATGGAGTGCATGGAGCAGGTGTTTGACCAGTGCCAGCAGCATGAAGTCAAGAGGCTGACTTTCCTCAAGGAGGCCTTGCTGGACATCAAACGCCATCTTAACCTCACAGAGAACGCAAGCTATGCCACAATATACAGAGAACTGGAGCGCACAATCCTGGGCGCAAACACACAAGAGGACCTGAAGTGGTTCAGCAACAACCACGGCCCTGAGATGCCTATGAACTGGCCTGCATTTGAGGAATACAACCCAGACCAGGCCAGTGCCCctccaaagaagaagaaaccagATGGAGCCCCACCCACTCCGAGCACAGACCATGTGGCTCCACCTGGTGACCGTAGCAGTGTGAGCAGCTATGAAAAAAACCAAGGTTTCTCGACTGAGTGGTCCGATGATGAGCAGCCCACTGCGAACTCTGGCAACGAAAATGGTGGGAACGGGAATTCTTTCGAAGATGACGTCAGCACTACTGGGAAATCGGTCCGCGTCCGCGCTCTCTATGATTATGAAGGCCAGGAACAGGATGAGCTCACCTTCAAAGCAGGTGATGAACTGACCAAGACTGAGGACGAAGATGAGCAAGGCTGGTGTAGAGGTCGCTTGGACAGCGGCCGAGAGGGACTTTACCCGGCCAATTACGTCGAGCCAATCTAGTCCCGCTATTGGACATGGACACGCCATTGGAGGCAGCTCGAACTGTCCCGTCCAATTGCACCGCACATAGCCAGAGACTTAAGAGCAACACATCCCTTGCCCAACAGATGCGCCAAGCAGTCTTGATAAAAACTTAGTAACCTAAAAGACATTATATCAGTATAATATATTTTATCCAGCATTTGTGGTGGGTGGAcctacacatttaaaaacaagagCAGCAGTTGTTCCAGTATATACACACTCAACTATAACATCAAGACAGACAGTGCAGGAACACATTGCTTCTCTGTGTAGCTGTATTTAATGTATAATGCAGCTTATTTAAACTTGCAGTGCACTGCAGTCTGTTCTTATGTGAGAATGGGAAGATAATAGAAACAGTTATACCCATTCGACCAAGACGAGCTTCTCTAACCTGCATTGTGTATATACAGTGTAATGCCATCTTTGTGTAGCATTTTTAATGCTGTGTGTGGTCAGTCATCATTCTTACATCTGGAATGCTGTGTAGTGTTAAAAGTACCACAAACAGTatcctctatttttttttttttcttgtttttttttgtttttcttttgtgattTGGTCCGACCTCTTTTCCAGTGTGTGTAGTGCTATGTGTGATTTAACTGTTTCTGAACTTGCATAGCAGCATGtgctatgcaaaaaaaaaacaaaaaaaacgtgcATTCCCTGAATCCTGCAGCCTCGTTGAGGCTACAACTTGATGCAACACATCAACTGCAAATGCAGAGTTCACTTTTTAGCATCACATTCTTCCGGACATGCTTCTGTTTTCATGAAAGGAAGCTTGCTGATGAAGTGATTTtatgttgtctttgttttgtttttgacatgTTTCTTTTCTTAGCATCACAAACCCGTTGACAGTATCATCTCCATGCAATCCAAGGAAAAGGATACACTGTCTCTGCAGAAGCTTTCATTCTTGGTTCAGTAATTCAGGTGTCATTTTAATCCGCTACTGCTAACAAGAAACACGAGTAATACATTCCCTCAGAGCGAAGCTGGATCAAGTCATCTTACTATACCTGTGCCAGTCACTTTTCTTCCAGAGCGAGGGGCCATTGGAGGCATGTTGATGCGTTACTGTGCTACAGAGGGTTGTCTGAAGATCGAAGCCTCTTCAACAGGACGTGAATGTACCACTGTTTAGGCTTGAAAGAGGGCATATTGTCTAAACATGGTTCTCCACTGTCACTTAAAGCCCTGTCTAGCAAAAAGCACTAGTTATACGGCCCGTTTTCCCTGCTGAGCCAAAGAATGACCCAATACCATCAACTATCCATTTTCTCTCCATGCAATAACAAACAGCTTCAGTGAGGATCATCTTGTAGCTGCTTCCCAATCCACCCAAACTGCATTTGTCTGCAAAACACCGCACAATGACACAGGGAATACATTTGTCACCAGTACTGCACTGCATGTAAGCTGACTCTTACACAGTGCATTACCTGGTTATTTTTAAAGTCTTTAACTTGCTCCATAGGAATTACATTTATAGCAGAAATTGCATTTATCAGATGTTGATTAGTGAGTTATCTTGCTCTAAGTTGCACCTAAATCTCTGATTAGATGGGAGAgatactttttatatatataacgtAGTTGTCCTGAAGTTTTAAAATTTCACTGGACCAACAGCAGTCAGATGTGTTTAGCTCTGTGTCTGGGACAGGATGTGACAGGTTTGGGTCTCACACGTGAGAAGGAACACATCACCAGCTCACAAGTTGTGTCTTAGAGTAAAGCTGTCCAGCATAGCAAAAAGGACTCCTATCATTAAAACTGTCCAACATCCTTGATGTgcgtatgcacacacacacacacacacacacatatacgcacgcacgcacgcatacacacgcatgcatacaaacacacatgcattaaacacacactatacacaacaCGCAGGTTCAAACACATAATCCACATAACCAGGTTAACATTTTGGGGAAAAACCTCTTCATCATCCAGTGTGTATGAGTTGTGTAAATgtaacagaaaaagaaatgtaaaaaaaaaacaaaaaaaaaatgcaagtgaTTGACTATTAAGACAAAATGTAGTGTTATACATGTAAATGTGATTCATAAAAATAACAGCAATGGAAAACATATTAAGTAATAGGTACCATATCGTATGAATTTCATTGCAATGGAATTGTCAGTGTATCATAAAAGCGTGACGTTATCCCACGCTGTCAGATTTGTATATGATGATGTAATTTAAAGATTATATTCTATTGTAACTGTACAACTGTGTTGAGTTGAGAAATGAGACCTGACCATGTTGAGGCAGTAAAAAGGTGTACATGTAAATGCTTTTTTATGTTGATGATCTTTTCCTTATGCacacaggggacagcagctcATGTTGTGGAAACCCTATATTAGCGGTCTAGAAGATGTATGTTCATAGTTAGTGATGTACTTTTATCTCCTAACTGGTGTAGTGCCTGTTCATCTTGATGTAACAAGAAGTTCATTTAAATATGCATAAAGATGATTATGATCACAGATAATGACGATAGTGATGAAAAACTAGACTCAAATTTGTTGTGATGGTGTCAATATTGCGATATTGGTTTGAAAGGGCAAACAagtttgttgaaaaagttaGTGTccgtgtgtttttttgtatggACTGCACGTGATGTATTATACTATTCCTTGTTTTCACTTTAAAGGGAGACAACACA

Function

symbol description
pacsin1 Enables phospholipid binding activity. Involved in plasma membrane tubulation. Located in cytoplasm.

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 1

GO:

id name namespace
GO:0097320 plasma membrane tubulation biological_process
GO:0007015 actin filament organization biological_process
GO:0048666 neuron development biological_process

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799867.1 False 4311 mRNA 0.44 11 14145227 14185140
XM_039799868.1 True 4391 mRNA 0.43 10 14163330 14185140

Neighbor

gene id symbol gene type direction distance location
oard1 oard1,LOC106909399 coding upstream 487851 13655553 ~ 13657376 (+)
guca1b guca1b coding upstream 490567 13652368 ~ 13654660 (+)
LOC120559296 ppp4r2 coding upstream 495331 13642629 ~ 13649896 (+)
LOC120559547 mitf coding upstream 539792 13564625 ~ 13605435 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 613739 13527308 ~ 13531488 (+)
LOC120558842 anks1a coding downstream 45995 14231135 ~ 14305611 (+)
LOC120559736 NA coding downstream 122822 14307962 ~ 14317786 (+)
scube3 scube3 coding downstream 140662 14325802 ~ 14402540 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding downstream 346014 14531154 ~ 14539601 (+)
aaas aaas coding downstream 367093 14552233 ~ 14561394 (+)
G49619 NA non-coding upstream 20691 14123652 ~ 14124536 (+)
LOC120558703 NA non-coding upstream 153112 13758587 ~ 13992115 (+)
LOC120558704 NA non-coding upstream 346575 13779267 ~ 13798652 (+)
G49598 NA non-coding upstream 379115 13764559 ~ 13766112 (+)
G49591 NA non-coding upstream 394385 13749558 ~ 13750842 (+)
G49663 NA non-coding downstream 38155 14223295 ~ 14223723 (+)
G49660 NA non-coding downstream 43230 14228370 ~ 14229092 (+)
G49665 NA non-coding downstream 44505 14229645 ~ 14230394 (+)
G49718 NA non-coding downstream 217566 14402706 ~ 14403546 (+)
G49717 NA non-coding downstream 218755 14403895 ~ 14409162 (+)
hmga1a hmga1,LOC103355299 other upstream 24205 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 420237 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 610305 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 1259003 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 1300793 12794943 ~ 12844434 (+)
uhrf1bp1 uhrf1bp1 other downstream 20457 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 379727 14564867 ~ 14567456 (+)
G49776 NA other downstream 389402 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1587077 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1591077 15776217 ~ 15867369 (+)

Expression


Co-expression Network