LOC120558717 (rho)


Basic Information

Item Value
gene id LOC120558717
gene name rho
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16451768 ~ 16459991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799885.1
CGTAAAGGGGCTGCAGAGCACGTAAGATCCAGACGTCCTTTCTCCCCCATTTGCACTACGGCTGCACTACAAGACTCCCTCACAGTGTTTGATGTTTTTGAGAAGAGGCACAGACTGTTACATCCAGTGTTAAAGTCtcagaggaagaaaaaacatcACCAACTGCAGCCATGAATGGCACAGAAGGACCCAACTTTTACGTCCCCATGTCTAACAAGACTGGGTTGGTTCGCAGCCCATTTGAGCACCCTCAGTACTACCTGGCTGAGCCCTGGAAGTACTCTCTTCTGGCTGCGTACATGCTGTTCCTCATCATTACTGCCTTCCCCATCAACTTTCTCACACTCTATGTcaccatcaaaaacaaaaagctgaGGACGGCTCTGAACTATGTCCTGCTCAACCTGGCGGTGGCCGACCTCTTCATGGTCCATGGGGGATTCACAGTCACTCTCTACACAGCACTGCATGGATACTTCGTCTTGGGGGTCACCGGCTGCAACATTGAGGGATTCTTTGCCACCTTAGGAGGGGAGATTGCTCTCTGGTCTCTGGTGGTTTTGGCTATTGAGCGCTACATTGTAGTCTGTAAGCCAATGACCAACTTCCGCTTTGGGGAGAAACATGCCATCGCTGGGCTAGCATTTACATGGATCATGGCCCTGACTTGTGCTGTTCCCCCTCTGCTCGGATGGTCCCGGTACATCCCAGAGGGAATGCAGTGCTCCTGTGGGATTGACTACTACACTCCTAAGCCTGAGATCCACAACACCTCATTTGTCATCTATATGTTCGTCCTCCATTTCCTTATCCcccttattattattttcttctgCTACAGTCGCCTACTCTGCACTGTGCGAGCGGCTGCGGCCCAGCAGCAAGAGTCTGAAACCACCCagagagcagagaaagaggTGACACGTATGGTTATCATCATGGTGATCTCCTTCCTGGTGTGCTGGATGCCCTATGCAACCGTGGCTTGGTACATCTTTGCCAATCAGGGAACTGAGTTTGGACCAGTGTTTATGACTGCTCCGGCTTTCTTCGCCAAGAGTGCTGCTCTGTACAACCCAGTCATCTACATTCTGCTAAACAGACAGTTCAGAAACTGCATGATCACCACTGTGTGCTGTGGAAAAAACCCGTTTGGAGACAATGAGGCCAGCACCGCTACCACCTCCAAAACTCAGACTTCGTCTGTCTCATCCAGCCAGGTGGCCCCTGCTTGACCGGtgccctctcctccccccttcAATGTCCCATCTGTCCCTGCACACCTAGGGACCCACCACCGCAAAGCAGCACCATGTTCATTTGGCCAATCCTCTTGACTTACATCTCCATGTGTCTTCACTGCACCGATACAACTGCACTTTTAGTGGGACTGACATACTCATGAGCCAGAATGAGTATTTTCAATCCATTTAATCATGGAAAGTGTTCAGCTGGCTTCACAGATTTGAACCCAGCATCAAGGGGGTGTTGTGTGATGATACAACTGAACACATTTCAAGCTCCCCACTACCCAAAAACACATAATAGGTGAAAACAAACCGAACCGGATGATTTCATTCACATCAACTCTTGTTCAAGTAATTGTTGTAGCTATATATCTCCAAAATGCGCTTTAAACAATCAATTTTATGATTACTTGTAATTGTGTAATTAGTCATGAATTTGTTTAGATATCTCAGATGATTTTTGAGGCATCAGATGGGGCTGCCTCTTTCCTCTTTATGGTGAAGAAGCTGGGGTTGTTAGTTTGCTCTTGGCATTGACATTGAGACATGAGTGTAAACAGATGGACCTGAAAAGAGCCTCTGCAGGGAGATGGCTCCTCCTGCAAGACAGTGGATgcttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggatggCAGACTGCCAGTGTGAGTATTACAGAGGT

Function

symbol description
rho Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light. Located in photoreceptor outer segment. Is expressed in several structures, including digestive system; endocrine system; photoreceptor cell; presumptive neural retina; and visual system. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

NR:

description
rhodopsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799885.1 True 1950 mRNA 0.48 5 16451768 16459991

Neighbor

gene id symbol gene type direction distance location
ift122 ift122,LOC102796889 coding upstream 1138 16429579 ~ 16450630 (+)
LOC120558716 creld1,LOC102797660,LOC103361984,LOC100691430 coding upstream 27587 16418835 ~ 16424181 (+)
wu:fl23c11 NA coding upstream 33356 16409281 ~ 16418412 (+)
LOC120559120 NA coding upstream 146801 16297931 ~ 16304967 (+)
fgd fgd3,LOC104966710 coding upstream 167969 16225552 ~ 16283799 (+)
trh trh coding downstream 151226 16611217 ~ 16613788 (+)
LOC120559103 rbsn coding downstream 158472 16618463 ~ 16625418 (+)
b3galt4 b3galt4,LOC104957801,LOC102791999 coding downstream 186192 16646183 ~ 16649147 (+)
LOC120559510 LOC102311931,LOC106676355,LOC102214845 coding downstream 200476 16660467 ~ 16666649 (+)
LOC120559511 LOC102311931,LOC106676355,LOC102214845,LOC102799804 coding downstream 210837 16670828 ~ 16679344 (+)
G50280 NA non-coding upstream 25948 16425618 ~ 16425820 (+)
G50218 NA non-coding upstream 166009 16285557 ~ 16285759 (+)
G50077 NA non-coding upstream 500596 15949249 ~ 15951172 (+)
G50029 NA non-coding upstream 746300 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 782224 15667249 ~ 15669544 (+)
LOC120558722 NA non-coding downstream 84278 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 107010 16567001 ~ 16569382 (+)
G50320 NA non-coding downstream 120068 16580059 ~ 16580993 (+)
G50326 NA non-coding downstream 145974 16605965 ~ 16626218 (+)
LOC120559512 NA non-coding downstream 220590 16680581 ~ 16683534 (+)
LOC120559923 NA other upstream 43307 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 55560 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 72123 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 140751 16304312 ~ 16311017 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 482437 15885990 ~ 15969331 (+)
eif2d eif2d other downstream 517906 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 725920 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 1281380 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1795901 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 2222152 18682143 ~ 18686302 (+)

Expression


Co-expression Network