LOC120558753


Basic Information

Item Value
gene id LOC120558753
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28390403 ~ 28399081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799955.1
tgtattgtaggcctatataaggCAAAGGCAGTTCTTGATCCAGCATAACAGCCTACAGGTGTGTCTCTTCCAGCCAGCATCTGTCTTACTGTTCACCTCAGACCAGATCTTCTAAAACCATGCTCTGCTTCACACTCAGCACCACACTGTTGCTGGCAGCAACGTGTTCGCTCATGACAGCAGTTGTCTCCACAGAGAGAGCTATCACCTGTGGCAGCAACAAGAATGTCCAACGCCTGAGCTGCGATGACGGAGTGATCAGTGTGCAGACAGCACTGTATGGACGTGCAAACGCTGTGACCTGCAGTGAGGGAAGACCTCCGGCACAGCTCGCTAATACAAACTGCTCTCAAGCGGGCACAGTGGACGTTGTCAAGAAAAGGTGTGATGGCAAGAGGGAGTGTGAAGTAAACATCAACGTATTTTGTACCTCTGATCCCTGTTATGGCACCTACAAATACCTGGACACCACATACACCTGCCTCCCAGCAATTCACATTGATGCCTGTGAGGGCTCTTTGGCGCAACTCCAGTgtgATCAAGGACAGGTTATATTTGTGTATGGTGCCGACTATGGACGTCGTGACCAGACCACCTGCATTTACAAACGGCCTCCCAATCAAGTTCAAAATATCTACTGCTCAAGCCCCACACGCAAAGTTGCTGACAGCTGTAATGGAAAAAACAGCTGTACCATCGCAGTGAGCAACTCTGTGTTTGGAGACCCCTGCAGCAGCACCTACAAGTATCTGGAGGTGGCTTACACATGTGATTATCCTGGGACTGCTCCGCTTCCATAGTGTAAGCATACTGAAGTTTCAGTCAAATCACAATAAACATGCAATCAATTAAA
>XM_039799956.1
GTCTTACTGTTCACCTCAGACCGGATCTTCTAAAACCATGCTCTGCTTCAGACTCAGCACCACACTGTTGCTGGCAGCAACGTGTTCGCTCATGACAGCAGTTGTCTCCACAGAGAGAGCTATCACCTGTGGCAGCAACAAGAATGTCCAACGCCTGAGCTGCGATGACGGAGTGATCAGTGTGCAGACAGCACTGTATGGACGTGCAAACGCTGTGACCTGCAGTGAGGGAAGACCTCCGGCACAGCTCGCTAATACAAACTGCTCTCAAGCGGGCACAGTGGACGTTGTCAAGAAAAGGTGTGATGGCAAGAGGGAGTGTGAAGTAAACATCAACGTATTTTGTACCTCTGATCCCTGTTATGGCACCTACAAATACCTGGACACCACATACACCTGCCTCCCAGCAATTCACATTGATGCCTGTGAGGGCTCTTTGGCGCAACTCCAGTgtgATCAAGGACAGGTTATATTTGTGTATGGTGCCGACTATGGACGTCGTGACCAGACCACCTGCATTTACAAACGGCCTCCCAATCAAGTTCAAAATATCTACTGCTCAAGCCCCACACGCAAAGTTGCTGACAGCTGTAATGGAAAAAACAGCTGTACCATCGCAGTGAGCAACTCTGTGTTTGGAGACCCCTGCAGCAGCACCTACAAGTATCTGGAGGTGGCTTACACATGTGATTATCCTGGGACTGCTCCGCTTCCATAGTGTAAGCATACTGAAGTTTCAGTCAAATCACAATAAACATGCAATCAATTAAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799955.1 True 853 mRNA 0.49 9 28393857 28399081
XM_039799956.1 False 771 mRNA 0.49 9 28390403 28399081

Neighbor

gene id symbol gene type direction distance location
LOC120559025 NA coding upstream 13232 28363176 ~ 28377171 (+)
soga1 NA coding upstream 86125 28199573 ~ 28304278 (+)
trnar-ccu_2 NA coding upstream 597839 27792492 ~ 27792564 (+)
trnar-ccu_1 NA coding upstream 626966 27763365 ~ 27763437 (+)
si:dkey-72l14.3 LOC100706739,LOC101069958,LOC103385031,LOC104952267 coding upstream 665940 27706496 ~ 27724463 (+)
LOC120559027 NA coding downstream 21448 28420529 ~ 28442383 (+)
cep104 cep104 coding downstream 60080 28459161 ~ 28500476 (+)
c5h1orf174 NA coding downstream 105405 28504486 ~ 28508540 (+)
nphp4 nphp4 coding downstream 112966 28512047 ~ 28697909 (+)
cfap74 cfap74 coding downstream 784245 29183326 ~ 29245568 (+)
G53770 NA non-coding upstream 65470 28324728 ~ 28324933 (+)
G53734 NA non-coding upstream 193647 28196546 ~ 28196756 (+)
G53696 NA non-coding upstream 232470 28156713 ~ 28157933 (+)
G53681 NA non-coding upstream 444548 27945651 ~ 27945855 (+)
G53649 LOC102314191,LOC102208045,LOC101465377,LOC102783560 non-coding upstream 535262 27853478 ~ 27855141 (+)
LOC120558758 NA non-coding downstream 47361 28446442 ~ 28454275 (+)
G53782 LOC103356136,LOC104946517,LOC101486029 non-coding downstream 101506 28500587 ~ 28502913 (+)
G53884 NA non-coding downstream 556479 28955560 ~ 28955816 (+)
G53885 NA non-coding downstream 565555 28964636 ~ 28970345 (+)
G53897 NA non-coding downstream 706713 29105794 ~ 29106722 (+)
G53775 NA other upstream 44487 28341922 ~ 28345916 (+)
casp9 LOC104954971 other upstream 67624 28319637 ~ 28322779 (+)
bsna bsn,LOC102782891,LOC106513106 other upstream 246602 27954399 ~ 28143801 (+)
LOC120559343 NA other upstream 794994 27585525 ~ 27595409 (+)
LOC120559859 LOC101468803,LOC100690459 other upstream 972944 27412252 ~ 27417459 (+)
LOC120558754 NA other downstream 8190 28407271 ~ 28415747 (+)
nadka nadk other downstream 897523 29296604 ~ 29323242 (+)
plekhm2 plekhm2 other downstream 1124942 29524023 ~ 29545886 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other downstream 1149663 29548744 ~ 29567773 (+)
G54103 LOC103366252 other downstream 1353365 29752446 ~ 29758010 (+)

Expression


Co-expression Network