LOC120558778


Basic Information

Item Value
gene id LOC120558778
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10023340 ~ 10116835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800009.1
GCTGTCTCCACAGGCACACTGAGGTTTGGCTTGGTTAAGGATTTCCTTGCATCTCTCCCCTCCTTGGTGGGACGTACGCCAGATTGGGATTTTGGCGCTGAAAAAccttgagagagagagcgctctGGACTGGCCGATTGTGAGGACCTCTTGGTTGGAGCTAGCTGTGAGTGCTGACTGGAGATGATAAGTCAAAATATGGCTCCGCTGCCAGGCGCTGCTAATGTGCTGTTGCTTTTGGCCTTTTCTTTATCAGGGACGTCTCCACAGAGGATCATAGGGGGTCAGGAGGTCCTGCCTTACTCTATCAAATACCAGGCATCGCTGCAGTTCAGTGATACCAAGCAACACTACTGTGGAGGAACCTTAGTGCACCCTGAGTGGGTGGTCTCTGCTGCCCACTGCTGGAGACCGAGCAGTCGAATGCTGGTGGTGTTAAGTGAACACAGCCTGGACAAGGAAGAAGGATTTGAACAGGTCTTTAATGTCTCAAAGATATTTGTCCACAACTTTAACTACAACTCATTCGACAACGACATCATGATGATCAAGCTGAGTAGGCCGGCCCAGCTGAATGCTAACGTCCAGCCAGCTGTTCTGCCTGATGATAGCGCTCCTTCACTTTATAATGACGTGTGCACAGTGAGCGGCTGGGGTGTGACACAGATTTACAGTTACTCCCTGTCTCCTGTGCTACGTTCTGTGGACGTGAGAATAGTTCCCTACTGCTCTTATTACTACTGGGGGAGGATCACTTCAAACATGCTGTGTGCTGGATCTCAATTAGGTGGCAAAGATTCCTGCCAGGGTGACTCCGGTGGTCCCCTTATCTGCAATGGCCTCTTCGAGGGCATTGTCTCCTGGGGTATCAGCTGCGCAAACCCTTACTTCCCTGGAGTCTACACCAAAGTGAGAAACTACATCCCTTGGATCAAATGGATCACGGAGCAACAATAAGACACCATGAACAGTCATCACAATCCTTGATGAGCAGCCTGCAAAGACAGGCTTCAAGATTTAttcattttgaaaacaaatagCAATGGCCTATTTCATTACTAATAACTTTCTTTGTGGGGGTTTTCTTTATAACACTAACTATCACCTTCACAGACTTAGTTTAATTGCAATTCATAATGTTGGGGTATGCTATATAGAGCCTGGGTTATCATCTCTAGATATAAGGTTTCTGGGAAATGTGTTAATATGCTTACAATTAATTGATTTCCATTCATTTATTGTTCTGATagagaaaatacagaaataaaccCATTATATTGTca
>XM_039800011.1
TTCATACCGGCCCAGTTCCATTTATTCCCTGCCAGCCTATCTACACTCTCCCTTATCCTTGTGACAATTCCTGTAtagatttatataaaaaaatataaaaaagatcaAATAGTTACATCAAGAGATggcttttgtgtgtgtcacagcTTATAAAGGATTTCCTTGCATCTCTCCCCTCCTTGGTGGGACGTACGCCAGATTGGGATTTTGGCGCTGAAAAAccttgagagagagagcgctctGGACTGGCCGATTGTGAGGACCTCTTGGTTGGAGCTAGCTGTGAGTGCTGACTGGAGATGATAAGTCAAAATATGGCTCCGCTGCCAGGCGCTGCTAATGTGCTGTTGCTTTTGGCCTTTTCTTTATCAGGGACGTCTCCACAGAGGATCATAGGGGGTCAGGAGGTCCTGCCTTACTCTATCAAATACCAGGCATCGCTGCAGTTCAGTGATACCAAGCAACACTACTGTGGAGGAACCTTAGTGCACCCTGAGTGGGTGGTCTCTGCTGCCCACTGCTGGAGACCGAGCAGTCGAATGCTGGTGGTGTTAAGTGAACACAGCCTGGACAAGGAAGAAGGATTTGAACAGGTCTTTAATGTCTCAAAGATATTTGTCCACAACTTTAACTACAACTCATTCGACAACGACATCATGATGATCAAGCTGAGTAGGCCGGCCCAGCTGAATGCTAACGTCCAGCCAGCTGTTCTGCCTGATGATAGCGCTCCTTCACTTTATAATGACGTGTGCACAGTGAGCGGCTGGGGTGTGACACAGATTTACAGTTACTCCCTGTCTCCTGTGCTACGTTCTGTGGACGTGAGAATAGTTCCCTACTGCTCTTATTACTACTGGGGGAGGATCACTTCAAACATGCTGTGTGCTGGATCTCAATTAGGTGGCAAAGATTCCTGCCAGGGTGACTCCGGTGGTCCCCTTATCTGCAATGGCCTCTTCGAGGGCATTGTCTCCTGGGGTATCAGCTGCGCAAACCCTTACTTCCCTGGAGTCTACACCAAAGTGAGAAACTACATCCCTTGGATCAAATGGATCACGGAGCAACAATAAGACACCATGAACAGTCATCACAATCCTTGATGAGCAGCCTGCAAAGACAGGCTTCAAGATTTAttcattttgaaaacaaatagCAATGGCCTATTTCATTACTAATAACTTTCTTTGTGGGGGTTTTCTTTATAACACTAACTATCACCTTCACAGACTTAGTTTAATTGCAATTCATAATGTTGGGGTATGCTATATAGAGCCTGGGTTATCATCTCTAGATATAAGGTTTCTGGGAAATGTGTTAATATGCTTACAATTAATTGATTTCCATTCATTTATTGTTCTGATagagaaaatacagaaataaaccCATTATATTGTca
>XM_039800012.1
actgagagaatgtgacgtgagcaacgtgtctgaaagttGATTTCCTTGCATCTCTCCCCTCCTTGGTGGGACGTACGCCAGATTGGGATTTTGGCGCTGAAAAAccttgagagagagagcgctctGGACTGGCCGATTGTGAGGACCTCTTGGTTGGAGCTAGCTGTGAGTGCTGACTGGAGATGATAAGTCAAAATATGGCTCCGCTGCCAGGCGCTGCTAATGTGCTGTTGCTTTTGGCCTTTTCTTTATCAGGGACGTCTCCACAGAGGATCATAGGGGGTCAGGAGGTCCTGCCTTACTCTATCAAATACCAGGCATCGCTGCAGTTCAGTGATACCAAGCAACACTACTGTGGAGGAACCTTAGTGCACCCTGAGTGGGTGGTCTCTGCTGCCCACTGCTGGAGACCGAGCAGTCGAATGCTGGTGGTGTTAAGTGAACACAGCCTGGACAAGGAAGAAGGATTTGAACAGGTCTTTAATGTCTCAAAGATATTTGTCCACAACTTTAACTACAACTCATTCGACAACGACATCATGATGATCAAGCTGAGTAGGCCGGCCCAGCTGAATGCTAACGTCCAGCCAGCTGTTCTGCCTGATGATAGCGCTCCTTCACTTTATAATGACGTGTGCACAGTGAGCGGCTGGGGTGTGACACAGATTTACAGTTACTCCCTGTCTCCTGTGCTACGTTCTGTGGACGTGAGAATAGTTCCCTACTGCTCTTATTACTACTGGGGGAGGATCACTTCAAACATGCTGTGTGCTGGATCTCAATTAGGTGGCAAAGATTCCTGCCAGGGTGACTCCGGTGGTCCCCTTATCTGCAATGGCCTCTTCGAGGGCATTGTCTCCTGGGGTATCAGCTGCGCAAACCCTTACTTCCCTGGAGTCTACACCAAAGTGAGAAACTACATCCCTTGGATCAAATGGATCACGGAGCAACAATAAGACACCATGAACAGTCATCACAATCCTTGATGAGCAGCCTGCAAAGACAGGCTTCAAGATTTAttcattttgaaaacaaatagCAATGGCCTATTTCATTACTAATAACTTTCTTTGTGGGGGTTTTCTTTATAACACTAACTATCACCTTCACAGACTTAGTTTAATTGCAATTCATAATGTTGGGGTATGCTATATAGAGCCTGGGTTATCATCTCTAGATATAAGGTTTCTGGGAAATGTGTTAATATGCTTACAATTAATTGATTTCCATTCATTTATTGTTCTGATagagaaaatacagaaataaaccCATTATATTGTca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800009.1 False 1283 mRNA 0.46 7 10029532 10116835
XM_039800011.1 True 1399 mRNA 0.45 7 10042489 10116835
XM_039800012.1 False 1282 mRNA 0.46 7 10023340 10116835

Neighbor

gene id symbol gene type direction distance location
fam43b fam43b coding upstream 24026 9996288 ~ 9999314 (+)
vwa5b1 vwa5b1 coding upstream 53417 9936549 ~ 9969923 (+)
LOC120559339 cptp coding upstream 104708 9916527 ~ 9918632 (+)
LOC120559338 NA coding upstream 118897 9901990 ~ 9904443 (+)
sdf4 sdf4 coding upstream 261416 9754069 ~ 9761924 (+)
pink1 pink1 coding downstream 1850 10118685 ~ 10131254 (+)
hspg2 hspg2 coding downstream 46167 10163002 ~ 10288140 (+)
tmem269 LOC103365731,LOC102791044,LOC104928629,LOC100689985,LOC100710458,LOC108237576,LOC101473555 coding downstream 186560 10303395 ~ 10316636 (+)
magi3a magi3 coding downstream 209913 10326748 ~ 10526334 (+)
LOC120559190 LOC103365742 coding downstream 413828 10530663 ~ 10540352 (+)
G48507 NA non-coding upstream 8957 10010836 ~ 10014383 (+)
G48481 NA non-coding upstream 102532 9920048 ~ 9920808 (+)
G48415 LOC103359731 non-coding upstream 218994 9803739 ~ 9804346 (+)
G48400 NA non-coding upstream 256945 9764056 ~ 9766395 (+)
G48399 NA non-coding upstream 270795 9752026 ~ 9752545 (+)
G48594 NA non-coding downstream 287217 10404052 ~ 10404759 (+)
G48602 NA non-coding downstream 394987 10511822 ~ 10542926 (+)
LOC120559193 NA non-coding downstream 427174 10544009 ~ 10560240 (+)
G48639 NA non-coding downstream 469324 10586159 ~ 10586543 (+)
LOC120558408 NA non-coding downstream 519641 10636476 ~ 10637645 (+)
ubxn10 NA other upstream 98259 9922600 ~ 9925081 (+)
G48347 NA other upstream 593393 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 901428 8990487 ~ 9121912 (+)
G48162 NA other upstream 1296788 8716767 ~ 8726552 (+)
G48077 NA other upstream 1335376 8680282 ~ 8687964 (+)
agmat agmat,LOC102790280 other downstream 22763 10139598 ~ 10151251 (+)
G48640 NA other downstream 497196 10614031 ~ 10750428 (+)
G48752 NA other downstream 1055760 11172595 ~ 11173654 (+)
G48765 NA other downstream 1197827 11314662 ~ 11315992 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 1967617 12084452 ~ 12090773 (+)

Expression


Co-expression Network