LOC120559120


Basic Information

Item Value
gene id LOC120559120
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16297931 ~ 16304967 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800588.1
GCAGCGGTGCGACATCCTGCCCACAAAGAGCGGGTTCATTGCTGCTATAGTTACTCGTCACTGGCCTGCTCACAAAGCGCAGCTCGGATATCCAACTTGAGCTGACCTGATGTAATCCACAAAGTCATTTCTTTCTTTGGTCGACAAGGTCTCGACCGATCACTTCATTCTCTCTTCGTCCACTCGAGCGCTCATCCGCTTGCGCGACAGCAGCCACAGCGCGCTGTCCAGACCGTGGAATTAGTATACGTTAATGTTGCGGTGAGAAAGCATTGTGGGAGGACTCTGTGGATGTCAAGCTGTTCACTGGAAGGTAGAAAGGCGAATAAAATCGCGCGGAGACGCTCACGCACAATTCCAGCTATACGGAATCCCGACTTGTTTACCCTGTACCGGGCACAGAGCAGCACCGTTGCGCAGTCTTTACGCACAACCAAAGCGCGGACTTGGGGGGGCGTCTGTCTGTCCCAACAATGTCAGCAGCAACAGCTTCAATAGCAGATGTGCCCAGGACTGATTTTACAAACAAAGATGACAGTCGTGACCGGAATAAGTCAGgtcagaACCAGGCTCAGTGCACACCCATGCCCCTGCCGACACTGGGCACCCAGAGGATCATCCAGGGCAATGGCACGACTGTGGGCACAGTCATTTCCCTGCAGTGCCCAGCCAAACACAAACTGGTTGGACGTGAGCTAAAGTGTGTCTTGGGCGCCAACAGCACCCAATGGGTGGGAGAGAACTACTGTACACCTCTGTCTCcctatgaggactatggtttcCGTGTGGCTATGCTGGCATCCATCGTAAGCTTGGCCATAATCTTCTTCATGTCTGTTGCCTTCATCACCTGCTGTTTGCTCGACTGTATCAAAAAGGACAAAAGGAAAAAGCACGACAGGGAGTCAGATATGTGGGATTGGGAGGAGCAGGCCCAACATCAGGAGGACAACAGCAGGTCTCGCAGCGGCCATAAAGGcaggaacaacaacaacaacaatacccAGGAGAAGGTGCTTTCACTGTGGGACACCGATTACTCAGCCATGTGTGACAACATGCAAGTCTGCAGATGTCATCAGCAGTTCGCCTATAGTGCTGACTGCACATATGGCCGCACTCCTCTGCTTTCTACTCTCCCCGGCTATAACCAGCCTCTCTCACTCCGAAATTTAGAATCTGCACAGATCTCTGGTCCACCTGAATACAACGGACCTCCTCAGTCCTCCAGTCAAACTATGAACCCAGATCACCAGATCTCAGCAATGGGGCCTGGTGTGGTGTGGCAGTATGGAGGACAGCAGAGCAGTTTGTCAGGAGTGAACCCATCAACCACAGATGAGTCCAACACGAGGAATAATAACCCTGCCAAAGACTTTTCCATTCGTATTATATCAGTGTGAGGACACATTACACTGGAGGTGAATACCATGAGTCAAGAACTTGTTTACTGGCCAAATATGGTGGTCTGTACGATGAGGACTATGGGAAGTAATAACTGAACATTCCTTGTCTTGTTGAAATTATAACGTCTGCAGTTCTGCACAGTATAAAGGCTCTATAGGCATACTGATCTGACAGACAGATTATGTGCCTTTTGTAAACTGTAATGGCACACCGCCCTCTGTCTGAAAAAGGGAGCCATTGCACTTTCAGGACATCAGCCTTGTTGGATGACACTCCATGTAATTAGAAAGTCAAGGGACATTCATGCCCTCAATTGAGCTTTGCAGAAACCAATATCAAATTGTTATGTTTTGGTTGAAGTTAACGattaaggtgttttttttagttCACAATACATTGTAGACAGCTGAGGAAGTGGTCTGAGAAACTCATCCAGGCCTGGAAAGTCCACTTTGTTTAGTAAGGAGAGCAGCTGGAAAGCACAGTTTGCCAGtgtgtacatttattttaaagaatgtaaataaatgaaaaacttCTACTGATAA

Function

GO: NA

KEGG:

id description
K23821 SUSD3; sushi domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800588.1 True 1952 mRNA 0.48 5 16297931 16304967

Neighbor

gene id symbol gene type direction distance location
fgd fgd3,LOC104966710 coding upstream 14132 16225552 ~ 16283799 (+)
LOC120558327 LOC103361995,LOC104966709 coding upstream 77673 16176577 ~ 16220258 (+)
fbxw12 fbxw12 coding upstream 124330 16162697 ~ 16173601 (+)
LOC120559808 NA coding upstream 161118 16135340 ~ 16136813 (+)
LOC120559610 fbln2 coding upstream 170855 16103359 ~ 16127076 (+)
wu:fl23c11 NA coding downstream 104314 16409281 ~ 16418412 (+)
LOC120558716 creld1,LOC102797660,LOC103361984,LOC100691430 coding downstream 113868 16418835 ~ 16424181 (+)
ift122 ift122,LOC102796889 coding downstream 124612 16429579 ~ 16450630 (+)
LOC120558717 rho coding downstream 146801 16451768 ~ 16459991 (+)
trh trh coding downstream 306250 16611217 ~ 16613788 (+)
G50218 NA non-coding upstream 12172 16285557 ~ 16285759 (+)
G50077 NA non-coding upstream 346759 15949249 ~ 15951172 (+)
G50029 NA non-coding upstream 592463 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 628387 15667249 ~ 15669544 (+)
G50011 NA non-coding upstream 658630 15637483 ~ 15639301 (+)
G50280 NA non-coding downstream 120651 16425618 ~ 16425820 (+)
LOC120558722 NA non-coding downstream 239302 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 262034 16567001 ~ 16569382 (+)
G50320 NA non-coding downstream 275092 16580059 ~ 16580993 (+)
G50326 NA non-coding downstream 300998 16605965 ~ 16626218 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 328600 15885990 ~ 15969331 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other upstream 430562 15776217 ~ 15867369 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other upstream 498974 15772217 ~ 15798957 (+)
G49776 NA other upstream 1720359 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 1730475 14564867 ~ 14567456 (+)
LOC120559119 LOC104967193 other downstream 17854 16322821 ~ 16379645 (+)
brpf1 brpf1 other downstream 75077 16380044 ~ 16396208 (+)
LOC120559923 NA other downstream 92702 16397669 ~ 16408461 (+)
eif2d eif2d other downstream 672930 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 880944 17185911 ~ 17197173 (+)

Expression


Co-expression Network