si:dkey-21c19.3 (senp1,LOC102196255,LOC102311320)


Basic Information

Item Value
gene id si:dkey-21c19.3
gene name senp1,LOC102196255,LOC102311320
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21032895 ~ 21045968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800106.1
TGTGCGATGGTTAAGTGTCCTATTCAGCCATGTTGTGGTTTTGAATGAGGAAGAAGCGGGAGATAATAGTCTTCTACGAGTTTATATGCAATTTAAAGTCACGTTAAGGATATATAAACAAGTTAGGTTGTGACTCAAAATGATAACCGTTTTCCCGAACGCGTTGGTTGCGACTTGTCGCATTCCTATTGGAATTTATACATACTTCCATTAATTAGCCGTGTTGCTAGCAACGTTAGCTAGCGAGGTAGTTAGCACAGCGTGCTAGCTAGGCAACTAGCTTAttctcagctagctagctaacggttaGCTCGTTTTGTGAGAAAGTAAAATGATAATTGTAAGAAGTGTTAGCCTTTAAAATAGCCTCAGCTAACCTGCCTCGGTTGAATGAAGCGCATTAGCTTCATTTGGTTTGATTATATTGACAGGTAGACTGAAAGCAGCTATAGCGATTTATCTTTAAACCAGTGGCGTTATTTCTAAAACTTTTCAGTCATGTTGAATAAAATCTACGAATGGGTCAGCTTTGGTAATGTTCGCAATGGTGTACCAGCTGCGGAGCACTCTGATGCACACCGGGGATCGGGAGATGGTCCGACGAGGAGGAAAAGACCAATTGAATGTTTGGAAGATGGACATAACATCGACCAAGATGGCTTAATCATAAAGAAATCTCGAATGGGAGATCTTATTGACACAGTCAAGGTTGCAGCTGAAGGGGTTAAGAGTCACAGCTTCAGTGTGGCAACATGGATGAGGAACAATGTGAGCCCTGCCTTGAGAAATATACTGCCAGCCTCCCCTGGTCCTCCACCTGGAGAACCTCAGCCACAGCCCTCTACATCAGCAGCAGTCTGGGCTGGGATGCCGATTGTTGAAAGGAACTGTATGGATGAGACATTCGCTGCTCCCTCGACAACTTTGGAGTGGAAAACATCCAAATCGGAATGGTTGCGCAATGAGAAGTCCATCATGGGATCAAAAGTCTGTAGGCGACAAGTATGCATGAGTCCTACACATCGTGAAGTGCCAAAAACAAATGGGCACTCAGTCAACTTGCCACCCTCCATCACCCCTAAACTGCACCCCCCTCCAAGGCTAGGCAGGCCCCTAAACCTCCGACCATATGGAACACCAAGTTTGTATAGTGGGGTGGCAAACAGCTCCTGTACCAGCATGTATGAGAAGACCTTTCCTATCAAAGTTGTGCAGAGCCCAACACACAGCACCTCATCAGGGCGCATGCACAATGCCAGGccctgcagcacagcacaggaGTCTGTCTGTGACGAGGAGAAGGAGGTCTACAGGCAACTTCTGACCATGGTCTCTGGTGGTCAGTCGTCTTTCCTTCACAACGGCAGTTCACACGCCATCGTGAGATCACACAGAGATTTCACCAGCTTCCTGACCACCAGCCGCAGACTGCTACAGTTCTCTTCCCTTAGTGGGTCAGCAGCAGGAGGAACTTCAGAGGGGCCCAGCAGCCCCCCCAGCCCCAGGGTGATGTCTAGCCAGAGCTCTAGCAACCTCCCCAGCCCAGTGGGGGCCTCCAACAGGCCAGAGATCCAGACGTGGTCTCTGGACATGGACCTCAGCTCCAGCAGAGCAGCTCCTCTCACATCAGCCCCATCCCCATCCGCTCTGCAGGATAACTCCTCTCAGGACACACAATCATCAGCTCATGATGGTGATTCGGTAATTATTGTAAATGAGCAAAAGGGTAAAAAGCAAGACAGCTCAAGTGTGCCATGTTTCCAAGCGGAGTTATGGATCAAAGAATTGACTAGTATGTATGACTCCCGGGCGAGAGAAAGACGGAGACAGATAGAAGAGCAGGAGGCCCTGGCTGCCCAGCTGCTGCGACAGCGCCTGTCTGAAGAGGGGCACCGTAGCCCAGATGTGGAGGTCCACGTTCGAGTTCCTTTGGAGAAAGAGGTTCCTTTGACTCTTGTGATAGAAGAACCGAAGCCCTTGGAAGAGAAACCAGAATTCCCTGAACTCACAGAGGAAATGGAGGCTGAGGTGAACAGGGGGCTGAGACGAGGTAATCATGAAGTTTTAAGTGAGGGTTTTGGTCTCAGCCTTACACGCAAAGACCTGCAGACACTCAGCAACCTCAACTGGCTCAATGATGAGGTGATCAACTTTTATATGAACCTGCTGGTGGAGCGAAGCAAGGACCCCAGCCTGCCATCAGTCAACACGTTCAACACTTTTTTCTATCCCAAGCTGCGCAGCAGTGGCTACTCTGCTGTCCGCCGCTGGACCAAAAAGATGGACATCTTTTCTAAAGACATCCTACTGGTTCCTGTCCACTTGGGGGTGCACTGGTGCCTCTCTGTGGTGGATTTCCGTAAAAAGGCTATAATGTACTTTGATTCCATGGGAGGAAACAATGATGAAGCATGCACAATATTGTTTGATTACCTGCAACAGGAAAGTAAGGACAAGAAAGGCAAAGAACTGGATACCTCAGGCTGGACTCTGCACAGCAAAAAGCGCAATGAAATCCCACAGCAGATGAATGGTAGCGACTGTGGAATGTTCACATGCAAATATGCAGATTACATTACCAAAGACAAGCCAATCACATTTACACAGAAACACATGCCCTACTTCAGAAAAAGAATGGTTTGGGAGATTCTGAACCATAAGCTGTTGTGATATCAGTATGAGGATTGTGAACTTGTATGCCATGACGATGGCTGAGCTACTCTCAACAGCAGGATCTACGATCTACGTACAGTAGTCCTGTTCTGGGAAAGACTTGCACACCAGCTGATCAGATCAGGAACCAGCTCTGCTACTCTGCATCCTCTACCGTCTGTCTATCTCTCAACTGATCTTAGATGATGGGATGTTGCTGGAGCACCAAGCACTGCCTCCCagtccttgttttgttttttggtgcACCCATGGAGCATCCGTATAGCAGCTGAAACGCTGCATGTTTTGTAGTGCCCAGCCAGAATTGTACAGACTTGCAAACCATACTCTGAGCTGCAATGTTCAGTTTAATGCAGACATATAatgtttacatgttttgatCTTACAGGGAGATGAGCACATTATGCTGCATCATTTTTATAACAGTAATACTACATTTTGGCGTCTCTGTCAATGTTTGATACTTTTGGTACGTTCAAAGGACGATTTACTTTACCATGTAAACTTTGAATGGCCTCTAGTCTTAAAAATAGTTTCTTTGTATTTAGTCATGAGACCTTTTTTCGTAATATGAACATTTTACctaaaacagaactatttttgtaattaGTTTGATTAAAAGGCACACAAGTCTTCAAACATTGCCTCAGAGTATGATTTATAACGAAATAGAATGTTTTACCTTGCCACGGACCTGCAAGTATAAAAACAGTCTTAGTTACACCTTAAAACACCaggataaaaaaatgtatgttagTCTTGATAAAATATTGTAAATTAAGGTTCAAAGTCTATTTTATGTATGTCAGATTCTTCTTTTACAGCAACTTTTGGGCACATTCAGTCTATTTTGAACTGTGTACATACTTAAAACATATACTGGCTCTTGAACAGTGTAATATACTTTTTCTTTACGCAtttcttatatattttttatctagattcaagtgtgttttagaaaataaattctTGTATTGTGACTGTTCTTTGTGAATTACCTCAAAATCAATTGGTTTTGATATAAAAACTGTCACATTTGATAAACATGAGAACCTGGCCATGTG

Function

symbol description
senp1 Predicted to enable cysteine-type peptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in nucleus. Orthologous to human SENP1 (SUMO specific peptidase 1).

NR:

description
PREDICTED: sentrin-specific protease 1

GO: NA

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800106.1 True 3737 mRNA 0.45 18 21032895 21045968

Neighbor

gene id symbol gene type direction distance location
LOC120558837 faim2,LOC102311007,LOC103362048,LOC102784507 coding upstream 1700 21025140 ~ 21031195 (+)
mfsd5 mfsd5,LOC102784782 coding upstream 9734 21020505 ~ 21023161 (+)
nr1d4a LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972 coding upstream 13603 21007551 ~ 21019292 (+)
calcoco1a calcoco1 coding upstream 72070 20949302 ~ 20960825 (+)
cbx5 cbx5 coding upstream 273450 20755053 ~ 20759445 (+)
lrp1ab LOC103362052 coding downstream 25739 21071707 ~ 21166417 (+)
wnt1 wnt1 coding downstream 217080 21263048 ~ 21268246 (+)
lmbr1l lmbr1l coding downstream 249179 21295147 ~ 21308168 (+)
dhh dhh coding downstream 266584 21312552 ~ 21317922 (+)
kmt2d kmt2d coding downstream 277346 21323314 ~ 21359987 (+)
LOC120558354 NA non-coding upstream 253496 20772453 ~ 20779399 (+)
G51386 NA non-coding upstream 280550 20751595 ~ 20752345 (+)
LOC120558477 NA non-coding upstream 370342 20661297 ~ 20662553 (+)
G51317 NA non-coding upstream 861776 20157789 ~ 20171119 (+)
G51283 NA non-coding upstream 1036779 19995881 ~ 19996116 (+)
G51625 NA non-coding downstream 174683 21220651 ~ 21222557 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding downstream 184302 21230270 ~ 21233529 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 231808 21277776 ~ 21288705 (+)
G51735 NA non-coding downstream 318639 21364607 ~ 21365558 (+)
G51736 acvr1b,LOC105897348 non-coding downstream 319653 21365621 ~ 21366055 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 500326 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 967160 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 1032457 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 1264331 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1569183 19456477 ~ 19463712 (+)
G51716 NA other downstream 243620 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 315322 21361290 ~ 21364430 (+)
G51804 NA other downstream 512922 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 671141 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 737249 21783217 ~ 21807914 (+)

Expression


Co-expression Network