mmp23ba (mmp23b)


Basic Information

Item Value
gene id mmp23ba
gene name mmp23b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29741558 ~ 29751592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800306.1
CGGAAGAGAGCAGAGCTGATGCAGTCTGCACTGCTTTCACTACCCGGTCCGTATGGTCCGCAGGTTTAACTGCGCTGCCGCACACAGCACCAGCAGCTACCCACGTAGCAGCACACTGCCGAAACGGGCAATGGCCAAGAAGTAGGGTTCACGGGCATTTATGGTAAAACCTGTGTAGTGTTCGCTGAGggattatttgattattattttttcctggAGGTGTGATATCGCAGCCATGGTGTGCTGTCAGACTCCCAGAAGTTTACGCTGGGGCGACTGGGGCTTCGCTCCTCTGCTGGCTGCCGCGCTGCTCAGTCTTCTGTTCGCAGGGATGCAGCAAACCACAGCTTTTCCCTCCTGGAGGTTAGAGGAAGAAGCTTACACCACTGTGTTGCTCATCGGGATCCGCAAAGAGGCCCGGTCACAAGTGCTTCACCTCTCCAGGAACAAGCGCTACACCCTCACCCCGGAGCAGCTCAAATGGGACAAGTTCAAGCTAACATACAAGTTGCTCTCCTACCCTACAAACTTGATAAATGCCAGTGACACGCGTCGAGGCATCGCCAAGGCTTTTGGCATGTGGAGCGACGTCTCACCTTTCAGCTTCAGAGAGGTGCCAGCTGACCAAGAAGCAGCCATTAAGATCGGCTTCTACCCCATCAACCACACGGACTGTCTGCAGTCCTACTTGCACCATTGTTTCGACGGCATCACAGGAGAATTGGCTCATGCTTTCTTCCCGCCAACTGGCGAGATTCACTTCGACGACCACGAATACTGGATTCTGGGAAACATGCGCTTTAGCTGGAAGAAAGGGGTTTGGCTGACGGATCTTGTCCATGTGGCAACTCACGAAATTGGCCACGTCCTGGGACTCATGCACTCCTTGGACCCGAAAGCCATAATGCACCTGAATGCAACTCTGACGGGGCGCAAGCTGATCACACAGGATGATGTGTGGGGTTTGCACCGTCTCTACGGATGTTTGGACCGCTTATTTATCTGTCCGGCCTGGGCTCGGAAAGGCTATTGCGACAGCAAGCGTAAACTGATGCAGAAGCACTGCCCCTCCAGCTGTGATTTCTGTTACGAATTTCCTTTCCCCACTGTGGCTCCCACCGTGACACCCCCGAGGACCAAGCACAAGCTGGTCGTCGAGGGCAAGAAGCTCACTTTTCGATGTGGGAAGAAAATAGCATCGAAGAAAGGCAAAGTATACTGGTACAAGGACGGCGAGCTGCTGGAGTTCTCTCACCCAAACTACATCTCCCTGAAAGATGACCACATTACCATAGTGGCCAACGCCATCAACGAAGGCACGTACACCTGCATCGTgaagaaaaaagacaaagttCTCACAAACTACTCCTGGAGAGTGCGTGTGCGCTTCTGAAGGCTTCCGCACAATGAACAGGACGCATTTACACACATACGCTCACAAGGACACCTCATTCACCCATGggcacatatttttttttagtcttTCCTTGTATCTTCCGCAAACAACTGTCTATCGTTGATTGTAACTGTGTAAATGCGTTTTTAATAGGTGCAAATAAATGTTACGTGACAAGTAGAA
>XM_039800307.1
CTGGGGCTTCGCTCCTCTGCTGGCTGCCGCGCTGCTCAGTCTTCTGTTCGCAGGGATGCAGCAAACCACAGCTTTTCCCTCCTGGAGGTTAGAGGTATGctgtgaccacttcataataTAAGCTTACACCACTGTGTTGCTCATCGGGATCCGCAAAGAGGCCCGGTCACAAGTGCTTCACCTCTCCAGGAACAAGCGCTACACCCTCACCCCGGAGCAGCTCAAATGGGACAAGTTCAAGCTAACATACAAGTATTCATTTGCAATTCGTCCTCTTGTCAACACAACAGCAAAGTACAGTTGTAGAAAatggaagataaaaaaaaaaaaatagctgaaAAACAGCATAGTGAGGTAGACTGGTGTTGGTTTTGGCAGGAAAACAGATATTTTTTTCAGTTGAAGTAGGCATTATCAAATGAAAACAGGAATTTTTTACCTTAGAGCTTACCTCTTACCTAAGAGCTTAGTCGATCCATTTAAGGTTGTAGGGCCAACAACAGTCACTTACAGAACTCTCTGCTCGCATTTGTCAGAGGGGAAAATAAAGTAGTATATGGTGGACTCTTGCACCCACACTGCAAttgattggttaaaaaaaattggattgTGCTGCATTAACTGTTTGGAGAAGATCCAATGACACTTTGTTCACTCTGGAACTGTGCAAAGATGATCCCATTAAGTCCTTTATAAGAAGATTGGATTTAACCAAAGAGGTGTGATCACTGGGTTTTGGTGAACAAACTTTAGTGGACAGTGGACCAAAATATTAGCCAAATTTCAGTCGTTCCCTGAGTTAGTAAAACAACATCTTCATCTCTTCCATATTGACAGTGGATGTTACCGACTGATCACTATCTGATTAGTATTAAAAGTATCCATATCGGTCTAAGCCTAGCCGAGATATAAGAGATTATCAAGTAATGGAGCTGTTTGCAGTGCTTGTGGGAATTCTGTCTGAACAGTAGCCATTGTGTTTTGGCAGATTCCTCTGCTGTGGAAGAATGTGTGTAGCGGCCAGTAATAACCACATAATGCTGTTGTTTCTGAGCAGGTTGCTCTCCTACCCTACAAACTTGATAAATGCCAGTGACACGCGTCGAGGCATCGCCAAGGCTTTTGGCATGTGGAGCGACGTCTCACCTTTCAGCTTCAGAGAGGTGCCAGCTGACCAAGAAGCAGCCATTAAGATCGGCTTCTACCCCATCAACCACACGGACTGTCTGCAGTCCTACTTGCACCATTGTTTCGACGGCATCACAGGAGAATTGGCTCATGCTTTCTTCCCGCCAACTGGCGAGATTCACTTCGACGACCACGAATACTGGATTCTGGGAAACATGCGCTTTAGCTGGAAGAAAGGGGTTTGGCTGACGGATCTTGTCCATGTGGCAACTCACGAAATTGGCCACGTCCTGGGACTCATGCACTCCTTGGACCCGAAAGCCATAATGCACCTGAATGCAACTCTGACGGGGCGCAAGCTGATCACACAGGATGATGTGTGGGGTTTGCACCGTCTCTACGGATGTTTGGACCGCTTATTTATCTGTCCGGCCTGGGCTCGGAAAGGCTATTGCGACAGCAAGCGTAAACTGATGCAGAAGCACTGCCCCTCCAGCTGTGATTTCTGTTACGAATTTCCTTTCCCCACTGTGGCTCCCACCGTGACACCCCCGAGGACCAAGCACAAGCTGGTCGTCGAGGGCAAGAAGCTCACTTTTCGATGTGGGAAGAAAATAGCATCGAAGAAAGGCAAAGTATACTGGTACAAGGACGGCGAGCTGCTGGAGTTCTCTCACCCAAACTACATCTCCCTGAAAGATGACCACATTACCATAGTGGCCAACGCCATCAACGAAGGCACGTACACCTGCATCGTgaagaaaaaagacaaagttCTCACAAACTACTCCTGGAGAGTGCGTGTGCGCTTCTGAAGGCTTCCGCACAATGAACAGGACGCATTTACACACATACGCTCACAAGGACACCTCATTCACCCATGggcacatatttttttttagtcttTCCTTGTATCTTCCGCAAACAACTGTCTATCGTTGATTGTAACTGTGTAAATGCGTTTTTAATAGGTGCAAATAAATGTTACGTGACAAGTAGAA
>XM_039800308.1
ATGCAGCAAACCACAGCTTTTCCCTCCTGGAGGTTAGAGGTATGctgtgaccacttcataataTGAAGAAGCTTACACCACTGTGTTGCTCATCGGGATCCGCAAAGAGGCCCGGTCACAAGTGCTTCACCTCTCCAGGAACAAGCGCTACACCCTCACCCCGGAGCAGCTCAAATGGGACAAGTTCAAGCTAACATACAAGTATTCATTTGCAATTCGTCCTCTTGTCAACACAACAGCAAAGTACAGTTGTAGAAAatggaagataaaaaaaaaaaaatagctgaaAAACAGCATAGTGAGGTAGACTGGTGTTGGTTTTGGCAGGAAAACAGATATTTTTTTCAGTTGAAGTAGGCATTATCAAATGAAAACAGGAATTTTTTACCTTAGAGCTTACCTCTTACCTAAGAGCTTAGTCGATCCATTTAAGGTTGTAGGGCCAACAACAGTCACTTACAGAACTCTCTGCTCGCATTTGTCAGAGGGGAAAATAAAGTAGTATATGGTGGACTCTTGCACCCACACTGCAAttgattggttaaaaaaaattggattgTGCTGCATTAACTGTTTGGAGAAGATCCAATGACACTTTGTTCACTCTGGAACTGTGCAAAGATGATCCCATTAAGTCCTTTATAAGAAGATTGGATTTAACCAAAGAGGTGTGATCACTGGGTTTTGGTGAACAAACTTTAGTGGACAGTGGACCAAAATATTAGCCAAATTTCAGTCGTTCCCTGAGTTAGTAAAACAACATCTTCATCTCTTCCATATTGACAGTGGATGTTACCGACTGATCACTATCTGATTAGTATTAAAAGTATCCATATCGGTCTAAGCCTAGCCGAGATATAAGAGATTATCAAGTAATGGAGCTGTTTGCAGTGCTTGTGGGAATTCTGTCTGAACAGTAGCCATTGTGTTTTGGCAGATTCCTCTGCTGTGGAAGAATGTGTGTAGCGGCCAGTAATAACCACATAATGCTGTTGTTTCTGAGCAGGTTGCTCTCCTACCCTACAAACTTGATAAATGCCAGTGACACGCGTCGAGGCATCGCCAAGGCTTTTGGCATGTGGAGCGACGTCTCACCTTTCAGCTTCAGAGAGGTGCCAGCTGACCAAGAAGCAGCCATTAAGATCGGCTTCTACCCCATCAACCACACGGACTGTCTGCAGTCCTACTTGCACCATTGTTTCGACGGCATCACAGGAGAATTGGCTCATGCTTTCTTCCCGCCAACTGGCGAGATTCACTTCGACGACCACGAATACTGGATTCTGGGAAACATGCGCTTTAGCTGGAAGAAAGGGGTTTGGCTGACGGATCTTGTCCATGTGGCAACTCACGAAATTGGCCACGTCCTGGGACTCATGCACTCCTTGGACCCGAAAGCCATAATGCACCTGAATGCAACTCTGACGGGGCGCAAGCTGATCACACAGGATGATGTGTGGGGTTTGCACCGTCTCTACGGATGTTTGGACCGCTTATTTATCTGTCCGGCCTGGGCTCGGAAAGGCTATTGCGACAGCAAGCGTAAACTGATGCAGAAGCACTGCCCCTCCAGCTGTGATTTCTGTTACGAATTTCCTTTCCCCACTGTGGCTCCCACCGTGACACCCCCGAGGACCAAGCACAAGCTGGTCGTCGAGGGCAAGAAGCTCACTTTTCGATGTGGGAAGAAAATAGCATCGAAGAAAGGCAAAGTATACTGGTACAAGGACGGCGAGCTGCTGGAGTTCTCTCACCCAAACTACATCTCCCTGAAAGATGACCACATTACCATAGTGGCCAACGCCATCAACGAAGGCACGTACACCTGCATCGTgaagaaaaaagacaaagttCTCACAAACTACTCCTGGAGAGTGCGTGTGCGCTTCTGAAGGCTTCCGCACAATGAACAGGACGCATTTACACACATACGCTCACAAGGACACCTCATTCACCCATGggcacatatttttttttagtcttTCCTTGTATCTTCCGCAAACAACTGTCTATCGTTGATTGTAACTGTGTAAATGCGTTTTTAATAGGTGCAAATAAATGTTACGTGACAAGTAGAA

Function

symbol description
mmp23b Enables metalloendopeptidase activity. Involved in proteolysis and reproduction. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: matrix metalloproteinase-23 isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800306.1 False 1579 mRNA 0.51 8 29741558 29751592
XM_039800307.1 True 2129 mRNA 0.46 7 29741834 29751592
XM_039800308.1 False 2078 mRNA 0.46 7 29741889 29751592

Neighbor

gene id symbol gene type direction distance location
arhgef19 arhgef19 coding upstream 148506 29572007 ~ 29593052 (+)
ddost ddost,LOC102799190 coding upstream 218106 29517679 ~ 29523452 (+)
zbtb17 zbtb17 coding upstream 224368 29502226 ~ 29517190 (+)
hspb7 hspb7 coding upstream 241097 29496591 ~ 29500461 (+)
fam131c fam131c coding upstream 268254 29460638 ~ 29473304 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding downstream 60571 29812163 ~ 29821637 (+)
otud3 otud3 coding downstream 88612 29840204 ~ 29846246 (+)
trim33 trim33 coding downstream 102378 29853970 ~ 29891523 (+)
slc66a1 pqlc2 coding downstream 142413 29894005 ~ 29902494 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding downstream 152267 29903859 ~ 29927978 (+)
G54101 ubiad1 non-coding upstream 2314 29737041 ~ 29739244 (+)
G54094 LOC104942893 non-coding upstream 34491 29703248 ~ 29707067 (+)
G54057 NA non-coding upstream 171940 29568175 ~ 29569618 (+)
G53963 NA non-coding upstream 332445 29408711 ~ 29409113 (+)
G53962 NA non-coding upstream 357367 29383950 ~ 29384191 (+)
G54107 LOC102235830,LOC104955916,LOC108233146 non-coding downstream 7452 29759044 ~ 29760415 (+)
G54108 NA non-coding downstream 9484 29761076 ~ 29765810 (+)
LOC120558370 NA non-coding downstream 240535 29992127 ~ 29994409 (+)
G54221 NA non-coding downstream 342460 30094052 ~ 30103983 (+)
G54229 NA non-coding downstream 378475 30130067 ~ 30131917 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 173785 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 195672 29524023 ~ 29545886 (+)
nadka nadk other upstream 418316 29296604 ~ 29323242 (+)
LOC120558754 NA other upstream 1325811 28407271 ~ 28415747 (+)
G53775 NA other upstream 1395642 28341922 ~ 28345916 (+)
G54103 LOC103366252 other downstream 854 29752446 ~ 29758010 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 18260 29769852 ~ 29782937 (+)
agrn agrn other downstream 463018 30214610 ~ 30486565 (+)
micos10 minos1 other downstream 888168 30639760 ~ 30642621 (+)
G54383 NA other downstream 938060 30689652 ~ 30690404 (+)

Expression


Co-expression Network