LOC120559207 (arl6ip5,LOC102786473,LOC101476305,LOC101073283)


Basic Information

Item Value
gene id LOC120559207
gene name arl6ip5,LOC102786473,LOC101476305,LOC101073283
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13527308 ~ 13531488 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800757.1
TCCTCCACGCTCAGACGGTGATCAGCTGGCCTGTCAAATATTACGCAGCGCGTGtgggttttgtttgtgttcttgtgtcGTTTCACTAGCTACACGTTGAAGACATGGCAGCCAAGATGGAGCTTGCACCGCTCAGACCTTGGGATGATTTCTTCCCCGGATCGGACCGGTTCGCCAAACCTGAATTTAGAGATTTAACAAAGTGGAACAACAGAGTGATCAGTAATTTACTGTACTACCAAACGAATTATTTCGCCGTGGCACTGGTGGTTTTCCTCATTGTAGGGTTCCTGAACCCATTTGGCATGTTTCTGGGAGGAGCTGTGGTGACTCTGGTCTTCGTGGGTTCAGTGTGGGCAGGAGAGAACCAGGCCATAGTTAAGAACTTTAAAAGGAAGAATCCCACTCTGTTTGTCATCGTGGTCATGGTCACCAGCTACTTTCTGCTGTCGCTGTGTGGTGGCGTCATGGTCTTCATCTTCGGAATCACCTTCCCTTTGCTGTTAATTCTGATTCATGCCTCCCTGAGACTGCGCAACATGAAGAACAGACTGGAGAACAAGATTGAGGGAGTTGGGCTAAAGAAAACTCCCATGGGCATCATCATGGACCTCCTGGATCAGCAGGAGGAGAAAATGAACAAGATTCAGGATTTCATTGAAAGCAAACTGAAGGAATAATGCTCTAGCCAAACGTGCCAGAATGTCCATAGTATAGTCCCATTTGTTGAGTTTGTATCCCCTCTATACATGTAAAGTTACTAatgtttgcattttgttttactttattctTTTTTGTGTGACTGAACTCACAGATGGATAGTAACATTTTAGAGCACGATTTGCACAATCACAGCGTGGATTGGATGTTGAGAGGCACCAAAGGCTACCAAAGGGCATCCCTTTGTCAAAAATGTTCCAAAAACAGCTAATTTCCCATGTTGACAACACACTTTGTTCCACATGatgactgatgatgatgatttgttCATCCCTCTCGACATGGTGTATTTATTTCAGCAAAATGAAGCAGAATGTCTGAACACAATATCTAATGCTGTTAATAGATATCAATTGTGTTTGTTCTAAAGAAGAAATCAGATACTTTCAGTTTGCTACCTCAAAACAAGCATGTTTAGATTACCCAACACCCAGTCAACTGTTAACTGCTTATTAAACAGCAATAACTCCCATCTTGTCACTCCAAGAGCTGTATCAATACTGATCTGAGACCAGTTTGCTTCTTGTGTAGACATGGTTATATGGCCTGACTAATAATCCTGGAGTTGAAATATTCCTATTCTCAAAAGATGTGTGCACACAGTTCCTGACTATACAGGCTGGCCTGAGTGTATCTATTCTGATCACAGCTATGCAATGTTGAAAAATGAATGGCAAGTGCCGTTTTATTGTTTGAATATTATGTCATGGTATGTACATGTTTGTTCTTATTTCTgatgtgtctttatttttttaatatagcaTGCAGAAATGTATAAAATGGCTACAGGATACAAAGTACATACTTTTGGGAATGAGACAAAATGAGTGATTCAATTAATGAACTTCCCATGCTATTTTCCCCATTCCATGTTGGGATCAAATCCTGTTCCCTGTTTAAAAATGCAATCTAAATTAAATCTGTCATCTGTAATGTTAGGTGTTCTTTTTCAATGCTGTTAATCCTGATAGTAAGAGCAGTTGTTTCCTGTTTGCTTTTCCACATGTGCACATTAACTGCAGTTTGTGCATGCTGCCTTCACAAATGGCAGTTCAGAAAGACTATGTTTTATGGATGCTATCTTATATATTCTCTATgtttttatgtgactttttcatttttgcaaAGTGATGAGAAGTGTGATTAAATCACAGAACTGGAAGTAAAACATGGCTGTCctctaaaaataaagataaccGGATTTA

Function

symbol description
arl6ip5 Involved in several processes, including intrinsic apoptotic signaling pathway in response to oxidative stress; negative regulation of mitochondrial membrane potential; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within cellular response to organic cyclic compound and protein transport. Located in membrane.

NR:

description
PREDICTED: PRA1 family protein 3-like

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800757.1 True 1925 mRNA 0.40 3 13527308 13531488

Neighbor

gene id symbol gene type direction distance location
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding upstream 27866 13474266 ~ 13499442 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding upstream 75401 13448308 ~ 13451907 (+)
pm20d1.2 pm20d1 coding upstream 234996 13284381 ~ 13292312 (+)
lemd1 NA coding upstream 243057 13272566 ~ 13284251 (+)
LOC120558998 LOC104924681,LOC104961357 coding upstream 267987 13255847 ~ 13259321 (+)
LOC120559547 mitf coding downstream 33137 13564625 ~ 13605435 (+)
LOC120559296 ppp4r2 coding downstream 111141 13642629 ~ 13649896 (+)
guca1b guca1b coding downstream 120880 13652368 ~ 13654660 (+)
oard1 oard1,LOC106909399 coding downstream 124065 13655553 ~ 13657376 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 613739 14145227 ~ 14185140 (+)
G49508 NA non-coding upstream 80573 13445139 ~ 13446735 (+)
G49502 NA non-coding upstream 94091 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 148899 13365731 ~ 13378409 (+)
G49461 NA non-coding upstream 219736 13306840 ~ 13307572 (+)
G49346 NA non-coding upstream 598837 12928256 ~ 12928471 (+)
G49562 NA non-coding downstream 85389 13616877 ~ 13641874 (+)
G49572 NA non-coding downstream 105378 13636866 ~ 13639093 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 193600 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 218070 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 227099 13758587 ~ 13992115 (+)
LOC120559134 dvl1 other upstream 641084 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 682874 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 869000 12652384 ~ 12658308 (+)
G49209 NA other upstream 1068869 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 1223905 12283427 ~ 12303403 (+)
G49538 lmod3 other downstream 902 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 127244 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 581527 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 674109 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1033379 14564867 ~ 14567456 (+)

Expression


Co-expression Network