pqbp1 (pqbp1)


Basic Information

Item Value
gene id pqbp1
gene name pqbp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12499369 ~ 12504342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800030.1
GAGAACGGAGCTGCGTCATCATTGTGCGCGCCGTGTGGTGTGTTGTGGGAAGTCGTGTCGTCAACTCTCCTCGATTTTCAGGcgattttcttaaaaaaagtaatagGATGCCTCTACCCGCGGCACTGCTGGCCCGCTTGGCCAAGAGAGGGATTGTTAAACCATCAGACCAAGAGGTAGATGAGGAGATTATTGCTGAAGATTACGATGACAACAACGTAGATTACGAATCCACGAGAGTGGAGAATCTACCACCTAACTGGTATAAAGTGTTTGACCCTGCTTGTGGTCTTCCCTATTACTGGAATGCGGAGACAGATTTGGTGGCGTGGCTGTCCCCAAATGACCCAACTGCAGTGGTAACAAAACCTGCCAAGAAAATTAGAGTTGAGGGAGGAGATGAAAGAGTTGAGAGGCCGTTTGAGAAGccagacagagagcgagagcggGAAAGAGACAAAGATCGGGATCGGGACAGAGACCGAGAGAGGGATGAagggagggacagagacagaagaAAGATGAGGAGAGAGGACACGGCTCCGTACAGTAAGAACAAAAGAGGGAGAAAAGATGATGAGATGGACCCCATGGATCCAAGTGCTTATTCTGATGCCCCAAGGGGCAATTGGTCAAGCGGCCTGCCCAAGCGTAATGAAGCAAAGACGGGTGCGGATACCACAGCGGCGGGCCCCCTGTTCCAGCAGCGGCCCTACCCCAGTCCCGGAGCCGTGCTCCGGGCTAACGCAGCAAACCAACTACCCAAGGAGTAAGCCGAGCTCCCGGGGAACAGCTACAAAAGACACAGCTGTAAAGTTAGTCTCATCTTAACATTTGCTATTACAGACTGACATTCTTAAGTTGTATTTTCATTCTAAAACCTGCAATTGTCAGAAATTGAGTGCTGAGCTTTTACACCACCAGTGCATTCATACTCTTGTCAAACATGTAGAACAgttgtaaatatgtttttatatgaCCTAAAGATTGACCTTTTTGTTGTTAACTAAAGCCATTACTGGACTTCATTTGCTAATAAATGTAAAGAATAAACTTTGGAAATGA
>XM_039800031.1
GTCGTCAGGAGAACGGAGCTGCGTCATCATTGTGCGCGCCGTGTGGTGTGTTGTGGGAAGTCGTGTCGTCAACTCTCCTCGATTTTCAGGcgattttcttaaaaaaaGATGCCTCTACCCGCGGCACTGCTGGCCCGCTTGGCCAAGAGAGGGATTGTTAAACCATCAGACCAAGAGGTAGATGAGGAGATTATTGCTGAAGATTACGATGACAACAACGTAGATTACGAATCCACGAGAGTGGAGAATCTACCACCTAACTGGTATAAAGTGTTTGACCCTGCTTGTGGTCTTCCCTATTACTGGAATGCGGAGACAGATTTGGTGGCGTGGCTGTCCCCAAATGACCCAACTGCAGTGGTAACAAAACCTGCCAAGAAAATTAGAGTTGAGGGAGGAGATGAAAGAGTTGAGAGGCCGTTTGAGAAGccagacagagagcgagagcggGAAAGAGACAAAGATCGGGATCGGGACAGAGACCGAGAGAGGGATGAagggagggacagagacagaagaAAGATGAGGAGAGAGGACACGGCTCCGTACAGTAAGAACAAAAGAGGGAGAAAAGATGATGAGATGGACCCCATGGATCCAAGTGCTTATTCTGATGCCCCAAGGGGCAATTGGTCAAGCGGCCTGCCCAAGCGTAATGAAGCAAAGACGGGTGCGGATACCACAGCGGCGGGCCCCCTGTTCCAGCAGCGGCCCTACCCCAGTCCCGGAGCCGTGCTCCGGGCTAACGCAGCAAACCAACTACCCAAGGAGTAAGCCGAGCTCCCGGGGAACAGCTACAAAAGACACAGCTGTAAAGTTAGTCTCATCTTAACATTTGCTATTACAGACTGACATTCTTAAGTTGTATTTTCATTCTAAAACCTGCAATTGTCAGAAATTGAGTGCTGAGCTTTTACACCACCAGTGCATTCATACTCTTGTCAAACATGTAGAACAgttgtaaatatgtttttatatgaCCTAAAGATTGACCTTTTTGTTGTTAACTAAAGCCATTACTGGACTTCATTTGCTAATAAATGTAAAGAATAAACTTTGGAAATGA
>XM_039800033.1
CGTCATCGAGCGACCGGGTGCAGTAATTTTATGTAATGTATCGTGCATAGCGCgattgatttcaaaatgcagAATGTCTcccttatttaaaaaagaagactTTGTACAAAACCGAGCAGCTTAAAGTAGCTTACAACAACACAAGCTAACGTACTGGGAGCCGCAGAGGATGCCTCTACCCGCGGCACTGCTGGCCCGCTTGGCCAAGAGAGGGATTGTTAAACCATCAGACCAAGAGGTAGATGAGGAGATTATTGCTGAAGATTACGATGACAACAACGTAGATTACGAATCCACGAGAGTGGAGAATCTACCACCTAACTGGTATAAAGTGTTTGACCCTGCTTGTGGTCTTCCCTATTACTGGAATGCGGAGACAGATTTGGTGGCGTGGCTGTCCCCAAATGACCCAACTGCAGTGGTAACAAAACCTGCCAAGAAAATTAGAGTTGAGGGAGGAGATGAAAGAGTTGAGAGGCCGTTTGAGAAGccagacagagagcgagagcggGAAAGAGACAAAGATCGGGATCGGGACAGAGACCGAGAGAGGGATGAagggagggacagagacagaagaAAGATGAGGAGAGAGGACACGGCTCCGTACAGTAAGAACAAAAGAGGGAGAAAAGATGATGAGATGGACCCCATGGATCCAAGTGCTTATTCTGATGCCCCAAGGGGCAATTGGTCAAGCGGCCTGCCCAAGCGTAATGAAGCAAAGACGGGTGCGGATACCACAGCGGCGGGCCCCCTGTTCCAGCAGCGGCCCTACCCCAGTCCCGGAGCCGTGCTCCGGGCTAACGCAGCAAACCAACTACCCAAGGAGTAAGCCGAGCTCCCGGGGAACAGCTACAAAAGACACAGCTGTAAAGTTAGTCTCATCTTAACATTTGCTATTACAGACTGACATTCTTAAGTTGTATTTTCATTCTAAAACCTGCAATTGTCAGAAATTGAGTGCTGAGCTTTTACACCACCAGTGCATTCATACTCTTGTCAAACATGTAGAACAgttgtaaatatgtttttatatgaCCTAAAGATTGACCTTTTTGTTGTTAACTAAAGCCATTACTGGACTTCATTTGCTAATAAATGTAAAGAATAAACTTTGGAAATGA

Function

symbol description
pqbp1 Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in nuclear speck. Predicted to be active in cytoplasm and nuclear body. Human ortholog(s) of this gene implicated in Renpenning syndrome. Orthologous to human PQBP1 (polyglutamine binding protein 1).

NR:

description
polyglutamine-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K12865 PQBP1, NPW38; polyglutamine-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800030.1 False 1065 mRNA 0.47 7 12499377 12504342
XM_039800031.1 False 1066 mRNA 0.48 7 12499369 12504342
XM_039800033.1 True 1127 mRNA 0.47 7 12499613 12504342

Neighbor

gene id symbol gene type direction distance location
LOC120558417 NA coding upstream 113096 12381032 ~ 12386273 (+)
rad21l1 NA coding upstream 119672 12368796 ~ 12379697 (+)
opn7d LOC104933009,LOC103354604 coding upstream 135465 12351633 ~ 12363904 (+)
emilin3a NA coding upstream 152121 12343319 ~ 12347248 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding upstream 255568 12241046 ~ 12243801 (+)
LOC120558783 LOC103354697 coding downstream 8912 12513254 ~ 12556372 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding downstream 57469 12561811 ~ 12587368 (+)
kdm5c kdm5c coding downstream 86565 12590907 ~ 12611168 (+)
LOC120559891 NA coding downstream 142194 12646536 ~ 12650775 (+)
wdr13 wdr13 coding downstream 158133 12662475 ~ 12670394 (+)
G49223 NA non-coding upstream 23344 12474087 ~ 12476025 (+)
G49221 NA non-coding upstream 27097 12470450 ~ 12472272 (+)
G49157 NA non-coding upstream 134928 12364093 ~ 12364441 (+)
G49106 NA non-coding upstream 276315 12220013 ~ 12223054 (+)
G49105 NA non-coding upstream 286854 12211744 ~ 12212515 (+)
G49230 NA non-coding downstream 5700 12510042 ~ 12511578 (+)
G49241 LOC101072313 non-coding downstream 156085 12660427 ~ 12661371 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding downstream 170000 12674342 ~ 12677678 (+)
LOC120559802 NA non-coding downstream 222258 12726600 ~ 12732417 (+)
G49314 NA non-coding downstream 276273 12780615 ~ 12783788 (+)
G49209 NA other upstream 40930 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 195966 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 245309 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 275731 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 288960 12182209 ~ 12210409 (+)
LOC120558314 porcn other downstream 148042 12652384 ~ 12658308 (+)
LOC120559236 LOC103354867 other downstream 290601 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 356379 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 1028048 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 1154390 13658732 ~ 13724990 (+)

Expression


Co-expression Network