cebpb (cebpb,LOC107391299)


Basic Information

Item Value
gene id cebpb
gene name cebpb,LOC107391299
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11969539 ~ 11971359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800846.1
CGAGACAGGAAGACCTGTCAATTCCTCCCAATCCATGAGCAcggcctctgcaaaatagttgcACTAGCCTACATGTTGTCACAGACAGTGACACGGGGGTTTTAAGCTGCATTCCGACACAAGAGCCATTTCACAACTGAGGCAACTGAACCAAAACCTCCCTGGGCGTCTCATCTCAGCCCTCCATGCTCCTGTAATCCGGCGGGTGTTAAGATCCATGGAAGTAGCCGGCTTCTACGACGAGGGCGGATTTGCTATCCACAGTAGAGACAGCATTATCAGTCCCACCAGCAACGGCTCGTACTGGAAGCTCGGCGACTCGATGACGGAGCTGGGCATTGAAGAGCGGGAGAGAGCGATAGACTTCAGCGTTTACCTGGATTCAGCTTTGCACTGCCCGCAACTGGCGGCGCAGacgcaccaccaccaccaccaccagcagcagcagcagggggacGTTTTCTCAGATTTCCTGGCGGAGAGCAAAATCAAGAGAGTTGCAGCTTTACATAACTACAAGAACTATTCGCTGTTGAACGAGCTGGAGACGAATCAGTGCGACAACTTGAGGGACCCCAGGGAGTCCTACGCGCTGGGTTACGCTGAGCTGCAGGAGACCCGTGTGGATAGTGTGCTCAGCCCTGAACTCATCGGGAGCCGCtacagagctgctgctgctgctgctgccgccgccgCTGAAAGAGACGACAGTCCGGAAGACGTGAAGATGGAGAACGGGTCGTCTGGTTTTGACATGAGGTCTTACCTCCATTACCAGTCCACCAGCGGCAGTATTGGCAACATCTCCACCGCGTCCTCGACTTGCTCCAGCCCGCCCGGCACACCTGCCCCGTCAGGTAAAAGCAGGTCACCATCGCACAGTGGCAAAATGTCCAGCGGGAAATCAAAGAAACGCCTTGACAAGGACAGTGACGAGTACAGGGTGAGGCGGGAGAGGAACAACCTCGCCGTGAGGAAGAGCAGGGACAAAGCCAAAATGCGCAACTTGGAGACCCAACATAAAGTGCTGGAACTGGCTGCGGAGAACGATCGTTTACAAAAGCGTGTAGAGCAGCTGTCCAGAGAGCTGGCCACCCTGCGCAACCTGCTCTCTGCCACCGGACAATGTTAGGAACCTCCAGCAGAGACTCCACACAGACCTGCGGGCTGATTGTCTTGTTATTGATGGACTTTAGAGCCTGAGGTGATCCACTGAAAGTGTTGAAAACGGTACGCTTCACAGGTGAAGAATGCGACCACCAGTTTACAGGGACAATAATGGGACTGAAGCAGTGGGTGCATGGATTGCGCTATCATTCACCAATCTTCACAAGTCACCATAGCTTTATTCTCAGATGTAATTGTTGTGTATACAGTATTTTGGtgcatattttacatacatgCGAGTGGATTTCTACATTTTGTGTTTCTGGAGCAATGGTTGTCAAGGGAAGAGTTGCTGCAGTGAAATGATGCAACTCTTTGTAATAGTATTGCCAATGAATGAAATAAGTCTAATTATTTAATATCGAAAGGGGAAATGCTTTAATTGTACTTGATATTTTATTGAATTAAACAGATTTATACTTTCTCTAAACAATTTCATTTGTAatttcttttctccttttcaAGCAAGTGCAGACAGTGGTGTTGTGCTTGCCTTATAATATTCACACATTCATGATAGTCAGACTGTGTACTAGGGTGTGTTTCACTACAACATATTGCAGATTCAAATAACTGGCTCAACAATAAGGCAAATTTGCAATCTTTTTTAGGTCAATATGCCGAAATTGAAAGAGAAATAAACATGCTAAAGGA

Function

symbol description
cebpb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA methylation; response to bacterium; and response to yeast. Predicted to be located in nucleus. Is expressed in several structures, including EVL; digestive system; macrophage; periderm; and yolk syncytial layer. Orthologous to human CEBPB (CCAAT enhancer binding protein beta).

NR:

description
CCAAT/enhancer-binding protein beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009617 response to bacterium biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800846.1 True 1821 mRNA 0.49 1 11969539 11971359

Neighbor

gene id symbol gene type direction distance location
LOC120559303 mmp19,LOC101481755,LOC102777654 coding upstream 152985 11813252 ~ 11816554 (+)
pym1 pym1,LOC102777374 coding upstream 157728 11807712 ~ 11811811 (+)
pan2 pan2 coding upstream 191704 11760824 ~ 11777835 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding upstream 223797 11737286 ~ 11745742 (+)
letmd1 NA coding upstream 256852 11706243 ~ 11712687 (+)
klhl12 klhl12,LOC102781379 coding downstream 9425 11980784 ~ 12009924 (+)
LOC120559247 NA coding downstream 37348 12008707 ~ 12017567 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding downstream 46305 12017664 ~ 12023947 (+)
kdm5bb LOC103354421 coding downstream 71736 12043095 ~ 12063263 (+)
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding downstream 97054 12068413 ~ 12082842 (+)
G48986 NA non-coding upstream 61667 11907779 ~ 11907872 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding upstream 66060 11881963 ~ 11903479 (+)
LOC120559701 slc13a3,LOC103399527 non-coding upstream 106599 11860102 ~ 11862940 (+)
G48876 NA non-coding upstream 216302 11752998 ~ 11753237 (+)
LOC120559500 NA non-coding upstream 248622 11712804 ~ 11720917 (+)
G49086 NA non-coding downstream 170783 12142142 ~ 12142527 (+)
G49094 NA non-coding downstream 174845 12146204 ~ 12146526 (+)
G49105 NA non-coding downstream 240385 12211744 ~ 12212515 (+)
G49106 NA non-coding downstream 248654 12220013 ~ 12223054 (+)
G49157 NA non-coding downstream 392734 12364093 ~ 12364441 (+)
G48765 NA other upstream 653547 11314662 ~ 11315992 (+)
G48752 NA other upstream 795885 11172595 ~ 11173654 (+)
G48640 NA other upstream 1219111 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1818288 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 2044458 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 113093 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 121420 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 210850 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 252208 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 274286 12245645 ~ 12254060 (+)

Expression


Co-expression Network