LOC120559093 (cacnb3,LOC102792394,LOC106525262,LOC103467623,LOC107090276,LOC100704754,LOC102209744)


Basic Information

Item Value
gene id LOC120559093
gene name cacnb3,LOC102792394,LOC106525262,LOC103467623,LOC107090276,LOC100704754,LOC102209744
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14781236 ~ 14805118 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800516.1
GCGATGACGCTCCAGTCTAATGGTTTATTTTAGCTCCGGAATTTTTCCTGCTCCATGTACATTTTTACCCCCGATTTAGATTATAACACACcttgtggttgttgtttttttttaccctagCTAGCTTTTTTATATCAGCTGGGCTCGGATACTAATCGCTTTTTCCCCCTCCTCCATATTTTCCGCTCATGCCGCTTCCCCCGCTGTCTTTACTGCATTTTAGATGTATTTTGTGTCCCTTGTTTCCTCCAGTAACCCATGTCTGTGTGCATCTCGCCTCCCTGCGCTCTCAATAGATGGTGCAACTCAAAATGTCCAAATCGCCCGTAGACCCACTGTCTGCTGTGGAAACAGGCTCTCAATCGCACTATTTTCAgCTGCCCAGGAAGTTGCCTAAACGCAAGAGCCGCTTCAAACGCTCAGATGGAAGCACGTCTTCTGACACAACATCCAGCTTCGTCAAACGGCAGGGGTCGGCTGATTCGTACACCAGTAGACCGTCGGATTCAGACCTGTCAGCAGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAGCGCCAGGCACAACTGCAGCTCGACAGAGCTAAGTCCAAACCTGTAGCGTTTGCAGTAAAGACGAATGTGAGTTACTGCGGAGCTCTGGATGAGGACTGTCCTGTCCAAGGAGCTGCAGTCAATTTTGATGCCAAAGACTTCCTGCACATCAAAGAAAAGTATAATAATGACTGGTGGATCGGCCGGCTAGTAAAAGAGGGAGCAGACATCACCTTCATTCCCAGCCCTCTACGACTGGAGGCGATGAGACTCAAGCAGGAGCAGAAACAAAGgaaaacAGGGGGTAACTCCTCCAGTCTAGGGGACATGGTGACTGGGAGTTGGAGGACCACACCGCCATCTGCAGGTGAATCCAAACAGAAGCAAAAACAGGAACACGTTCCACCCTACGACGTGGTGCCCTCTATGAGGCCGGTGGTCCTCGTGGGACCATCGCTGAAGGGCTATGAGGTGACGGATATGATGCAGAAAGCTCTTTTTGACTTCCTGAAACACAGATTTGAAGGAAGAATCTCAATCACACGTGTAACTGCTGACCTCTCTTTAGCCAAGAGATCTGTCCTCAACAAAAGACCCATAATGGAGAGATCCAACACTCGCTCCAGCCTAGCGGAGGTTCAGAGTGAGATCGAGAGGATATTTGAACTCGCCAAAACCCTGCAGCTGGTGATTCTGGACGCGGACACCATCAACCATCCCGCACAGCTAGCCAAAACCTCCCTCGCACCCATCATAGTCTATGTGAAAGTTTCCTCACCAAAGGTGCTCCAGAGACTGGTCAAATCCAGGGGAAAGTCTCAGAGCAAGCACCTGAATGTGCAGATGATGGCTGCAGACAAACTCTCTCAGTGCCCCCCGGATATGTTTGATGTCATTTTGGATGAGAACCAGCTGGAAGATGCATGTGAGCATTTGGCTGAATACCTGGAGATCTACTGGCGTGCCACTCACCTCCCAGGCAACACCCCTCTTAACCCCTTATTGGAGCAGAGTCTAATGACCCCGCCTTCTGCCATCTCAAGTCTACAGAACAAGAACCAGCCACAGCCTTGTGAGGCCGTGGGCTTggagggtgaggaggaggaggcgggtGAGGAGGCCCACTCCCCCCTGGAGCAGGACAGCCTTATGCCGTCTGACGAGGCCAGCGACTCCCTGTCTCGTGGCCGGAGGGGGAGCCCGTGCCACCGGGGGGGTgcggaggatgaagaggaggaggaagaagaagaagaggaggaggaagaggaggaggatgagttTGCCTCCCCCTGCCATGCTCGCACATACAGGGACATGTACCCCCCTCACCGTGGGCACACTGGCAGCGCCCACAGTGCCAATGGGCACGAGTCACAGGACAGGCTGCTCCAACGTGAAGCTCAGCAAGGTCACAACCAGAGGAACAACCGCCAGCGCAGCCGCCCCTGGCCCCGAGACACCTACTGAGGAACGAGGCCCCCCCACCCCCGGCCTCCAGATCAGCACAgagaaccccccacccccccgagCCCTCCAACTGTCGTACGTTCCCAAACAAACAATTTAGAGATGAAAAAACTTGCACCCAAATCAGCTCCAAATCAGAAACAGATGCCCCGTTATTAAGTAGACAACTTtaggtctattttttttttaagaatttagAGTCACTCTCTTCCAGACTCCCACTTATAATTTATCTTTAGGGGATGCACTGACCTCTCCAGGGTTATATAATTCAGATTAAAGTCAACAGGGCTACTCACCTCTGCAATGGAAAGGTTTCAGGCTACCAGCTGTAGGCAAACTCAAACTTTAGCTGCTTTGCCTAAGGTTTCTCTATTGTAGGATGTCTCATATACTGGCCTTAAAATTCCTTAAAGACTTTTAACTATCTTTACTATTGCATGTTTGAGTATAATTCTTTTAAAACTATTTGCACATTAACGTCAGAACAGGAACAGAATGATCTTTACGGATAAACTAATGTAGGAATGTCTACTGTTGAATCCATTTATGGGAAATAGTAATGCATTTGATCACAATGTATATACTGAATGGGCACCTGGTTTTGTTTCATTGCTACTAtatttgtttgattttgttaATATGGACTTGTTTGTTGTTTCAGAAAAAATGTTGCCACCCATGTGTTCACTCATTATACTCTGAAGACGGTGAatggacactcacacacacacacacacacacacacacacacacacacatcagactgAGAGTCTCTGAACGGTCACAGGCTGCAGTACAGCGTCAGCGTCCCCTACAGTGCAGTGTGTTCTGGGCATCACTCGCCTTTGCTGTTGCACAATCACTCTAAACACCTcgaagaaatagaaaaaaaacaatctcaAAATGGGCACAGAGAATGTAAAACACAACGTAGAAAGGGGAATGTTATCTTTTAAAGGGTGAATTATTTGCCAAACTTTGCTTGTTTACATTGAATCCTTCACATATGATTAAGCACATATGCTGCacatgctgcagctcctcttcaaATCTTCAGAGAATGTAAGCTTGCATGCCTTTTTGCACCTCCAACACCACCCGGTGTCTCCAAACCCAACCGATCGCCCTGTAATTCGATTGTAGCACGTTATTGATTGTAGCATCCACAGTTTCTACACTTCTCTCACTCCCCTTGTGTGTCTTTTTGCCAAACATTGCGTCACGTACTGCAGTTTGATTCGATTTCTATCAAAGCAGATCCTCAGGTGTAAGTCCTATACACACTCATCGCGCTCAACTCCACGTAACGAATGTGTCGTGCTCCTGAAGGACTCGTAGCACCCGTGACACGATGTCATTCTGTTTCTGCACCCTCATTTAGTCCACGAGCCGATGAGGAGTTGGACGTGATGCAGACGAGCAGCGACCCGCTTCGTGAAATGGGGTCGATACTGTTAACAGCCGGCTTTAGGAATTACTGGTTTACTGCTTCCATGTCTCACAGGTATCTCTAGCTAGTGTTCTGTATATTTtgaagacaacaacaaaaaaaattagcatgattgaaaaaaaaaaaaaaaaaatctatgcaAGTGTTGCATGAAATCTGATTGTTTCTTTTTACAATTAAGTATTTCAGTAATGCATTGATTCTGATTCTCCTCGTTGTCTTGTAGTGATAGTCTTGTCTTTGGGGCTACTCACTCCTCACACACTAACATCACtattactgaaaaaaaaaaaagaagaaaaaaaaatcagaatgcATCACTTTATTTATCCACAAACATTAATATtggggaatttttttttctatccacAATATTGGGTGGACACTGGTTGACGCACTTTTAAAAGTCACTCGCTTAAAAATTGTCCCGGTCCAAGATCAGGcctacaattttattttttttatttgtgataAAAATGAATGAGTGAATTATTAAAGCCCTGCATGTTTTAGTTCACCAATTAGCTATTTTCATTATATTTTGGCAGAGTATGTTTTTCAAAGCGGACCAATTTAGCAACTGATGAAGCAGTTGAGGTTTTTCAATTTATGAAGCACAATTTTTACAATTTACTTTCCTGTCTTATTCTGTATGCAATACTAAGCCTAAACATTGAAAAACTTTAAACGCCTTAGACCATCTGGACTTCCTCTTTTTGTgtgagtagaaaaaaaaattgcactACTTTTCTTTGGGATGGTTGCTTTGTAATGCAATAACTGCACTAAATATAACCGTGTATCCACCAGACTACCACAGCGTGCTAGCGTGATCCAACACGCCTCTTCCCTCTATTTATCAAAAGAGACAGCAAATGtgtaaaaagtgagacattTCCTGCCTGATGCTGTATAGAATGCTTTCTATTTGAAAATATTCACAATGCTAAGTAAAATATGACTTCAAATAAACATGACATTTTATGTA
>XM_039800517.1
GCGATGACGCTCCAGTCTAATGGTTTATTTTAGCTCCGGAATTTTTCCTGCTCCATGTACATTTTTACCCCCGATTTAGATTATAACACACcttgtggttgttgtttttttttaccctagCTAGCTTTTTTATATCAGCTGGGCTCGGATACTAATCGCTTTTTCCCCCTCCTCCATATTTTCCGCTCATGCCGCTTCCCCCGCTGTCTTTACTGCATTTTAGATGTATTTTGTGTCCCTTGTTTCCTCCAGTAACCCATGTCTGTGTGCATCTCGCCTCCCTGCGCTCTCAATAGATGGTGCAACTCAAAATGTCCAAATCGCCCGTAGACCCACTGTCTGCTGTGGAAACAGGCTCTCAATCGCACTATTTTCAgCTGCCCAGGAAGTTGCCTAAACGCAAGAGCCGCTTCAAACGCTCAGATGGAAGCACGTCTTCTGACACAACATCCAGCTTCGTCAAACGGCAGGGGTCGGCTGATTCGTACACCAGTAGACCGTCGGATTCAGACCTGTCAGCAGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAGCGCCAGGCACAACTGCAGCTCGACAGAGCTAAGTCCAAACCTGTAGCGTTTGCAGTAAAGACGAATGTGAGTTACTGCGGAGCTCTGGATGAGGACTGTCCTGTCCAAGGAGCTGCAGTCAATTTTGATGCCAAAGACTTCCTGCACATCAAAGAAAAGTATAATAATGACTGGTGGATCGGCCGGCTAGTAAAAGAGGGAGCAGACATCACCTTCATTCCCAGCCCTCTACGACTGGAGGCGATGAGACTCAAGCAGGAGCAGAAACAAAGgaaaacAGGGGGTAACTCCTCCAGTCTAGGGGACATGGTGACTGGGAGTTGGAGGACCACACCGCCATCTGCAGGTGAATCCAAACAGAAGCAAAAACAGGAACACGTTCCACCCTACGACGTGGTGCCCTCTATGAGGCCGGTGGTCCTCGTGGGACCATCGCTGAAGGGCTATGAGGTGACGGATATGATGCAGAAAGCTCTTTTTGACTTCCTGAAACACAGATTTGAAGGAAGAATCTCAATCACACGTGTAACTGCTGACCTCTCTTTAGCCAAGAGATCTGTCCTCAACAAAAGACCCATAATGGAGAGATCCAACACTCGCTCCAGCCTAGCGGAGGTTCAGAGTGAGATCGAGAGGATATTTGAACTCGCCAAAACCCTGCAGCTGGTGATTCTGGACGCGGACACCATCAACCATCCCGCACAGCTAGCCAAAACCTCCCTCGCACCCATCATAGTCTATGTGAAAGTTTCCTCACCAAAGGTGCTCCAGAGACTGGTCAAATCCAGGGGAAAGTCTCAGAGCAAGCACCTGAATGTGCAGATGATGGCTGCAGACAAACTCTCTCAGTGCCCCCCGGATATGTTTGATGTCATTTTGGATGAGAACCAGCTGGAAGATGCATGTGAGCATTTGGCTGAATACCTGGAGATCTACTGGCGTGCCACTCACCTCCCAGGCAACACCCCTCTTAACCCCTTATTGGAGCAGAGTCTAATGACCCCGCCTTCTGCCATCTCAAGTCTACAGTTTTCTGAAACACAGGAATTAATTGAGTGATCGCTTACAAAATGGGAACAAGAACCAGCCACAGCCTTGTGAGGCCGTGGGCTTggagggtgaggaggaggaggcgggtGAGGAGGCCCACTCCCCCCTGGAGCAGGACAGCCTTATGCCGTCTGACGAGGCCAGCGACTCCCT

Function

symbol description
cacnb3 Contributes to voltage-gated calcium channel activity. Involved in calcium ion transport. Located in membrane. Part of voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-3

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04864 CACNB3; voltage-dependent calcium channel beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800516.1 True 4444 mRNA 0.45 14 14781236 14805118
XM_039800517.1 False 1760 mRNA 0.51 15 14781236 14802388

Neighbor

gene id symbol gene type direction distance location
LOC120558822 NA coding upstream 75549 14703693 ~ 14705687 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding upstream 97226 14676272 ~ 14684010 (+)
LOC120559203 LOC102794447,LOC101484947 coding upstream 109234 14620148 ~ 14672002 (+)
LOC120559201 gls2,LOC104942574 coding upstream 164794 14600277 ~ 14616442 (+)
aaas aaas coding upstream 219842 14552233 ~ 14561394 (+)
prim1 prim1 coding downstream 34240 14839358 ~ 14844312 (+)
naca naca,LOC107737655,LOC106571941 coding downstream 40219 14845337 ~ 14853817 (+)
LOC120559927 NA coding downstream 47278 14852396 ~ 14852469 (+)
LOC120559926 NA coding downstream 48436 14853554 ~ 14853627 (+)
LOC120558671 ptges3,LOC102790477 coding downstream 57394 14862512 ~ 14867023 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding upstream 190460 14585449 ~ 14590776 (+)
G49775 LOC107731244 non-coding upstream 211639 14568325 ~ 14569597 (+)
G49764 NA non-coding upstream 229677 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 234141 14546864 ~ 14547095 (+)
G49761 NA non-coding upstream 234514 14545395 ~ 14546722 (+)
G49883 NA non-coding downstream 97798 14902916 ~ 14970803 (+)
LOC120559279 NA non-coding downstream 402624 15207742 ~ 15241127 (+)
G50002 NA non-coding downstream 470995 15276113 ~ 15276360 (+)
G50003 NA non-coding downstream 472328 15277446 ~ 15277646 (+)
G50014 NA non-coding downstream 617201 15422319 ~ 15422608 (+)
G49776 NA other upstream 203664 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 213780 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 553348 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 660214 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 1056246 13658732 ~ 13724990 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 967099 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 971099 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1080872 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1499194 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 1517703 16322821 ~ 16379645 (+)

Expression


Co-expression Network