LOC120558919 (LOC104941542)


Basic Information

Item Value
gene id LOC120558919
gene name LOC104941542
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19792180 ~ 19793225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800273.1
ATGGACACCCTTGATCTTTTCAGATATTCACAAAGGAGAGGAACAGGGCAGAATTGGGGAACTGAGAGGACACAACGAGAGGAAGAATCCAGACACATAAAGATCATCTCATTTGAAAAAGAGAGCACAGATTTATTGGATTATTAGATTGGATTGGAACTGAAATAACTTAATCTGCAATCAAATCTTTCACACTTAAATGCATATTGTCGTCATTGGGCATCTCTGTAGGCCTAATTGCATGAACGACATAATGTCAagCATGGGTTTGTTAGTGGTGAAATGCATGCTGCTGTGTGCATTGATGCATGGAGCGGTGTGTGCCTGTATGCTGAAGAATCACACCATATGGATTGAGAGGCACGACTGTGGCCAGTGTGTGGCCATCAACACTACCATCTGCAGCGGCTACTGTTACACACAGGACACCAATTTGAGGGGACGGCTTGGGAGGAGTTTCCTGATCCAGCGCAGCTGTGTGCCTCTGTCCTTGGTGTACCGAGCTGCCCATGTGCCAGGCTGCCCTCAGGATGTCAGCCCTCAGCTGTTTTATCCTGCGGCCAACCGCTGCAGCTGCAGGCGCTGCAACACGCGCACACATCACTGGTGCTCGCAACAGCCGGATCCCTAA

Function

NR:

description
PREDICTED: thyrotropin subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800273.1 True 631 mRNA 0.49 3 19792180 19793225

Neighbor

gene id symbol gene type direction distance location
wnt5a wnt5a,LOC103367232,LOC102799772 coding upstream 376990 19366783 ~ 19415190 (+)
LOC120559318 NA coding upstream 464626 19241532 ~ 19327554 (+)
tlr9 NA coding upstream 551571 19235549 ~ 19240609 (+)
apeh NA coding upstream 556794 19225260 ~ 19235386 (+)
LOC120559315 LOC103367228,LOC104955723 coding upstream 571245 19205219 ~ 19220935 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding downstream 126169 19919394 ~ 19925436 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding downstream 148799 19942024 ~ 19951021 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding downstream 179978 19973203 ~ 19976195 (+)
ube2t ube2t coding downstream 207924 20001149 ~ 20004112 (+)
LOC120558918 LOC103360403 coding downstream 265889 20059114 ~ 20061812 (+)
G51218 NA non-coding upstream 29701 19762177 ~ 19762479 (+)
G51182 NA non-coding upstream 33489 19698081 ~ 19758691 (+)
G51215 NA non-coding upstream 72743 19716772 ~ 19719437 (+)
G51212 NA non-coding upstream 77501 19712766 ~ 19714679 (+)
G51206 uba1 non-coding upstream 84680 19702097 ~ 19707500 (+)
G51282 NA non-coding downstream 197548 19990773 ~ 19992193 (+)
G51283 NA non-coding downstream 202656 19995881 ~ 19996116 (+)
G51317 NA non-coding downstream 364564 20157789 ~ 20171119 (+)
LOC120558477 NA non-coding downstream 868072 20661297 ~ 20662553 (+)
G51386 NA non-coding downstream 958370 20751595 ~ 20752345 (+)
LOC120558920 LOC104941542 other upstream 23616 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 328468 19456477 ~ 19463712 (+)
G50983 LOC103366028 other upstream 1105878 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1491847 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 2005782 17741371 ~ 17786398 (+)
zgc:194242 NA other downstream 203252 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 270767 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 652746 20445971 ~ 20532569 (+)
G51716 NA other downstream 1496363 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 1568065 21361290 ~ 21364430 (+)

Expression


Co-expression Network