cbx5 (cbx5)


Basic Information

Item Value
gene id cbx5
gene name cbx5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20755053 ~ 20759445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800291.1
GCTTTTCTACGCACAGACAAGCCTACGCACAGCACCTTCATAAATGATCCAGGGCAGGCTAGATGCTAAAGTAGCCCCAGCGTTAGCTTTGAACATCGTATAACCACAAAAGACGCGTTATCCCTGAAGTGAACTGTTCAAGACCGGCGGTCTACACGTCCAAGGGGAAGTGCCATTGGCCTGCGACAGCGTAGTGTTCAGCAACAAACTTTGCTATGGGCAAAAAGTCACGCGAAGAGGACTCCTCATCCTCTGATGAGGAAGAATATGTGGTGGAGAAGGTGCTGGACAGGAGGGTGGTGAAAGGCAGGGTTGAGTTCTTCCTGAAGTGGAAAGGATATTCAGAAAAGCACAACACCTGGGAGCCAGAGAAAAATCTGGACTGTCCTGAGCTTATTTCAGAATTCATGAAGACGTACaagaaaagcagcagcagcagcagtggtggaagcTCCACTCCTAGCAGTGGGGGCAGCAAATCAGTCACATCCTCCTTGGCACGCTCCAAAGACTCGAGTAGCTTGAAGAAGAGAAGCTCTGATGACGATGAGGAGGGTGGAAGTAAGcccaagaagaagaaggagGATGACATTCTAGTTGCACGTGGCTTTGAGAGAGGACTTGAGCCAGAGAAGATCATTGGAGCAACTGACTCGTGTGGAGACCTAATGTTTCTTATGAAGTGGAAAGACTCTGATGAGGCTGATCTCGTGCTTGCCAAGGAGGCCAATCATAAGTGCCCACAAATTGTCATAGCATTCTACGAGGAACGTCTCACCTGGCATGAAGACAGCGACAAGAAGGAGAAGGACGTGGTCAGTGCATGAGTGCATCACCTCTGGAGGAAACCGTACCACCTCCACTGCAGGGACAACCTTGAGTCAGACATTTTTCACACCCAAACCTCCCATCCTTGCTCTTCACCATGTCCAACAAAGACAGCGAACACAGTCGTGTTATCTCCACCCATGCCCCACTGGAGGACAGGGGAAGCTGTAGCGGACATGGGTGACATGCTACTGGGGAGGTTTTCTGCTGTTCTgtctttgtattttctttgtatTCTTTTACCTTCTTTTTAATGTCTTTAACACATGTTTTAGTGCTTACAAGTTACAGTTGTGTCAGTAAGGTATGTTTCATCTATGAGCACATGGCCATCTGTTAAAACTCAGAACAGTCTTGAGAGCTTGGTTCAAGCGGTGCTACCTATGAGCTTGCCCCATGGCAGGTGCACAACCCCCATCATCAAGTCTTTACAGGCAGTGTACCTCTTTGCTTTAAGAACCCACTAACACCACTGAGGATAAAACCGCAGTATCAATATTCAGGAAGCAACCACCGCAGCACTTTCCTGACTGCATAATCGCTTCCTTTTTAAAAcgaataaacaaaaaaaaactatctctTGTAGATTTTTCAGTTTGTCCTCTCTACCAGGATATGACTGCTCAATTTGCAAATGTGCAGATGACGCCGGCCAATTATCTCTTAATAATGTAGTGATGATATCCttgtgagttgttttttttttttttttttatctctttccaAGTTTAACATGTAAACGTGTGgtttttaatttctttgttaTCACCAGTAAATGGAcagcaaaaaaaatgttgtgctgTTTTCAaccagttttttgtttttaaactgcaGTGTTATTTGGACCAGTCTCATGTTCACACATTGGACAATCTTCACTGTATCCACATGGAATGAAACCAGCACTCATCACCAATCTTTGGGGTCTGCCACCTTGTGGTTAAATATTGAAAGTCTCTTGACCATTTGACCATATCTGACAACCCTGCAGTTTTAATGGTGTATTTGATTTTGTTGGTGATTTATcatagattttcttttcttttttctttttacagtgaAAATTGGAGAAATTCACTCCGCAATTAGCTAGTAGTATTTTATCATTGGAATCGTtgatttgaaacattaaaaaaaacagtttctgATTAGATTATGCATATCCTGGCTTTTATTGTGGTGActaattttattttcatcaagtatttacattttttcagATGGAAGAAGTTGCTACATGACAATAGGTCATTCTTATACAAAAGATGGATGCTGGTTTTATAGTTTGAAATGCTGTGCTCCAAGATGAACTCTTAGGACCAAATGTTTAGTGTCTACAGactgagatgttttttttttttttttttggctttaatCAGCCTTCTAAAGGAAGGCTGTGACCTTCTCCCTTTCATGCATACAGTAAATGTATCATGTCCCTTATCACTAAGATTATGGTTTTGgggtaatttcctttttttattaaatatattttgtccTTTCACACCCTTGAGCTTTGTCCTCAGTTTTTGCTGGTGCCGAATTTTTAAAAGGTAGACTATTTCTTGTGTCGACTAAATGTTACAAATATGTGTACAGTAGCCCCctttaataaacattttcaatgttAAA

Function

symbol description
cbx5 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

NR:

description
chromobox protein homolog 5-like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11587 CBX5, HP1A; chromobox protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800291.1 True 2460 mRNA 0.41 5 20755053 20759445

Neighbor

gene id symbol gene type direction distance location
nfe2 nfe2,LOC102789365 coding upstream 4362 20745555 ~ 20750691 (+)
znf740b znf740,LOC100692539,LOC101474992 coding upstream 34596 20713382 ~ 20720457 (+)
csad csad coding upstream 42789 20706757 ~ 20712264 (+)
zgc:174906 NA coding upstream 49244 20700761 ~ 20705809 (+)
LOC120558879 NA coding upstream 345699 20397340 ~ 20409354 (+)
calcoco1a calcoco1 coding downstream 189857 20949302 ~ 20960825 (+)
nr1d4a LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972 coding downstream 248106 21007551 ~ 21019292 (+)
mfsd5 mfsd5,LOC102784782 coding downstream 261060 21020505 ~ 21023161 (+)
LOC120558837 faim2,LOC102311007,LOC103362048,LOC102784507 coding downstream 265695 21025140 ~ 21031195 (+)
si:dkey-21c19.3 senp1,LOC102196255,LOC102311320 coding downstream 273450 21032895 ~ 21045968 (+)
G51386 NA non-coding upstream 2708 20751595 ~ 20752345 (+)
LOC120558477 NA non-coding upstream 92500 20661297 ~ 20662553 (+)
G51317 NA non-coding upstream 583934 20157789 ~ 20171119 (+)
G51283 NA non-coding upstream 758937 19995881 ~ 19996116 (+)
G51282 NA non-coding upstream 762860 19990773 ~ 19992193 (+)
LOC120558354 NA non-coding downstream 13008 20772453 ~ 20779399 (+)
G51625 NA non-coding downstream 461206 21220651 ~ 21222557 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding downstream 470825 21230270 ~ 21233529 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 518331 21277776 ~ 21288705 (+)
G51735 NA non-coding downstream 605162 21364607 ~ 21365558 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 222484 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 689318 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 754615 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 986489 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1291341 19456477 ~ 19463712 (+)
G51716 NA other downstream 530143 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 601845 21361290 ~ 21364430 (+)
G51804 NA other downstream 799445 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 957664 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 1023772 21783217 ~ 21807914 (+)

Expression


Co-expression Network