ddx20 (LOC107556298,LOC107556300)


Basic Information

Item Value
gene id ddx20
gene name LOC107556298,LOC107556300
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18935021 ~ 18943339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800431.1
AAGCAGCTGAGTTTAGATCACTGGCGGTGAACAAGTCCAGTCAACATGGCTGCCTTCGTGAGGAAAGCTGCTCACAATATAGAAACACGAAAGCGGACAGATGATGTGATTCTGTCGGAGGGAATCGACTTCAGCTCCCTGCTGCTCTCCCAGGCCGTGCTGGACGGACTGTCCTCCGCAGGCTTCCAAAAACCCTCCCCGATCCAGCTTAAGGCGATCCCGCTGGGCCGCTGCGGACTTGGTGGGTTCATGAAACTGCGTGGGACGCTCCACACGTGTTCTCCCATGTATGTTGATCTTGTGTGCACCCTGCCAGGCCTGAAGCAGTATTACAAGCTGGTGCAGTCCGATCCTTTACCCCACAAGGTTTTCGAGGCGAAGGTGGAGCACTTGCTAGAGCTTTTCAGTAAAATCCCATTCAACCAGGCACTAGTGTTCTCCAACCTACACACAAGGGCTCAGCACCTGGCAGACATCCTGTCCTCCAAAGGCTTACCTGCTGCTTGTATTTCAGGTGGTCTGAGTCAGGACCAGAGACTGGAGGCCATGTCAAAACTGAAGCAGTACCAGTGCAGGGTGCTCATCTCCACTGACCTGACTTCCAGGGGTATAGATGCAGATAAAGTAAATTTGGTGATAAACCTTGATGTGCCACAGGACTGGGAGACCTATATGCACCGTATTGGACGTGCTGGCCGCTTTGGCACTCAGGGGCTGGCAGTGACCTACTGTTGCCATGGTGAGGAGGAGAACAAGATGATGGCCATTGCTCAAAAGTGCAGCCTGAGATTGTCGATGTTGCCATCCACCATAGAGCCTGGGTTGATGGACGAGCAGTGTGACTGGGATGTCTGCACTGAGGCTTCCACTCCAGGCCCCTTACCCCAGCTCTCCTCCaggacagagaagaagaagaagcagcatgCCAAGTCGGTCCCAGATCACACTCTGGAGCACAGCAGTCAAAGGAAGCCAGAGAAGACCCATCCAGCGCCCAGGCTGGGAGCACACGATGAATGCAATCTGAGAAGAGCTTCTCCTGCAAAGGACACTCTCCCACATGGTCCTCCACTAGCGGTGCCGACTCGAAAAGAGCAGCAAGACGCTCTGCCCAAGATCTCTCCTCTCAGCTCGTTCAAGAATTATAGGTCAAGGTTTTTGGCCTTTGAGGAGGCTGAGCGGGACTACCACAGCTTCATTACCACAGGGTTGGGGAGATTGGTGGAAGTGTTTAGGGAGTTCagaggtggagaggacggtgatcCGAAGGGGCATAGGGAGTCTTTCACACTTAATGACGACGGAGGTCaaagtttaaaacaaaacagaaaacagtgGAAATCTAACATTTCACCTCCAAGGTCAGTTTCTGGTTCTTCAAACTCGCAGTCTGATGAGGACGATGAGACAAATCAGACCAGAGGACGTAAATACAGAGCAATCACTGAGCCTCAGACAGAAGCTAGAGAAACACCCTCTCCGTCCAAACCAAAAGCAGAGACCACTAGATCCAATGTTTGTACTTCTTCTGCACCCAAAATGTATCGCCAGAGAACCTGTGCGTCAAGTGCGAGAGTTTCGTCTCAGCCTGAGATCTACGATTCCATACCAATCGTTAAATCAAGCCGACATCCCAGTCAGACGGCTCCAGCACATACTGACAGAAATGAATCCAGAAAGATTAAACAAAAGACTGTGGATCAGAGCAAAAAGATTTCAGAGAAGATGAACAGAGAGCAAAAGAGGGAAAGGGATGAAGGAGAacacgatgatgatgatgatgatgatcatgaTCATGATGAAGAGGAGTGGAGTGCTGAAACTTACTGGAGAGCCAGCTACAGAGCCTGGAATGATTACTATGCCTCTATGTCTCCTTTTCAAGAGCAAAATTACCAAAGCTACTACGGTGTAGCCCACAACTGGATGGCGGCTTATCGTATGAATGCCGTCTACATGGAAGAACTCCTGAAACACTGACATGTCTATACTGTTAATCAGGACGTCCAATCGTGCTGTTGTCTGAATGTCCCCTGCAAAAAATTTAGTACAAAAGTTTGCACTTCTTGTCAAGCATATTGCTCTTCCATTTTTGAGTATGTATTTTTCAATGAATTCATACCATAACCTGTATGCCCCTATTATCTTTCTAATAAATTACAAGTATGGAGCATGTA

Function

NR:

description
probable ATP-dependent RNA helicase DDX20 isoform X1

GO: NA

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800431.1 True 2177 mRNA 0.49 7 18935021 18943339

Neighbor

gene id symbol gene type direction distance location
LOC120558625 LOC101472665,LOC100697880,LOC103370865,LOC102215929,LOC104931656,LOC108235233,LOC103467457,LOC101161555 coding upstream 8538 18886781 ~ 18926483 (+)
LOC120558626 LOC108235173,LOC104963598,LOC102083184 coding upstream 49432 18883396 ~ 18885589 (+)
si:ch211-117c9.2 LOC103370868 coding upstream 79684 18842185 ~ 18855337 (+)
LOC120559184 NA coding upstream 159499 18758936 ~ 18775522 (+)
snai1b LOC104927488,LOC104965648,LOC103366033 coding upstream 194699 18737932 ~ 18740322 (+)
LOC120559196 LOC104963628 coding downstream 67 18943406 ~ 18946367 (+)
LOC120558362 LOC104955725,LOC103367226 coding downstream 254468 19197807 ~ 19201491 (+)
LOC120559315 LOC103367228,LOC104955723 coding downstream 261880 19205219 ~ 19220935 (+)
apeh NA coding downstream 281921 19225260 ~ 19235386 (+)
tlr9 NA coding downstream 292210 19235549 ~ 19240609 (+)
G51028 NA non-coding upstream 78495 18855367 ~ 18856526 (+)
LOC120559607 NA non-coding upstream 97590 18835280 ~ 18837431 (+)
G51017 NA non-coding upstream 176624 18758044 ~ 18758397 (+)
G50994 ncoa6,LOC105926085 non-coding upstream 246728 18686786 ~ 18688293 (+)
G50964 plcg1 non-coding upstream 294841 18636601 ~ 18640180 (+)
G51155 NA non-coding downstream 496348 19439687 ~ 19441326 (+)
G51165 LOC103362816 non-coding downstream 627854 19571193 ~ 19608956 (+)
G51167 LOC101075728,LOC104965662 non-coding downstream 644896 19588235 ~ 19590976 (+)
G51168 LOC102792445,LOC100695140,LOC103362820,LOC104933206,LOC101467308 non-coding downstream 648129 19591468 ~ 19593624 (+)
G51174 bgn non-coding downstream 673776 19617115 ~ 19618210 (+)
G50983 LOC103366028 other upstream 248719 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 634688 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1148623 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 1737848 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 1940320 16977897 ~ 16994701 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 513138 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 824287 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 1053138 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 1120653 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 1502632 20445971 ~ 20532569 (+)

Expression


Co-expression Network