LOC120559288


Basic Information

Item Value
gene id LOC120559288
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8569081 ~ 8570331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800909.1
TTTCTTTTCAGAAGACAGAATGAATAACTCCTTCTGTGCTGGCGTCAGCTTTGACTTTGAACACAGATTCCTGCCTCCTGTTTACATCCTAGTCTTCATCATCGGTCTGCTAGCTAATGGATGGGGATTGAAGTCTTTGCTGCAGAAATGGAAGAAACTGGGAATCGTTAATGTGTTTGTTCTCAATCTTGGACTTGCTGATATTCTGTACCTGCTCACACTCCCCTTTTTGGTGGTGTACTACTTTATGAAGAGCAAGTGGATCTTTGGAGACGCATTCTGCAAGATAACACGATTCTGCTTCAACCTGAATTTATATGGCAGCATCGGGTTCCTTACATGTATAAGTGTGTACAGGTACCTGGGTATTGTCCATCCAATGAGAGTGATGGGAAGAATAACTGTCACTCACTCTGTGGGGATCTCAGTCATGGTTTGGTTCTTGGTGAGCGTTCAAAGTCTTCCAGGCATGTTCTACAGCAAAACATTTGGAAACAAGCCTGGGAAATGTTATGATACTACCCATAAGATATATGTGGATGATTACCTGAAATACAGCCTTGGATGGACATTCACTGGGTTTTGTATCCCATTGCTCATCACACTGGGCTGCTATGGACATGTGATTGTCGTTCTCTGCCGCACAAATACCACTGACAAGGTACTGAAACAGAGATGCTTGAAGTTGTTGTTCATCGTgattcttctcttctctgtttgTTACATCCCCTATCATGTACTGAAGAACCTCAACCTCTGGTCAAGAGTTCTGCAAAAACAGAAGATGTGCCGTAAATGGTCTAATGGAGTCTACATTGCTCATCAGATAAGTCGTGGCCTCGTGTGTCTGAACAGTGCTCTCAACCCTCTGGTTTACCTCCATGGAAATGAAGATATTCCTGCTCAGCTCAGACGACGACTCCGGCAAGTTCGTCGGATGTTCAGCCGGTTGTTTCGGTCAAACTCCGGCTCTGTGCCTGTGGCTCAAACTGCAGATGAAGTTCAACAAGAGTTAGGATTTTAACATGTACTGTTTTAGTAATAAAGTTATAGCTATCATAAAAACTAGTAGTGCGAATTGATTACAATGTAAATTAAATCTTCAGTCTTTTTCTTGAGTTGCTTTCTTTGcctaaaaaaaatagttttgctGTACGTGCTGTGATCTTAGTGTTTCATGATGTGATTACCACATGTTGATAAGTCTTCCAAATAAAGGAAGTTAAGATAAACCACAGCTCTTGATGTGTC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800909.1 True 1251 mRNA 0.42 1 8569081 8570331

Neighbor

gene id symbol gene type direction distance location
LOC120559290 NA coding upstream 7998 8558038 ~ 8561083 (+)
LOC120559291 NA coding upstream 11112 8556678 ~ 8557969 (+)
LOC120559765 NA coding upstream 33064 8534741 ~ 8536017 (+)
LOC120559764 NA coding upstream 47451 8520644 ~ 8521630 (+)
LOC120559918 NA coding upstream 99502 8468520 ~ 8469579 (+)
itih6 itih6 coding downstream 35532 8605863 ~ 8632825 (+)
LOC120559286 NA coding downstream 75447 8645778 ~ 8654316 (+)
pfdn4 pfdn4 coding downstream 630421 9200752 ~ 9210559 (+)
LOC120558451 LOC100703402 coding downstream 663829 9234160 ~ 9236016 (+)
cd40 NA coding downstream 787641 9357972 ~ 9366078 (+)
G48063 NA non-coding upstream 36280 8532596 ~ 8532801 (+)
G48039 NA non-coding upstream 120767 8448107 ~ 8448314 (+)
G48018 NA non-coding upstream 187352 8381491 ~ 8381729 (+)
G48017 NA non-coding upstream 187653 8381087 ~ 8381428 (+)
G48002 NA non-coding upstream 235550 8332522 ~ 8333531 (+)
G48075 NA non-coding downstream 104142 8674473 ~ 8677331 (+)
G48079 camk1g,LOC102780232,LOC102204221,LOC101478990,LOC103361639 non-coding downstream 120372 8690703 ~ 8700088 (+)
G48158 NA non-coding downstream 143988 8714319 ~ 8714568 (+)
G48160 NA non-coding downstream 145556 8715887 ~ 8716184 (+)
G48176 NA non-coding downstream 173303 8743634 ~ 8747729 (+)
LOC120559763 NA other upstream 71687 8478123 ~ 8497394 (+)
pkig pkig other upstream 188503 8342750 ~ 8380578 (+)
G47903 LOC104965021 other upstream 452853 8112441 ~ 8116228 (+)
ccm2l ccm2l,LOC102778549 other upstream 1848149 6697993 ~ 6720932 (+)
G47444 NA other upstream 2368487 6199046 ~ 6200594 (+)
LOC120559293 pifo other downstream 84081 8654412 ~ 8662891 (+)
G48077 NA other downstream 109951 8680282 ~ 8687964 (+)
G48162 NA other downstream 146436 8716767 ~ 8726552 (+)
LOC120559255 tshz2 other downstream 420156 8990487 ~ 9121912 (+)
G48347 NA other downstream 833893 9404224 ~ 9429947 (+)

Expression


Co-expression Network