LOC120558837 (faim2,LOC102311007,LOC103362048,LOC102784507)


Basic Information

Item Value
gene id LOC120558837
gene name faim2,LOC102311007,LOC103362048,LOC102784507
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21025140 ~ 21031195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800108.1
GGGTATCTGCACGAGTCTTAACTGCGTTGTTTTGGGATTACATCACCAAATCGTCACAGTGTCCAGTCTGAGCAGGCAAGAAGAACACTATCTATCTGAGTTCCTTTAGCTATAGACTCTGCAAGAACTACACTATCAAGAAGGAGACACCATAGCCCTATTGACTGGTTGGGATACAGAACAAGACAACATACTGCAGGACGACAGACAGGCATCATGACAAAGGGCAAGCTTTCACTTGCAAACAAGGCCACCAATGGCTCCTTCAGTGAAGAAGCCTTAGTGTCACCAGCTCCTCCCAGCTATCAGGAAGCCACCGAGGGCACCAGTGCTCCTTGCTACAGTGATGTTGAGATGCTCACAGAGTTCACCTGGGATGATTGCAACATCAGGAGGGTCTTCATCCGTAAGGTGTACACTATCTTGTTGATCCAGCTTTTGGTCACTCTCGCTATTGTGTCTCTTTTCACATTCTGTGACCCAGTGAAGGACTATATTCAATCCAACCCAGGCTGGTACTGGGCTTCTTACGCTGTGTTCTTTGTCACATATCTCACCTTATCTTGCTGCTCTGCACCAAGGAGACAGTTTCCATGGAATCTGATTCTGCTTGGCATCTTTACCCTCTCACTCTCATACATGACAGGGATGTTGTCCAGCTACTATAACACCAAGTCAGTGGTGATGTGTCTGGGCATCACAGTagcagtctgtctcctggtcacAGTCTTCAGCTTCCAAACtaagTTCGATGTGACATCATACCAAGGCGTgctctttgtcttctgcatGGTCATGTTCGTCTCTGGACTGGTGCTGGCACTCGTCCTCCCCTTCCAATATGTACCCTGGTTGGATGCCACCTACGCTGTCCTGGGAGCCATACTGTTTACCATGTTTTTGGCATTTGACACCCAGCTACTCATGGGGAATAAGCGCTACACCATGAGTCCAGAAGAGTATGTCTTCGCCACTCTCAACCTCTACCTAGATATTATCTACatcttctccttcttcctccaaaTCTTTGGAACTAAACAAGAGTAAACCATCGCCCCACCTATCTTACCTACAGACAAGGAATGGGAATTTAGGCAGAAATAATAAGAGTATTTTAAAATTTTGGTGATTGTGATGACAATGTTTGCAATTGTAAcagctttatttttttgcctGATACAGATAAGGCCACAAATACTTTGTGAGTCTTGTGTATAGCTATACATGTAGATAGATGTATGTCAGTTTTCACTTCCAAAATGTACACaacctttccctcttctctagCATGTCGTGAACCCATACCACATTATGGGGTTAGCTTACTAGTTTTACCAACAAGAAACAATCAGTGATCTTCCTCCATTTAACGTAGATAAAGCATACTGTGAGTGTACATCTGAAGCTGTATGTCTGTCTTTATGTCCTACCTAGATATCACAAATGTCCTGCAAATAATAGATGTCAGTGCTCTTTAAGAGGTATGTGAGCTATAATACATCGTGCATGGCTCTTAAAAAGCTCTAACTATGCCAAGTGTAGTCACCCCATCATTGGGATATTGCTGTGGGTGATGATTTAGTGACGTGACTGAAAGTACaccaaaaaaaaagcttcaaagaCTTTTCCTTTTCATTATGGTCTATGTGTTGGTTTTACTACATTTAACTCTAAGGCTTTCATTCATTGCATTCACCTTGTTGTATTGTTTATAATTAGTATGTCATTTTTCTAATATGTGTGTTTAAACCTGAAATGTTTTGAATGAAGATTGTGTATAATAATCTTTTCATGAAAGGCATTTAGTTTGGACATTTCTTGATTGTTGGCATTATAGTCCTTGGTTTTTATTAATATGGAAACGTATTCAGTTGGTTTGAAGTGGTGACACCATCATGATGATAATAAAattatttaacattaaacatGACAGTGCCATACATGCACAGATTTACTGTAACTTTTGATAAGGCCTGCATTTGTTGAGGGGCTTGAATGCTATTTTTCATGACatgacaagtttatttttttatgacagaATGATATATTTCAGAAAGTGTGTGATATAAAAATGGTGAGTTTGAAGTTTGAAATGAATTCATAAGTTGTCTAAAGTGGCCTTGGACTACCTTTATTTCACAATATTGATGCAGTATATTGCATTGTCCCTGCATTTCATGAAGcatttgtgtttctgtattgatttattaaaggatgaatgtgtgtgaatgga

Function

symbol description
faim2 Involved in regulation of neuron apoptotic process. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Located in membrane raft.

NR:

description
PREDICTED: protein lifeguard 2-like

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800108.1 True 2233 mRNA 0.40 12 21025140 21031195

Neighbor

gene id symbol gene type direction distance location
mfsd5 mfsd5,LOC102784782 coding upstream 1979 21020505 ~ 21023161 (+)
nr1d4a LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972 coding upstream 5848 21007551 ~ 21019292 (+)
calcoco1a calcoco1 coding upstream 64315 20949302 ~ 20960825 (+)
cbx5 cbx5 coding upstream 265695 20755053 ~ 20759445 (+)
nfe2 nfe2,LOC102789365 coding upstream 274449 20745555 ~ 20750691 (+)
si:dkey-21c19.3 senp1,LOC102196255,LOC102311320 coding downstream 1700 21032895 ~ 21045968 (+)
lrp1ab LOC103362052 coding downstream 40512 21071707 ~ 21166417 (+)
wnt1 wnt1 coding downstream 231853 21263048 ~ 21268246 (+)
lmbr1l lmbr1l coding downstream 263952 21295147 ~ 21308168 (+)
dhh dhh coding downstream 281357 21312552 ~ 21317922 (+)
LOC120558354 NA non-coding upstream 245741 20772453 ~ 20779399 (+)
G51386 NA non-coding upstream 272795 20751595 ~ 20752345 (+)
LOC120558477 NA non-coding upstream 362587 20661297 ~ 20662553 (+)
G51317 NA non-coding upstream 854021 20157789 ~ 20171119 (+)
G51283 NA non-coding upstream 1029024 19995881 ~ 19996116 (+)
G51625 NA non-coding downstream 189456 21220651 ~ 21222557 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding downstream 199075 21230270 ~ 21233529 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 246581 21277776 ~ 21288705 (+)
G51735 NA non-coding downstream 333412 21364607 ~ 21365558 (+)
G51736 acvr1b,LOC105897348 non-coding downstream 334426 21365621 ~ 21366055 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 492571 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 959405 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 1024702 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 1256576 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1561428 19456477 ~ 19463712 (+)
G51716 NA other downstream 258393 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 330095 21361290 ~ 21364430 (+)
G51804 NA other downstream 527695 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 685914 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 752022 21783217 ~ 21807914 (+)

Expression


Co-expression Network