LOC120559103 (rbsn)


Basic Information

Item Value
gene id LOC120559103
gene name rbsn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16618463 ~ 16625418 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800555.1
ATTTGTCCCTCTTCTCTTCCCTTACCAACTGAATGCTAATCACACGACCAGGCAgggctgttgctgctgcagctggTGTTGTCGAGCTGTCAACCACACAGTTATTATTGGATTGATTTTGTCCCAGGACATTCTCTGGCGTGATGGAGCTATTATGGGTTGGGTTGCACACCCCATAACATGTGGACCGAAGCAAAGTCTCCCACCTTGCACCCCTTCTCCCAAAACATAGCTCACAGCTGTCATGGCCTCCAGTTATCCGCCCCCCTTTGAGGGAACAGGTGAAGTGAAGGAGGGCTTTCTTTGCCCGCTGTGCCTGAAGGACCTTCAGTCCTTCTACCAACTCCAAGACCACTATGAGGAAGAACACTCTGGGGATGACCGCCATGTTCGGGGACAGCTTAAAAGTTTGGTCCAGAAGGCAAAGAAAGCAAAAGACAAGCTGTTGAAAAGGGATGGAGATGACAGACCGGATACAGGCAGTTATGAGTCCTTCTACTACGGTGGAGTGGACCCCTACATGTGGGAGCCTCAGGAACTGGGAGCAACCAGAAGTCACCTGGACTTCTTTAAAAAACACCGGGCAGCCAGGATAGATCACTATGTCATTGAGGTCAACAAGCTCATCATTAGACTGGAAAAATTGACATCGTTTGACAGGATCAACTCAGATGCCGCCAAAATCAGAGCCATTGAGAAGTCAGTGGTGTCATGGGTGAATGACTCGGATGTCCCGCTCTGTCCTGACTGTGGAAACAAGTTCAACATCCGGAACAGGCGACACCACTGTCGTCTCTGTGGGTCCATCATGTGTAGGAAGTGTATGGAGTTTATCCCCTTACCTTTGGCTCAAAAGCTGATTATTGGGACACGAGAGGCCCTGTGTGTACCTGGGAGCCCCATTCAGTCCCAGTCTCCCCCAACAGGAGGTGGCAGCAGTGGGATGGGCTCCAGGAGAGGCAGCATCAGCAGCCTGAGCAGCGTTACCTCCATGCTGGAGGAAAAGGATGACGAGAAGATCCGCTGCTGCCACCACTGTATGGACACGCTGCTGAAGATACAGCAGAAGTTGGAAGAGAAGGACCACATGCCGGATGTAGTGAAACTTTACGAGAGGCTGAGGATGTGCATGGAGAAGGTGGATGAAAAGGCTCCAGAATACATCAGAATGGCGGAGTCGCTCAATGCCGGAGAAACCACATACAATCTTGACACTGCTGGCGGACTGAGACTGGAAGTGCAGAAATACTACGAACTAATTGATGCCCTGAGTAAGAAAATTTTAACACTAAGAGCAAAAGATGATCCACCACCGCATCCAAAAGCCCTCCAGCTGCAGAGGATGATCCGCTATACAGCCACACTATTTGTCCAGGAGAAACTGTTAGGTCTCATGTCTTTGCCCACTAAGGATAAATATGAAGAGCttaaagaaaagaggaaacagGAACAAGAGAAGAGACTGCAACAAGAGAGACTGGCAACCCAGGAGACCCTGAAGAGAAGGCAGGAGTCTGAGAAAAACCGTCAACCTCCCAATACTAATGGAGAGCTGCCGCGGGCCCCCAGAGCTCCACGCATGACCAAAGCTGGCGGCTGGTTGCCCTCCGCAGACTCCGTCCATGCATGCAGCGAGCTGGAGGACCCCCTGCTGCAGCAGATTGAGAACATACAGTCATTCCTCCGTCAGGCACGGGAGGCCCAGAGGACAGACGAGGTGGCCATGTTGGAGGAGAACTTGCGTCAGCTGCAGGATGAATACGACCAGCAGCAGACCAGCCTGGCCATCGTGCTCTCCCAGAAgctggctgaggaggagagcTTGCAGCAGGGGGAGCTAGATCGTCTGCAAGCCTGggaaagggaggagagggagcaTTGGGGCCCCACTGTGGCCTCCTCCCAGCCTTCCTTCACTTGGGAGAGGTCTCTGGATATCAGTCCGGCAGGGGTCTTCCAAGAAGAGGAAGATACTGAAGCAGAGGACCTGACTCCGAAAGCTGAGAGGAGTCCGTCCTCTGTAAGAGCGTTCCCTGCTCTTACAAGCCAGGAGGAGTCACCTCCCAGGCTGAGGAGCTTAGGGGGGCATGTAACCCCCCCTGGTGGTGAAGGACCGAACACTGCCTCCCTTAACCCTTTCGATGAGGAGGACTCTACTCCCATTGAGGAGGATCCATCCAATCCCTTCTTCGAGGACATAAAGAGGGAACACAAAGAGGTAAGCAATGGGAAGAAAGAATACAACCCATTTGATGAAGAGGTCCAGGCGGACAAACAGGCGGAGACCGTACCTAGCAATCCTTTTGAGGAGGGCGACGACACCGACACAGGTAACCCTTTCCTGGAAGCCTCTGGGAATTCTCCAGGGGTCTCGACCAACCCCTTTGAcagggatgatgatgatgatgatgaagtttTGCCCGACGTGGATATGATAGAGGAGGaactgctgctgcagcagatTGACAACATTAGGGCCTACATTTTTGATGCCAAGCTCAGTGGCCGTCTCGACGAGGTGGAGCTCTTGTCCGAGAACCTGAGAGAGCTACAGCACACCCTACAAgaacagaagaaaaagaagcactGATACCTTTCCCTCAAAATCTCCGATTACCTGCTACTTCCCAAGTCCTGCAAGGCTAGCTCACTTTACAATGACTAATGAGCCCACTGGTTTTAGTTTGGGTGAGGTCTGCTGCATCACAAAAAGATTAGGTTAGTCCCAAAATTAAATATGCACTTGAGCTAAATAGTCTGGAGTGACTCCCTTAATTTCCAAACATCTTTCTTAACCACTTATCCTGTACAGGGTCGCAGAGGGCTGGAgcctttcccagcatgcacagTCTGAAAGCACTGCAAGTAAACATCCATCTGTACAGCACGTTGCTGTTATTAACCCTGTTGTATCAGGGAAAACACGAACAATTGAGGACAGAATAATGCcatttaaacaatgtttttttttttgttgtcagaTATTTGTTTGATCGAGTGTGGCTGTAGTAGTCAGGATGGATGATTTGGAGCTCTGGCAGAAGCTATGAACAAAGTCAAGATGGAATTGTGGCCAAGGGTGAACAAATGAAAACCAAGCAATTGATGCACGTTTCCAAATGTATCGTTTAACAAAAGTTGCCCTTTAATTCCATTGAGATTAGTGCCCTCTCGTTGTACCAACAACTTTAGTTTGTGGTAATTGAACTTCCTGCTGTTCATTGAACCAATACCAAAGAACCCAGCCATGCATTACTGTTCTACCTGGACCACAAACATTCAGACAAAATAATTATCTGATAATTTCATTAGAAACAAATGAAATGAGACTTctatgaccatatttggacagCCTAGCGTTTGAAGGAAACTGATCATTAGAATAGTTGTTATATATTGAAATCTAATCACAGGCTAACATTTCTAATTCAGTCCCGCTTGTCGTTGCAGAGCCTGTGATCACTTTGTGACCTAGATTTGTAAGAAATTGAAACGCACATTGCACAGAATCAAGCCATTGTTGTTGCCCCTGTTAAGTGTCACTCATACTGACTATGACGACATTATCACGGGGACAAGCTTTTAATCCTCGATCATACTATGAACAACCACATGTACATCTGCAAATGCAATGTGTATGACAAGAGCTGAATAAGTATTTGTTCTAACAGCTTCATTTCTTTTTCAGTGAAAGTTGCTTTTTCTGTAACCCTGAATTCAAATGAATGTTAACCTATCTCTGTTAGGTGACACTTTCTGTCTGTATGGTCTTACTCAAGCAGATTCAGATCAGTAAtcttattttgtgtatcttgtCCGTCATGTTGGCCTTGGCATGGTTGCATTTTAGaccttttatttttgtcttttaaaagcATAGTCAATGCCACGTTGAACAAAGTATTTTCCACGTCCTAGTGTGCGGCCCCTAAAGGTTGTGATCTTATTAACAGTGGCACTACTGATCCAACTGGGCACCTTGGTTGCATGAttcatgtgtctgtgtttctttaAAGTGCTGTTGGCCTTTCGATCGAGCtagtgtatacacacacacacacacacacacacacacacacacacaca

Function

symbol description
rbsn Predicted to enable metal ion binding activity.

NR:

description
PREDICTED: rabenosyn-5

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12481 RBSN, ZFYVE20; rabenosyn-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800555.1 True 4086 mRNA 0.48 12 16618463 16625418

Neighbor

gene id symbol gene type direction distance location
trh trh coding upstream 4675 16611217 ~ 16613788 (+)
LOC120558717 rho coding upstream 158472 16451768 ~ 16459991 (+)
ift122 ift122,LOC102796889 coding upstream 167833 16429579 ~ 16450630 (+)
LOC120558716 creld1,LOC102797660,LOC103361984,LOC100691430 coding upstream 194282 16418835 ~ 16424181 (+)
wu:fl23c11 NA coding upstream 200051 16409281 ~ 16418412 (+)
b3galt4 b3galt4,LOC104957801,LOC102791999 coding downstream 20765 16646183 ~ 16649147 (+)
LOC120559510 LOC102311931,LOC106676355,LOC102214845 coding downstream 35049 16660467 ~ 16666649 (+)
LOC120559511 LOC102311931,LOC106676355,LOC102214845,LOC102799804 coding downstream 45410 16670828 ~ 16679344 (+)
qars1 qars,LOC102790389 coding downstream 84560 16709978 ~ 16718188 (+)
LOC120559487 qrich1,LOC103362963 coding downstream 93754 16719172 ~ 16726239 (+)
G50320 NA non-coding upstream 37470 16580059 ~ 16580993 (+)
G50318 NA non-coding upstream 49081 16567001 ~ 16569382 (+)
LOC120558722 NA non-coding upstream 72628 16544269 ~ 16545835 (+)
G50280 NA non-coding upstream 192643 16425618 ~ 16425820 (+)
G50218 NA non-coding upstream 332704 16285557 ~ 16285759 (+)
LOC120559512 NA non-coding downstream 55163 16680581 ~ 16683534 (+)
G50410 LOC103368435 non-coding downstream 201462 16826880 ~ 16829880 (+)
G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding downstream 473204 17098622 ~ 17104964 (+)
G50505 LOC103354436 non-coding downstream 509270 17134688 ~ 17135490 (+)
G50509 NA non-coding downstream 525764 17151182 ~ 17151913 (+)
LOC120559923 NA other upstream 210002 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 222255 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 238818 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 307446 16304312 ~ 16311017 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 649132 15885990 ~ 15969331 (+)
eif2d eif2d other downstream 352479 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 560493 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 1115953 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1630474 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 2056725 18682143 ~ 18686302 (+)

Expression


Co-expression Network