lima1a


Basic Information

Item Value
gene id lima1a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7730815 ~ 7764951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800369.1
AGGCGGCTCTGTCTGTGCTCACACTGGACCCTGCTGATTGGACGAGTGGGGAGAGCTCGTACCTGCCAGGTGGAGGTGAATGCCGCATAATTTTCTGAGTTAAATGGGAGTGGTGGGAGCTCCTCCTACTTCCCTGTCTACTCAAAAGCACCGGTGGCAGCAGCTGAGGAGACAAAAAGAGAAGGAAATGCACAAGTAGCAGACTACTGAACACACATCAGGGAGAAAAACTGCCGTGATAGTCACAGAGTTACGACGCGTGTTCCTGGCAAGCCGACAAGACCAATTGATCGCTCAGACGTGCAGCAAAGATGGCCTCCGCCGCTCCGTTCAGCCGCAGACAGTGGGCGTCCCAGTCACTGAGGGTCACCGCCAAGGAGATGTCCATTGTCTCTGCGCGGGGTAAAAACAACGCCATCGCAGAGCGCTTTTCCAAGTACCAGATGGCAGCAGAGGAGGGAaatgcagagaagaagaaagcggTTGTAGAACCTCTTCCCTCCACACTGCGCAGCGGGAATCTGAGTGTTTTAAAGAAACGCTgggaacagcagcagcagccgtccAGCCACAGAGCCCAACGTCAAGCCTGCAGCCCTGCCGACGCTCCGATCCACATCAGCCAACCCACAGGCCCCAATCCTAGACCCACATCGCAGATTGAGAACCAGCCAGACTCCCTGAAAACCACCACACTCTCACTAGACCAGCGTACTGAGCCGGAGACGCAGGTTCACGCCGAGACCGGCTCCAACCAGCTGCAGTCAGCTCGACCCCAGGATCTGAGCGACATGGAGGAGAAGCCCAGCAGAGATTCAGAGGGGCACGAGGGAGCAGCAGCTGAAGTACCGGACTCTGAGAGGCCAAGTGTTCCCCTCAACAGCCTCAAGATGATGTTTGAGAAGAGAGAGAACCTGACCGACGAGGTATCCAGAGAGCAAACGAGTAGAGGAAGCCACTGTAATACTGCCAACATGGACCAGCTACTTGGAGATGGAAGTCTCGCAGAGTCTACTCCTCTCCGGGACAGGATGGCCCTCTACCAAGCTGCCATCTCCAAACAGGAAGTAACTCCCACCTCAGTCAGTAGCGATCAGCTGGACAGTTTCTGCGGGAAGCAGAAGGAGAACGTTCCTCCGTGCACTCTGGACCTGAGTCCAGAGTCTGAACCAAACGGCAGGAAAGGTTTCACCTCGGAGAGCAACGGCTCTGCTTCTGGCACTCCTACATCCTCCAATCAGAGAGACTCCTCTCAGCCCAAGACTCCTAAAaacttCCGCCTGCCTGTGAGGGAGACCTGTGTGTCGTGTCAAAAGACGGTTTATCCTCTGGAGAGGCTGGTGGCCAATCAGCACGTTTACCACAGCTCCTGCTTCCGCTGCTCACACTGCAACACCAAACTCAGTTTGGTGAACTACGCCTCGCTGCACAACAACGTCTACTGCAAGCCACACTTCTGCCAGCTGTTCAAGGCCAAGGGCAACTACGACGAGGGCTTTGGCCACCGGCCCCACAAACAGCTGTGGGATAGCAAAGGGGAGAGCGGCGAGACCTCACCGCAGTCCAACGCTCCGATCAAGCCAAAGATCCAGAGCCCGGCCCCGGCCTCGGACCTGGACAGCCCCAGCGTGGAGGACTCCCCGCTGGCTAAGGTCAACGTGCTGATGGCCACTATGGAGGCTCTGGGACAGGGCTCGTCGGAGAAGTCTGACAGACCCACCGAGACCCGCAGGCTGAAAATCTCCTGGCCACCACGAACCGAGGTGGAGGACTCGAGCGGCCGCGGTGGCGGCGCCACGACGCCCGCAGACGAGGGGTCCACCAGTAAGCCCGTCCGAGCCAAGTGGCCCCCAGAGGAGGACTCCCTCTCCTCACCCCCCGAACAGGTCAGAGAGACTCCCTGCCTGCGCCGCACCTCCTCCCTGAAGGAGCGCAGCATGCCCTTCACACTGGCAGGACAAGCGCCTGCTCCTGAGGCCAGAAACCAGAGTCTGCGTCCTCCCGTGGACGACGGGCAGCTCAGTCCTGAACCGTCCAGCATGGAGCTGCAGCACTGCGGCCAGTCGACAGACGGCCACACGCCCACCGAGGACAGCTGTGTGGACGTCCACACCAGCtctggagaggaggaggagcaggagggggAGATGAAGACTGAATACTTGCCGGACTATCGTCTCGCCAAAGAGAAAGACGACACTCCGGATGATCaacctgaggaggaggaggaggagaagatggaggaggaggaggaggagaaagatggagaTGTGTTAGAGGAAGAGATGGAGCCTCTGAAACGGGAGGAGACGCCAACTGACATCTCATTTCCGGAACGTGAGGTGGAGGCCAGCCAGTCATCTCAGGATGTGGGCTTCTGGGACAGCGAGGAGGTGGAGGATAAGGAGGaggcgcagcagcagcaggaggatgaggaggtgcTGACGGTGGAGGAAATGATCAAACGAAACCGACACTACgaggaggaacaggaggaagaggatgcaTGAATTGATCGATCAACAACCTAACCATGGACACTTGGAGGACTTCATGCcattccttctttttctttttttttagatgttttcttctcttcttaaAAGAGTTGCTGCAGTGTCTAGTGTGAACTCTACTGAACTCTTTATCTGTGCCTCTTTCAAACACTCTTTGAAACCTTTAAAGCCATTCCTACGATAGTTTTTACAAGGCTATTGTCCCTCTGAcacaaattgtttttaaatgtacaatatttaAAATGACGCCCCATGTAATGAATGTTTTTAGCACTGAGATGTCCAAAGGTATGACATGTAGAGAATTATTTTTCTGTAATTTTCTATTTTCATTGAATGCCTCCTAATCTGGATCGAAACTTCCGTTATAAATACCAATAGCATGATCCTATTACTATACCAAGAAGTGGGATTATTACACCTAGTGTAGCTTCTTAATGGAGTCTTTTTGTAATAGGAAAGCTAAAAGAAGACGTGCCACTCTGTTTTAGAAAAAAGCCTAGGCCAGCACTAGGAACAGTTTAAAATAATGGATTTGGATAGGTTTTGACTTTCTGTGGGAAATACATCCGTCACTTTACTTTTCAGTTGCccttctgtatgtatgtgtttagacttaaaaaaaaaaaaaaaaaaacccttctgttcctttttgttttcaagAGTAATAACTGGATCGGAATACTGTTGTACTGATGGTTTTCAAACCAAGGGACCAAATATCCTACGTAACTACTGCTTAAATAAATTGTTACATGCAAAA
>XM_039800370.1
TGATTTCTGGGTGAGGTTTTGTACTAAATAGGCCTGAACTGGCACGTGTGATTTGATCTTCTCTGACTTTAACTACGTGTGTGAAGAAAAGGGAGTTACGACGCGTGTTCCTGGCAAGCCGACAAGACCAATTGATCGCTCAGACGTGCAGCAAAGATGGCCTCCGCCGCTCCGTTCAGCCGCAGACAGTGGGCGTCCCAGTCACTGAGGGTCACCGCCAAGGAGATGTCCATTGTCTCTGCGCGGGGTAAAAACAACGCCATCGCAGAGCGCTTTTCCAAGTACCAGATGGCAGCAGAGGAGGGAaatgcagagaagaagaaagcggTTGTAGAACCTCTTCCCTCCACACTGCGCAGCGGGAATCTGAGTGTTTTAAAGAAACGCTgggaacagcagcagcagccgtccAGCCACAGAGCCCAACGTCAAGCCTGCAGCCCTGCCGACGCTCCGATCCACATCAGCCAACCCACAGGCCCCAATCCTAGACCCACATCGCAGATTGAGAACCAGCCAGACTCCCTGAAAACCACCACACTCTCACTAGACCAGCGTACTGAGCCGGAGACGCAGGTTCACGCCGAGACCGGCTCCAACCAGCTGCAGTCAGCTCGACCCCAGGATCTGAGCGACATGGAGGAGAAGCCCAGCAGAGATTCAGAGGGGCACGAGGGAGCAGCAGCTGAAGTACCGGACTCTGAGAGGCCAAGTGTTCCCCTCAACAGCCTCAAGATGATGTTTGAGAAGAGAGAGAACCTGACCGACGAGGTATCCAGAGAGCAAACGAGTAGAGGAAGCCACTGTAATACTGCCAACATGGACCAGCTACTTGGAGATGGAAGTCTCGCAGAGTCTACTCCTCTCCGGGACAGGATGGCCCTCTACCAAGCTGCCATCTCCAAACAGGAAGTAACTCCCACCTCAGTCAGTAGCGATCAGCTGGACAGTTTCTGCGGGAAGCAGAAGGAGAACGTTCCTCCGTGCACTCTGGACCTGAGTCCAGAGTCTGAACCAAACGGCAGGAAAGGTTTCACCTCGGAGAGCAACGGCTCTGCTTCTGGCACTCCTACATCCTCCAATCAGAGAGACTCCTCTCAGCCCAAGACTCCTAAAaacttCCGCCTGCCTGTGAGGGAGACCTGTGTGTCGTGTCAAAAGACGGTTTATCCTCTGGAGAGGCTGGTGGCCAATCAGCACGTTTACCACAGCTCCTGCTTCCGCTGCTCACACTGCAACACCAAACTCAGTTTGGTGAACTACGCCTCGCTGCACAACAACGTCTACTGCAAGCCACACTTCTGCCAGCTGTTCAAGGCCAAGGGCAACTACGACGAGGGCTTTGGCCACCGGCCCCACAAACAGCTGTGGGATAGCAAAGGGGAGAGCGGCGAGACCTCACCGCAGTCCAACGCTCCGATCAAGCCAAAGATCCAGAGCCCGGCCCCGGCCTCGGACCTGGACAGCCCCAGCGTGGAGGACTCCCCGCTGGCTAAGGTCAACGTGCTGATGGCCACTATGGAGGCTCTGGGACAGGGCTCGTCGGAGAAGTCTGACAGACCCACCGAGACCCGCAGGCTGAAAATCTCCTGGCCACCACGAACCGAGGTGGAGGACTCGAGCGGCCGCGGTGGCGGCGCCACGACGCCCGCAGACGAGGGGTCCACCAGTAAGCCCGTCCGAGCCAAGTGGCCCCCAGAGGAGGACTCCCTCTCCTCACCCCCCGAACAGGTCAGAGAGACTCCCTGCCTGCGCCGCACCTCCTCCCTGAAGGAGCGCAGCATGCCCTTCACACTGGCAGGACAAGCGCCTGCTCCTGAGGCCAGAAACCAGAGTCTGCGTCCTCCCGTGGACGACGGGCAGCTCAGTCCTGAACCGTCCAGCATGGAGCTGCAGCACTGCGGCCAGTCGACAGACGGCCACACGCCCACCGAGGACAGCTGTGTGGACGTCCACACCAGCtctggagaggaggaggagcaggagggggAGATGAAGACTGAATACTTGCCGGACTATCGTCTCGCCAAAGAGAAAGACGACACTCCGGATGATCaacctgaggaggaggaggaggagaagatggaggaggaggaggaggagaaagatggagaTGTGTTAGAGGAAGAGATGGAGCCTCTGAAACGGGAGGAGACGCCAACTGACATCTCATTTCCGGAACGTGAGGTGGAGGCCAGCCAGTCATCTCAGGATGTGGGCTTCTGGGACAGCGAGGAGGTGGAGGATAAGGAGGaggcgcagcagcagcaggaggatgaggaggtgcTGACGGTGGAGGAAATGATCAAACGAAACCGACACTACgaggaggaacaggaggaagaggatgcaTGAATTGATCGATCAACAACCTAACCATGGACACTTGGAGGACTTCATGCcattccttctttttctttttttttagatgttttcttctcttcttaaAAGAGTTGCTGCAGTGTCTAGTGTGAACTCTACTGAACTCTTTATCTGTGCCTCTTTCAAACACTCTTTGAAACCTTTAAAGCCATTCCTACGATAGTTTTTACAAGGCTATTGTCCCTCTGAcacaaattgtttttaaatgtacaatatttaAAATGACGCCCCATGTAATGAATGTTTTTAGCACTGAGATGTCCAAAGGTATGACATGTAGAGAATTATTTTTCTGTAATTTTCTATTTTCATTGAATGCCTCCTAATCTGGATCGAAACTTCCGTTATAAATACCAATAGCATGATCCTATTACTATACCAAGAAGTGGGATTATTACACCTAGTGTAGCTTCTTAATGGAGTCTTTTTGTAATAGGAAAGCTAAAAGAAGACGTGCCACTCTGTTTTAGAAAAAAGCCTAGGCCAGCACTAGGAACAGTTTAAAATAATGGATTTGGATAGGTTTTGACTTTCTGTGGGAAATACATCCGTCACTTTACTTTTCAGTTGCccttctgtatgtatgtgtttagacttaaaaaaaaaaaaaaaaaaacccttctgttcctttttgttttcaagAGTAATAACTGGATCGGAATACTGTTGTACTGATGGTTTTCAAACCAAGGGACCAAATATCCTACGTAACTACTGCTTAAATAAATTGTTACATGCAAAA

Function

NR:

description
LIM domain and actin-binding protein 1-like isoform X2

GO: NA

KEGG:

id description
K23026 LIMA1, EPLIN; LIM domain and actin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800369.1 True 3279 mRNA 0.53 11 7730815 7764951
XM_039800370.1 False 3124 mRNA 0.52 11 7732807 7764951

Neighbor

gene id symbol gene type direction distance location
LOC120558668 LOC101467015,LOC102195234,LOC101063096,LOC101170270 coding upstream 59801 7652073 ~ 7671014 (+)
LOC120558666 LOC100692487,LOC102794907,LOC102302796,LOC101487578 coding upstream 80170 7633880 ~ 7650645 (+)
LOC120558796 NA coding upstream 451807 7271418 ~ 7279008 (+)
LOC120558794 NA coding upstream 464380 7261702 ~ 7266435 (+)
LOC120558604 NA coding upstream 550618 7172361 ~ 7180197 (+)
LOC120558968 LOC105935211,LOC103363443,LOC101066234,LOC106920718 coding downstream 649 7765600 ~ 7773185 (+)
igfbp6b LOC103366149,LOC101464910,LOC100708122,LOC104966704 coding downstream 77195 7842146 ~ 7848434 (+)
pip4k2ca pip4k2c,LOC103366150,LOC103385206 coding downstream 90815 7855766 ~ 7876360 (+)
gpr182 gpr182,LOC103467901,LOC103130457,LOC106963994 coding downstream 118216 7883167 ~ 7886762 (+)
tspan31 tspan31 coding downstream 180549 7945500 ~ 7955257 (+)
G47786 NA non-coding upstream 28079 7607890 ~ 7702736 (+)
G47798 fam120c non-coding upstream 110726 7617240 ~ 7620089 (+)
G47794 NA non-coding upstream 127261 7603099 ~ 7603554 (+)
G47789 NA non-coding upstream 144858 7584663 ~ 7585957 (+)
G47768 NA non-coding upstream 261744 7468421 ~ 7469071 (+)
G47881 agap2 non-coding downstream 77543 7842494 ~ 7902442 (+)
G47909 NA non-coding downstream 351429 8116380 ~ 8117222 (+)
G48002 NA non-coding downstream 567571 8332522 ~ 8333531 (+)
G48017 NA non-coding downstream 616136 8381087 ~ 8381428 (+)
G48018 NA non-coding downstream 616540 8381491 ~ 8381729 (+)
ccm2l ccm2l,LOC102778549 other upstream 1009883 6697993 ~ 6720932 (+)
G47444 NA other upstream 1530221 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 2955457 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 3865017 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 4216057 3448104 ~ 3514758 (+)
G47903 LOC104965021 other downstream 347490 8112441 ~ 8116228 (+)
pkig pkig other downstream 577799 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 713172 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 889461 8654412 ~ 8662891 (+)
G48077 NA other downstream 915331 8680282 ~ 8687964 (+)

Expression


Co-expression Network