pcbp2 (LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433)


Basic Information

Item Value
gene id pcbp2
gene name LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14531154 ~ 14539601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800139.1
AAAGTTGAAttcattttgtcttttgtgCCAAGCAGAAGAGTGGAGTCCGATCGAATAGCGGCGTCTCTTCCCTCTTCCCCGGATCCTTTTAAAACTCCCTCCCGAACCTCTCCCCTTCTACCCTTGCCACCCTACCCAccccctgaacacacttcaCGGGACGGTTCGGACGTTCAACCAGTGACCAAAGACCCACTTTGTTGGCCAGTTTAACTGTGGATTCACCTGCAGAAATGGACTCAAGTCTGGTTGAAGGAGGACTTAATGTCACCTTAACCATCAGACTACTCATGCATGGCAAGGAGGTTGGAAGCATCATTGGCAAGAAAGGAGAATCAGTTAAGAAGATGAGAGAGGAGAGTGGGGCTCGCATCAACATCTCAGAGGGGAACTGTCCGGAGAGGATCATAACCCTCGCGGGACCCACAACCTCCATTTTTAAAGCCTTCTCAATGATCATTGAGAAACTGGAGGAGGACATTAGCACCTCAATGACTAACAGTACAGCCACCAGCAAACCACCAGTCACCATGCGTCTCGTTGTGCCTGCCAGCCAGTGTGGCTCACTCATTGGTAAGGGTGGATGCAAGATCAAGGAAATCAGAGAGTCAGCAGGAGCTCAGGTACAAGTAGCAGGGGACATGTTGCCCAACTCAACAGAGCGTGCCATCACCGTTGCAGGGACCCCACAGTCCATTATCGAGTGTGTCAAGCAAATCTGCGTGGTCATGCTTGAGTCTCCACCAAAGGGAGTGACCATCCCATACAGACCCAAACCCTCAGGCTCTCCTGTCATTTTTGCAGGTGGTCAGGCCTACGCTGTCCAAGGGCAGCACGCCATTCCACAGCCTGATGTAAGTGAAGGGCCCTCTCTCACCAAACTTCACCAGCTGGCCATGCAGCAGAGCCCCTTCCCCATTGCACATAGCAACCAGGGCTTCCAGGCTGGGATGGACGCCTCTGCACAAACTGGCTCTCATGAGCTGACCATTCCAAACGATCTCATTGGCTGCATCATTGGCCGTCAGGGCGCAAAGATCAATGAGATCCGTCAGATGTCAGGGGCTCAGATCAAGATTGCCAACCCCGTGGAAGGCTCCACTGACAGGCAGGTCACCATCACTGGCTCCCATGCCAGTATCAGCCTGGCCGAGTACCTGATCAATGCTCGGCTCTCTTCTGAAGCTACTGGACTCGCAGCCAACTGACATGGAGGATCGTCATCAGCACCTAACGTAACCCCTCCCCCTACTTTTTACCAAGAGGTCCCTTATTGAACTTAATGCAAAAACCAAGTACTATAAACTCACTGTTTTCTCCTCTGCTTTGGTTAGACACCTACTCAGTTGTAACTACACCATCATCATGATattggtattttttatttatttattgtttttaaattccCTTTGCATATAGTTTTCGAAGACTCCcttctgttgtatttttttcctcttattttactgtatatctgtatgaTCTTCTTGATATAGGTAAAGTTTTAGAAAAATCTGAAAAGgcataaataatgtttttcttaTGTCAGATTTTTcttagaaaaatgtaaaaaatgaagaaaaaaagacacaataGATGGACTgttctttcccttttttaaatatctatttatttttatttaatacacAGCAACGTGTAAGAGTAGAATTCATTGATATTTGCCATCTTCTATTTGAAGCTGTACTTCCTGAATGAGGCATTGTGGGTTTAACGGGTTTCGATGGGTGTAAATGATCTCCAGGTGAAGATGTATGCAGGAAAAACCTTTTTAGTCAGAAGGTAATTTATCACTTGTTGAATGTTCAAAGGAGAATTTTAAGCTACATTTTTGTCTCACCTCTAATTTGCTGAGTAATTGTTTTGTGTCATTCCTGTTTCCATCCGTTTTATTTCTCGATCAGGACTTTTGAGCATTGTTGTGTATTGGATTCTGATAAGGGTGGGTGGGCCTTGGTCACCAGGTGTGGGCCTGAATGAGaggaaaatattttcttttctctgaaattacTATGACCATAGTAATGACGATGACgatgataataataacattgaaatgtttgttttaaatagagaaaatattttttttaactgcaggGCTGGGGAATGCTGCAAGGGGCAAAACTACAAGACATATTGGTCTTTATAAGTATATTATGCTGAGGTATTAAATTATGATTAACTAGAAGGAGAATTATAGAATTAACACTAGTTTCCTGCTATCCTTTTTTTTGCCTGggtcagattttattttttattattctttgcaGGATGAAGAAACTCACGTTTTTTGTGCACGTTTTCAAAGTATTGTAGATCTGGGTGCAATTGAATTGTTGAAGAAATGAaatgcagaaataaaaaaagatgtgaAATGCTTAAACAA
>XM_039800140.1
AAAGTTGAAttcattttgtcttttgtgCCAAGCAGAAGAGTGGAGTCCGATCGAATAGCGGCGTCTCTTCCCTCTTCCCCGGATCCTTTTAAAACTCCCTCCCGAACCTCTCCCCTTCTACCCTTGCCACCCTACCCAccccctgaacacacttcaCGGGACGGTTCGGACGTTCAACCAGTGACCAAAGACCCACTTTGTTGGCCAGTTTAACTGTGGATTCACCTGCAGAAATGGACTCAAGTCTGGTTGAAGGAGGACTTAATGTCACCTTAACCATCAGACTACTCATGCATGGCAAGGAGGTTGGAAGCATCATTGGCAAGAAAGGAGAATCAGTTAAGAAGATGAGAGAGGAGAGTGGGGCTCGCATCAACATCTCAGAGGGGAACTGTCCGGAGAGGATCATAACCCTCGCGGGACCCACAACCTCCATTTTTAAAGCCTTCTCAATGATCATTGAGAAACTGGAGGAGGACATTAGCACCTCAATGACTAACAGTACAGCCACCAGCAAACCACCAGTCACCATGCGTCTCGTTGTGCCTGCCAGCCAGTGTGGCTCACTCATTGGTAAGGGTGGATGCAAGATCAAGGAAATCAGAGAGTCAGCAGGAGCTCAGGTACAAGTAGCAGGGGACATGTTGCCCAACTCAACAGAGCGTGCCATCACCGTTGCAGGGACCCCACAGTCCATTATCGAGTGTGTCAAGCAAATCTGCGTGGTCATGCTTGAGTCTCCACCAAAGGGAGTGACCATCCCATACAGACCCAAACCCTCAGGCTCTCCTGTCATTTTTGCAGGTGGTCAGGCCTACGCTGTCCAAGGGCAGCACGCCATTCCACAGCCTGATCTCACCAAACTTCACCAGCTGGCCATGCAGCAGAGCCCCTTCCCCATTGCACATAGCAACCAGGGCTTCCAGGCTGGGATGGACGCCTCTGCACAAACTGGCTCTCATGAGCTGACCATTCCAAACGATCTCATTGGCTGCATCATTGGCCGTCAGGGCGCAAAGATCAATGAGATCCGTCAGATGTCAGGGGCTCAGATCAAGATTGCCAACCCCGTGGAAGGCTCCACTGACAGGCAGGTCACCATCACTGGCTCCCATGCCAGTATCAGCCTGGCCGAGTACCTGATCAATGCTCGGCTCTCTTCTGAAGCTACTGGACTCGCAGCCAACTGACATGGAGGATCGTCATCAGCACCTAACGTAACCCCTCCCCCTACTTTTTACCAAGAGGTCCCTTATTGAACTTAATGCAAAAACCAAGTACTATAAACTCACTGTTTTCTCCTCTGCTTTGGTTAGACACCTACTCAGTTGTAACTACACCATCATCATGATattggtattttttatttatttattgtttttaaattccCTTTGCATATAGTTTTCGAAGACTCCcttctgttgtatttttttcctcttattttactgtatatctgtatgaTCTTCTTGATATAGGTAAAGTTTTAGAAAAATCTGAAAAGgcataaataatgtttttcttaTGTCAGATTTTTcttagaaaaatgtaaaaaatgaagaaaaaaagacacaataGATGGACTgttctttcccttttttaaatatctatttatttttatttaatacacAGCAACGTGTAAGAGTAGAATTCATTGATATTTGCCATCTTCTATTTGAAGCTGTACTTCCTGAATGAGGCATTGTGGGTTTAACGGGTTTCGATGGGTGTAAATGATCTCCAGGTGAAGATGTATGCAGGAAAAACCTTTTTAGTCAGAAGGTAATTTATCACTTGTTGAATGTTCAAAGGAGAATTTTAAGCTACATTTTTGTCTCACCTCTAATTTGCTGAGTAATTGTTTTGTGTCATTCCTGTTTCCATCCGTTTTATTTCTCGATCAGGACTTTTGAGCATTGTTGTGTATTGGATTCTGATAAGGGTGGGTGGGCCTTGGTCACCAGGTGTGGGCCTGAATGAGaggaaaatattttcttttctctgaaattacTATGACCATAGTAATGACGATGACgatgataataataacattgaaatgtttgttttaaatagagaaaatattttttttaactgcaggGCTGGGGAATGCTGCAAGGGGCAAAACTACAAGACATATTGGTCTTTATAAGTATATTATGCTGAGGTATTAAATTATGATTAACTAGAAGGAGAATTATAGAATTAACACTAGTTTCCTGCTATCCTTTTTTTTGCCTGggtcagattttattttttattattctttgcaGGATGAAGAAACTCACGTTTTTTGTGCACGTTTTCAAAGTATTGTAGATCTGGGTGCAATTGAATTGTTGAAGAAATGAaatgcagaaataaaaaaagatgtgaAATGCTTAAACAA

Function

NR:

description
PREDICTED: poly(rC)-binding protein 2-like isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13162 PCBP2; poly(rC)-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800139.1 True 2401 mRNA 0.43 13 14531154 14539601
XM_039800140.1 False 2383 mRNA 0.43 13 14531154 14539601

Neighbor

gene id symbol gene type direction distance location
scube3 scube3 coding upstream 128614 14325802 ~ 14402540 (+)
LOC120559736 NA coding upstream 213368 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 225543 14231135 ~ 14305611 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding upstream 346014 14145227 ~ 14185140 (+)
oard1 oard1,LOC106909399 coding upstream 873778 13655553 ~ 13657376 (+)
aaas aaas coding downstream 12632 14552233 ~ 14561394 (+)
LOC120559201 gls2,LOC104942574 coding downstream 60676 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 80547 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 136671 14676272 ~ 14684010 (+)
LOC120558822 NA coding downstream 164092 14703693 ~ 14705687 (+)
G49743 NA non-coding upstream 5965 14518774 ~ 14525189 (+)
G49720 NA non-coding upstream 113491 14411367 ~ 14417663 (+)
G49717 NA non-coding upstream 121992 14403895 ~ 14409162 (+)
G49718 NA non-coding upstream 127608 14402706 ~ 14403546 (+)
G49665 NA non-coding upstream 300760 14229645 ~ 14230394 (+)
G49761 NA non-coding downstream 5794 14545395 ~ 14546722 (+)
G49762 NA non-coding downstream 7263 14546864 ~ 14547095 (+)
G49764 NA non-coding downstream 11709 14551310 ~ 14551559 (+)
G49775 LOC107731244 non-coding downstream 28724 14568325 ~ 14569597 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding downstream 45848 14585449 ~ 14590776 (+)
uhrf1bp1 uhrf1bp1 other upstream 303266 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 410132 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 806164 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 996232 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 1644930 12860721 ~ 12886224 (+)
G49773 LOC103358639 other downstream 25266 14564867 ~ 14567456 (+)
G49776 NA other downstream 34941 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1232616 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1236616 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1346389 15885990 ~ 15969331 (+)

Expression


Co-expression Network