LOC120559196 (LOC104963628)


Basic Information

Item Value
gene id LOC120559196
gene name LOC104963628
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18943406 ~ 18946367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800737.1
atattgattttctttttatgttaGAACTTTAGAGTATACAGAGCATCCTCAACACAAGCCATTAATCAAAACCGATGTTTAAAGAGGAAGGTGAAGAAGGGGCACGCAACTGTTCAATTTACTTTATGTAATCACTATAGCAGGGCATAGCTAAGGTCATTCAACTCCACATGCTCCTGATTACAGGCTAATCAACCACGACCATTTAACCAATCAGTGCCGGGCAAAACAAAAGGGAAACACCAATTTAAAACCAGGGGCCCACTTCAGCTCATTTTTACCGTCTGTAGCGTTTGTCACCAATTTAATTCATCATGCAGAAAGGTGAATGGTGAATGGCTCTTTTTATCAGTTACAGCACACTGATGTGTACTATAACTGGTAGACAGATTTGTCTAGCATGAACCAAAGAGCTTTCacataatgaaaagaacaaaacgGGTGAAATTATGGACGTACTCGCATGGACACAatgttttttcatatttaacTGCACAGTCTTAACCTTAGCAGTAGTATTGGGTTTACCTGGGAACTTGTGGGTTTGTTGGGTTGTTTTCAGGACCAAGAGCATGCAGACCTTCAATAACGCGCTGCTGGTCAGCTTGGCCGCCAGTGACCTATTGAAGTGCTCTGTGGACACACCGCTGCTGCTCTTCTCTTTTCTGCGTTACAGGAAGGACAGCCAGGTGTCAGTGTCTGTGTGCACCCTGCAGCAGTTCACCTATGCCCTGTGCAGCTGTGTCCAGCTGCTCACGCTTGTCAGCATCAGCGTGGAGCGCTTCCAAGCCATCGCGTTCCCTTTCCAAACCGAGAGGAGGAAAGCGAGGGTCAGTCTCTGGATCCTGTCCATCTGGGCATGCGGACTCATTTTGGCTATAATCTCTCTGACTCTTTCCAAAAAGGCGCTTTTTTACATGCTCTGCCGTTCGCACCTCGGGGGTCATGGCGACGAGCGTCTACAATATTCGGATCCATTTGGACCCTACGTGCTGGTCCCGGTGTGGGTATTGTCTCTGACTGTGATTGTTATCCACTACGTACGGATATTCAATGTTGTTAGACGGCACCGAAAGAAAGTGTTCAGTCAGGAAGTCCAGCTGAGGGCGACGGTCTCGGAACACGTCTGTGGCTGTGTGAGTGTCAAtgcttcagcaccacggacagctccGCCGGGCTCCTTCAGCCCGTTGCCTCCCAGCCGGACGGTGCTCTTGGTGGCCGAGGCCAGTGCTCCCTGTGCGGGCTCCTCCACAGGAGGCGCCCCAGGAAGACCTCCGGAGATTGTTGGGGCAGTGTGTCTTCTGACCCCTGGGGCCAGGGAGCGGGGGAAGAAACAGATGGAAAGGAAGCTGGCCCAGCGTTTTGGGTACATAATCATTGCGTTCACGCTTTCCTGGGTGCCTATGGTGGTTATTTTGCTAACGAACGTCATCTCGTGGCATAACACTGACAAATTGCTGATGGAGCTGGAGACATCAGCTATGGTGCTGACCTGTGTGCAGGCTGCAGTGGATCCCCTCATCTATACATTAGTCACTAGACAGTTTCGCTCTGAACTCAGCAAGATCCTCTCCTCCATCCCAAGGTGTCCCCGAGAACGGAGTGCCTGAAGGTTCAAAAATGTTTGAACATTTGGATCACATGTACTGCACTTTTGAGAaatcacgcacgcacacacacacctgatagTTGACATCTGTCTGAATGGCTGGATATGAAACTGTTGTGCTGTGTGCTTCTCATTACATTCAAGTATATACAACAGGGAAAACATGAAATTAGGCTAAAAAAGTGAATgatcaaaataataatctttcatTATTAGCTAAGCTATTTCATGGTGCATAACcatgtcactcacacacagagtgatTTAGAGGTGAATGAAAAAGAGAGACCACAGATTCAGTATTTGTGGCAGATATAGATGTTTTATCAGGCGTTTCACAGTCGGGACACAAGACAAGGTCATAAATAATATCCAACACCTGACAAGATACGCACAGCAGTAGTCTCAACAACAGCAGGTGGAATAGGAGGGCAAAgcaaagagtgagagagaaactgACTGAGCCCAGAAAAAAGACAATCAAAGGGGAGTAcataacagagaaagagagagacaaaacacaatcacagacatctgtttttgttgtttgtaaataaaaatgcaatCCTTTGACACTTTGAGTGGAGAAATgcttacataataaataaactgtGTCATTTGAAAGTGCAGCTGACACAACACAACCTGTCTTGAAACAGGGAAGCAGTAAATAATTCACGTTAAATCACTGTCCaagcaa

Function

NR:

description
PREDICTED: D(2) dopamine receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800737.1 True 2312 mRNA 0.46 2 18943406 18946367

Neighbor

gene id symbol gene type direction distance location
ddx20 LOC107556298,LOC107556300 coding upstream 67 18935021 ~ 18943339 (+)
LOC120558625 LOC101472665,LOC100697880,LOC103370865,LOC102215929,LOC104931656,LOC108235233,LOC103467457,LOC101161555 coding upstream 16923 18886781 ~ 18926483 (+)
LOC120558626 LOC108235173,LOC104963598,LOC102083184 coding upstream 57817 18883396 ~ 18885589 (+)
si:ch211-117c9.2 LOC103370868 coding upstream 88069 18842185 ~ 18855337 (+)
LOC120559184 NA coding upstream 167884 18758936 ~ 18775522 (+)
LOC120558362 LOC104955725,LOC103367226 coding downstream 251440 19197807 ~ 19201491 (+)
LOC120559315 LOC103367228,LOC104955723 coding downstream 258852 19205219 ~ 19220935 (+)
apeh NA coding downstream 278893 19225260 ~ 19235386 (+)
tlr9 NA coding downstream 289182 19235549 ~ 19240609 (+)
LOC120559318 NA coding downstream 295165 19241532 ~ 19327554 (+)
G51028 NA non-coding upstream 86880 18855367 ~ 18856526 (+)
LOC120559607 NA non-coding upstream 105975 18835280 ~ 18837431 (+)
G51017 NA non-coding upstream 185009 18758044 ~ 18758397 (+)
G50994 ncoa6,LOC105926085 non-coding upstream 255113 18686786 ~ 18688293 (+)
G50964 plcg1 non-coding upstream 303226 18636601 ~ 18640180 (+)
G51155 NA non-coding downstream 493320 19439687 ~ 19441326 (+)
G51165 LOC103362816 non-coding downstream 624826 19571193 ~ 19608956 (+)
G51167 LOC101075728,LOC104965662 non-coding downstream 641868 19588235 ~ 19590976 (+)
G51168 LOC102792445,LOC100695140,LOC103362820,LOC104933206,LOC101467308 non-coding downstream 645101 19591468 ~ 19593624 (+)
G51174 bgn non-coding downstream 670748 19617115 ~ 19618210 (+)
G50983 LOC103366028 other upstream 257104 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 643073 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1157008 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 1746233 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 1948705 16977897 ~ 16994701 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 510110 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 821259 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 1050110 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 1117625 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 1499604 20445971 ~ 20532569 (+)

Expression


Co-expression Network