nr1h5 (LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965)


Basic Information

Item Value
gene id nr1h5
gene name LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29903859 ~ 29927978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800362.1
GCTGGAATTGACAttacaaaaagtgaaaaaggtTGGACAAAGGGAGAGGACGTCGGGACACTCGGCGCAGCAGGAAGGCTCCCACCATAAACGatagATCCCGTATTACTAGCTGGAGAGAGGATCTTCTGTCCAGATGAGAGAGTGGACTGAGTTGGAGATGAGTTTTTCGGCAGGGGGGTTTCTCTCCGCCTCGGATGGTTACTGCTCCACAGAGCAGCTCCAGTATTACGACATGCTGACTGACCCTCTGGGCTACCCCCTTCAGGACCCTGACCTCCAGCTGCTCCCGTACGGCCAACAACAGTACAGCCCAGCCAACCTGCCCTTTTCCCTCTATGGCTCTCCaccttcctccacctcctcctcctcttcctcttcgcAGCCCTCCCATCCTCAGTACCACTACAGCCCTCATTGCCTGGAGGCCCCCTGTGATCCCAGCCCCGAACCCCACTGCGGGGGCCTGGCTCAGGGGCTCGGAGCGGTGGGACTGCACCTGGGGCGGAGGACACGGGTCGGGTCGGGAGGGAAGAGCAGAGGCCAGGAAgagctgtgtgtggtgtgtggagaTAAAGCGTCAGGGTATCACTACAACGCTCTTACCTGCGAGGGATGCAAAGGTTTCTTTAGGCGTAGTGTGACAAAAAAGGCGGTGTATCAGTGTAAGAGTGGCGGTGGCTGTGAGATGGACATGTACATGAGAAGGAAGTGCCAAGACTGTCGGCTGAGGAAGTGCCGCGCCGTGGGAATGCTGGCTGAGTGCCTTCTCACGGAGGTGCAGTGCCAGTCCAAACGACTGAGGAAAGGAGGTAAAGGCAGAgtacaggaggaagaggagaacacAGAGAGCAGGAGGGTCAGCTCTACCAGCAAGCTACCTGGACAGGCTTTGTCTGCCAGTTTAACCCAAGAACAAAAGTACATTGTGGACAGGATGGTGGAGGCACATCGACTGTACAGAGCACAGGACAGCAGCCACTGCAGGTTGTTTGAGTTTCCCTGTACAGAAGAAGTGGGGGGCTTGTCTGATGTTTTATCACCCCACCTGCAAAGACTGCTACAGTTTGCCAGGACAATGCCAGGTTTTGACCTCCTGGATTTTTCCGACCAGAGTTGTCTCCTGTCTGTGTCTTCGCTGGAGATCATGTTCCTGATCTCAGCTCAGCAGTTCTCCCACAACCCAGCAAGCTGTCCAGCCCTGCAGATTTTCAGAATGACAACACACAACTGGCTGAGAAATGTAGAGTCTAAGGAAAACATCTACAGTAGGATGCTGGTCAACTCAGGTGGCAGTGAGGATCTCCTCGGGCCAGTGCTCAACTTCTTCCACAGCATGGCAACGCTGCGGGTGACAGATGTTGAATACACCCTGCTCACTGCAACAGCTCTTCTCTGCTCAGCTCTGTGTCCCTGTCCTGCAGACCGTGCGTCCCTGCAGGCTGCCGGCTGCGTTGAGAAAATGCAGGAGCTGATCCTTGACCTGCTGTCCAGGGTGTGTGGGGCCCAGGCTGGAGCTGCGCGAGGGGGACCTCAGCGGTTTGGCCGCCTGCTGGGCAGACTGACGGAGCTACGGACCCTCCGTCACAACTACCTCCTCCTGACGAGACAACCGCATGGACACTGATGGAGAGGACACACTGGAAATAGTGAACACCACCACTGTCATCTCTGGCCAGTTTCATGTTTGAAATGAAGGACTCTATGTTCCTGTATGAGCTGAGAAATTGTACAAAAACATCTTGACAATGCAACGTTCACCTGATATTGACTGGACTGTGTTGGATTCTTTGGTCTTACACATAAATCTGCCACCATATCCTCGGTTGACTTCAGTTCATTCAGTCATTATTGAATTTCAGCAGATGATGGAACTGAAATGTTTGTGGACTGCTCTAGTTTGGACTGAAGATATTTTATAGGTCTTTTTTTAACTGTTGTATACAGCTAACATGTACCCTTACAGTACGTTTCACTATGCTGAgtattgttaaaataaaactaaagtgCAAACTG
>XM_039800363.1
GCTGGAATTGACAttacaaaaagtgaaaaaggtTGGACAAAGGGAGAGGACGTCGGGACACTCGGCGCAGCAGGAAGGCTCCCACCATAAACGATCCCGTATTACTAGCTGGAGAGAGGATCTTCTGTCCAGATGAGAGAGTGGACTGAGTTGGAGATGAGTTTTTCGGCAGGGGGGTTTCTCTCCGCCTCGGATGGTTACTGCTCCACAGAGCAGCTCCAGTATTACGACATGCTGACTGACCCTCTGGGCTACCCCCTTCAGGACCCTGACCTCCAGCTGCTCCCGTACGGCCAACAACAGTACAGCCCAGCCAACCTGCCCTTTTCCCTCTATGGCTCTCCaccttcctccacctcctcctcctcttcctcttcgcAGCCCTCCCATCCTCAGTACCACTACAGCCCTCATTGCCTGGAGGCCCCCTGTGATCCCAGCCCCGAACCCCACTGCGGGGGCCTGGCTCAGGGGCTCGGAGCGGTGGGACTGCACCTGGGGCGGAGGACACGGGTCGGGTCGGGAGGGAAGAGCAGAGGCCAGGAAgagctgtgtgtggtgtgtggagaTAAAGCGTCAGGGTATCACTACAACGCTCTTACCTGCGAGGGATGCAAAGGTTTCTTTAGGCGTAGTGTGACAAAAAAGGCGGTGTATCAGTGTAAGAGTGGCGGTGGCTGTGAGATGGACATGTACATGAGAAGGAAGTGCCAAGACTGTCGGCTGAGGAAGTGCCGCGCCGTGGGAATGCTGGCTGAGTGCCTTCTCACGGAGGTGCAGTGCCAGTCCAAACGACTGAGGAAAGGAGGTAAAGGCAGAgtacaggaggaagaggagaacacAGAGAGCAGGAGGGTCAGCTCTACCAGCAAGCTACCTGGACAGGCTTTGTCTGCCAGTTTAACCCAAGAACAAAAGTACATTGTGGACAGGATGGTGGAGGCACATCGACTGTACAGAGCACAGGACAGCAGCCACTGCAGGTTGTTTGAGTTTCCCTGTACAGAAGAAGTGGGGGGCTTGTCTGATGTTTTATCACCCCACCTGCAAAGACTGCTACAGTTTGCCAGGACAATGCCAGGTTTTGACCTCCTGGATTTTTCCGACCAGAGTTGTCTCCTGTCTGTGTCTTCGCTGGAGATCATGTTCCTGATCTCAGCTCAGCAGTTCTCCCACAACCCAGCAAGCTGTCCAGCCCTGCAGATTTTCAGAATGACAACACACAACTGGCTGAGAAATGTAGAGTCTAAGGAAAACATCTACAGTAGGATGCTGGTCAACTCAGGTGGCAGTGAGGATCTCCTCGGGCCAGTGCTCAACTTCTTCCACAGCATGGCAACGCTGCGGGTGACAGATGTTGAATACACCCTGCTCACTGCAACAGCTCTTCTCTGCTCAGCTCTGTGTCCCTGTCCTGCAGACCGTGCGTCCCTGCAGGCTGCCGGCTGCGTTGAGAAAATGCAGGAGCTGATCCTTGACCTGCTGTCCAGGGTGTGTGGGGCCCAGGCTGGAGCTGCGCGAGGGGGACCTCAGCGGTTTGGCCGCCTGCTGGGCAGACTGACGGAGCTACGGACCCTCCGTCACAACTACCTCCTCCTGACGAGACAACCGCATGGACACTGATGGAGAGGACACACTGGAAATAGTGAACACCACCACTGTCATCTCTGGCCAGTTTCATGTTTGAAATGAAGGACTCTATGTTCCTGTATGAGCTGAGAAATTGTACAAAAACATCTTGACAATGCAACGTTCACCTGATATTGACTGGACTGTGTTGGATTCTTTGGTCTTACACATAAATCTGCCACCATATCCTCGGTTGACTTCAGTTCATTCAGTCATTATTGAATTTCAGCAGATGATGGAACTGAAATGTTTGTGGACTGCTCTAGTTTGGACTGAAGATATTTTATAGGTCTTTTTTTAACTGTTGTATACAGCTAACATGTACCCTTACAGTACGTTTCACTATGCTGAgtattgttaaaataaaactaaagtgCAAACTG
>XM_039800364.1
GCTGGAATTGACAttacaaaaagtgaaaaaggtTGGACAAAGGGAGAGGACGTCGGGACACTCGGCGCAGCAGGAAGGCTCCCACCATAAACGatagATCCCGTATTACTAGCTGGAGAGAGGATCTTCTGTCCAGATGAGAGAGTGGACTGAGTTGGAGATGAGTTTTTCGGCAGGGGGGTTTCTCTCCGCCTCGGATGGTTACTGCTCCACAGAGCAGCTCCAGTATTACGACATGCTGACTGACCCTCTGGGCTACCCCCTTCAGGACCCTGACCTCCAGCTGCTCCCGTACGGCCAACAACAGTACAGCCCAGCCAACCTGCCCTTTTCCCTCTATGGCTCTCCaccttcctccacctcctcctcctcttcctcttcgcAGCCCTCCCATCCTCAGTACCACTACAGCCCTCATTGCCTGGAGGCCCCCTGTGATCCCAGCCCCGAACCCCACTGCGGGGGCCTGGCTCAGGGGCTCGGAGCGGTGGGACTGCACCTGGGGCGGAGGACACGGGTCGGGTCGGGAGGGAAGAGCAGAGGCCAGGAAgagctgtgtgtggtgtgtggagaTAAAGCGTCAGGGTATCACTACAACGCTCTTACCTGCGAGGGATGCAAAGGTTTCTTTAGGCGTAGTGTGACAAAAAAGGCGGTGTATCAGTGTAAGAGTGGCGGTGGCTGTGAGATGGACATGTACATGAGAAGGAAGTGCCAAGACTGTCGGCTGAGGAAGTGCCGCGCCGTGGGAATGCTGGCTGAGTGCCTTCTCACGGAGGTGCAGTGCCAGTCCAAACGACTGAGGAAAGGAGGTAAAGGCAGAgtacaggaggaagaggagaacacAGAGAGCAGGAGGGTCAGCTCTACCAGCAAGCTACCTGGACAGGCTTTGTCTGCCAGTTTAACCCAAGAACAAAAGTACATTGTGGACAGGATGGTGGAGGCACATCGACTGTACAGAGCACAGGACAGCAGCCACTGCAGGTTGTTTGAGTTTCCCTGTACAGAAGAAGTGGGGGGCTTGTCTGATGTTTTATCACCCCACCTGCAAAGACTGCTACAGTTTGCCAGGACAATGCCAGGTTTTGACCTCCTGGATTTTTCCGACCAGAGTTGTCTCCTGTCTGTGTCTTCGCTGGAGATCATGTTCCTGATCTCAGCTCAGCAGTTCTCCCACAACCCAGCAAGCTGTCCAGCCCTGCAGATTTTCAGAATGACAACACACAACTGGCTGAGAAATGTAGAGTCTAAGGAAAACATCTACAGTAGGATGCTGGTCAACTCAGGTGGCAGTGAGGATCTCCTCGGGCCAGTGCTCAACTTCTTCCACAGCATGGCAACGCTGCGGGTGACAGATGTTGAATACACCCTGCTCACTGCAACAGCTCTTCTCTGCTCAGACCGTGCGTCCCTGCAGGCTGCCGGCTGCGTTGAGAAAATGCAGGAGCTGATCCTTGACCTGCTGTCCAGGGTGTGTGGGGCCCAGGCTGGAGCTGCGCGAGGGGGACCTCAGCGGTTTGGCCGCCTGCTGGGCAGACTGACGGAGCTACGGACCCTCCGTCACAACTACCTCCTCCTGACGAGACAACCGCATGGACACTGATGGAGAGGACACACTGGAAATAGTGAACACCACCACTGTCATCTCTGGCCAGTTTCATGTTTGAAATGAAGGACTCTATGTTCCTGTATGAGCTGAGAAATTGTACAAAAACATCTTGACAATGCAACGTTCACCTGATATTGACTGGACTGTGTTGGATTCTTTGGTCTTACACATAAATCTGCCACCATATCCTCGGTTGACTTCAGTTCATTCAGTCATTATTGAATTTCAGCAGATGATGGAACTGAAATGTTTGTGGACTGCTCTAGTTTGGACTGAAGATATTTTATAGGTCTTTTTTTAACTGTTGTATACAGCTAACATGTACCCTTACAGTACGTTTCACTATGCTGAgtattgttaaaataaaactaaagtgCAAACTG

Function

NR:

description
PREDICTED: bile acid receptor isoform X4

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800362.1 True 2016 mRNA 0.53 11 29903859 29927978
XM_039800363.1 False 2012 mRNA 0.53 11 29903859 29927978
XM_039800364.1 False 1995 mRNA 0.53 11 29903859 29927978

Neighbor

gene id symbol gene type direction distance location
slc66a1 pqlc2 coding upstream 1365 29894005 ~ 29902494 (+)
trim33 trim33 coding upstream 12336 29853970 ~ 29891523 (+)
otud3 otud3 coding upstream 57613 29840204 ~ 29846246 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding upstream 82222 29812163 ~ 29821637 (+)
mmp23ba mmp23b coding upstream 152267 29741558 ~ 29751592 (+)
angptl7 angptl7 coding downstream 234700 30162678 ~ 30166395 (+)
ptpn11b LOC104956326 coding downstream 563388 30491366 ~ 30539121 (+)
sike1 sike1 coding downstream 705823 30633801 ~ 30638995 (+)
htr6 htr6,LOC102793426 coding downstream 716766 30644744 ~ 30650059 (+)
vwa1 LOC103364336,LOC104966039,LOC104936677 coding downstream 741598 30669576 ~ 30679373 (+)
G54079 mib2,LOC106936770,LOC103150490,LOC106926266 non-coding upstream 132058 29636527 ~ 29771801 (+)
G54108 NA non-coding upstream 138049 29761076 ~ 29765810 (+)
G54107 LOC102235830,LOC104955916,LOC108233146 non-coding upstream 143444 29759044 ~ 29760415 (+)
G54101 ubiad1 non-coding upstream 164615 29737041 ~ 29739244 (+)
G54094 LOC104942893 non-coding upstream 196792 29703248 ~ 29707067 (+)
LOC120558370 NA non-coding downstream 64149 29992127 ~ 29994409 (+)
G54221 NA non-coding downstream 166074 30094052 ~ 30103983 (+)
G54229 NA non-coding downstream 202089 30130067 ~ 30131917 (+)
G54348 ampd1 non-coding downstream 601343 30529321 ~ 30591468 (+)
trnar-ucu_12 NA non-coding downstream 604122 30532100 ~ 30532191 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other upstream 120922 29769852 ~ 29782937 (+)
G54103 LOC103366252 other upstream 145849 29752446 ~ 29758010 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 336086 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 357973 29524023 ~ 29545886 (+)
nadka nadk other upstream 580617 29296604 ~ 29323242 (+)
agrn agrn other downstream 286632 30214610 ~ 30486565 (+)
micos10 minos1 other downstream 711782 30639760 ~ 30642621 (+)
G54383 NA other downstream 761674 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 870215 30798193 ~ 30837415 (+)
znf341 NA other downstream 1214292 31142270 ~ 31159511 (+)

Expression


Co-expression Network