LOC120558918 (LOC103360403)


Basic Information

Item Value
gene id LOC120558918
gene name LOC103360403
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20059114 ~ 20061812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800272.1
acaAACAAtcttcataaaaatgtaaaccactCCCACTCTAGCACACTCGTGGAGGCTTGGCCAAAAGTGTGCAAAGACTATAAGAGAGGGGACGTCCAGGTGGAGCATGACACAGGTGAATCATTCAGATTTTCATGTCTCCACCCGCTACTGCCTGAGGATACTACTTCGCTGTACCAGACACAGGAGCATACACCCCTGACTTCACAAGAATATCCTTTAAGTATGCTGGCAGAAATGGAGACGATGGCTTATGTGACTGAGATCCGGCTGAGCGGAAGTCGGGGGGCCTGGAGCGGAGTGGCTCCCTCCTCCTGCCCTGAGGTGGACCTGGAGGTCATTGAGGAGTACCTGCAGGAGCACTCGCTGGAGGTCCAGCCTGCACACACACCGTCATCACCTCCGACCACCATGgggcaacaaacacacacacactcccaccaaGGCACCAGGATCATAGAGAATAGCTGGTCAGGCCAGCATCCATATGAGTGGCACTGTGGCTCTCACACTCCTAACGAGGAATATGAAGAGCAAGCCCTGCCTTCAGCCTGGCCTAGCCCCCATGACAACCAATGGAACCACATTGCGTATTACGAGGCACCTGCATACATTGACTCAGACTCGCTGTCCAGTAGCTCCCAGTACCAGGAATACCAAGATTCCCCATCACCATCATCTGACAGGGGATGCAGGAAGGACAGAGACTCCCTGCCTCTTGTCCCACTTTCagGAAAGAGGAAGGAGCGGTTGTTCCAGTTCCTGTTCGAGATGCTCCAGACTCCATCGATGCGGAGCTGCATCTGGTGGGTCCAGTCGTCTTCTGGCACGTTCCAGTTCTCCTCCCAAAACAAGGAGCGCCTGGCGCAGCTGTGGGGCCGGCGAAAAGGTAATCGCAAGACCATGACCTACCAGAAGATGGCACGGGCGCTGAGGAACTATAACCGCAGCGGCGAGATTCAGAAGGTGAAGCGGAAGCTCACCTACCGGTTCGATGAGAAGACGCTGAGAGGCTTACAAGGAGACTCTAATACAGTGTAGAAAGCATGATGAAGAGTGTACATCAGCAAAGAAACAGACTAAGCACAATGGATATTTAGATGTTTGTCCCATTAATGTCCTATCTGTTGATTCTAATTCCATGGCATGTAGAAAACAAATGAATACTGAGTATTTGAAAAGCCAGAAGATTAAAACACTGTAGGTCAGACTGGCATTCAAAATTATGTAAATCTAAAAGGTTATCACATAATATCTACTTTATAAGTAGAATTTATTTTGTTCTTAAAATAACAGgtgtggttttctttttttgtgattctGTATTGCAGATATGAAGCAGATACGAGACCATTTTAAAGACTTAATTAGGTTGTGTGAACAA

Function

NR:

description
PREDICTED: transcription factor Spi-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800272.1 True 1384 mRNA 0.48 6 20059114 20061812

Neighbor

gene id symbol gene type direction distance location
ube2t ube2t coding upstream 55002 20001149 ~ 20004112 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding upstream 82919 19973203 ~ 19976195 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding upstream 108093 19942024 ~ 19951021 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding upstream 133678 19919394 ~ 19925436 (+)
LOC120558919 LOC104941542 coding upstream 265889 19792180 ~ 19793225 (+)
tead3a tead3,LOC106925412,LOC103467419,LOC102294501,LOC100690839 coding downstream 17461 20079273 ~ 20095601 (+)
LOC120558885 NA coding downstream 39100 20100912 ~ 20119745 (+)
LOC120558875 NA coding downstream 112345 20174157 ~ 20271307 (+)
mybpha LOC103360415,LOC102302078 coding downstream 209826 20271638 ~ 20290632 (+)
LOC120558877 NA coding downstream 230910 20292722 ~ 20307269 (+)
G51283 NA non-coding upstream 62998 19995881 ~ 19996116 (+)
G51282 NA non-coding upstream 66921 19990773 ~ 19992193 (+)
G51221 NA non-coding upstream 253821 19778068 ~ 19805293 (+)
G51220 LOC105935863,LOC107390966,LOC108235152 non-coding upstream 257537 19769075 ~ 19801577 (+)
G51218 NA non-coding upstream 296635 19762177 ~ 19762479 (+)
G51317 NA non-coding downstream 95977 20157789 ~ 20171119 (+)
LOC120558477 NA non-coding downstream 599485 20661297 ~ 20662553 (+)
G51386 NA non-coding downstream 689783 20751595 ~ 20752345 (+)
LOC120558354 NA non-coding downstream 710641 20772453 ~ 20779399 (+)
G51625 NA non-coding downstream 1158839 21220651 ~ 21222557 (+)
zgc:194242 NA other upstream 58676 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 290550 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 595402 19456477 ~ 19463712 (+)
G50983 LOC103366028 other upstream 1372812 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1758781 18255892 ~ 18300333 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 2180 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 384159 20445971 ~ 20532569 (+)
G51716 NA other downstream 1227776 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 1299478 21361290 ~ 21364430 (+)
G51804 NA other downstream 1497078 21558890 ~ 21559349 (+)

Expression


Co-expression Network