LOC120559290


Basic Information

Item Value
gene id LOC120559290
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8558038 ~ 8561083 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800912.1
CGTCAGATTCATGTGTCAATATTGGTATGATTAAGCATAATGTGAAAACAACACAGATTAAGAGCTATCAGCATAGTTGTGCAAAATCCCTCCAACTACAGTGATCTTACTTACTTGATAAATCATGGTTTGAGGAAAACAGTATTGTACAACAAATGTAATGATAGTGATGACAAATCAGGAAAAGATAAGATACCATAAACAAGAGTTACACCAAATGTAACAAGacaaagagtctacagccatccTGGTTCATCTCTGTGAGGCTACACTTTTAGGCACagctgtgctttgagctaaatgcttgCACATCTTAGTTTAGTGTTAACACAAACTGCATCTGAGGATGACAGGAATGTCACTATTGGTtttgtcataaaccaaagtgaacaaataaaagatttgtcctgatgatggcactagatgaCAAGTTTATCAGGGTGATATCTTCCAACAAACCTGAATGTGACAGGATGGGGAGCCATATCTGAATGTTGAATCTGAAGATTTCTGATCTAATTAGGCCACAAAAAAACTGACCGATTTGTCTTATTTCACAGGTAGGAATTGTCGTCGATACTGACTATGTATTGGattagactccatcattatGAAATGATATTTTTAAGAGGGGTAGAAGGCCTGAAGATGATCCCCCGATGGACtctagacactgatggtggTGTGAGGAGCCCGAAGACCGAACCGAGGAGCCGACGGCAGTGCCTGGCGGAGGAGGAACCAGGAGCCGTGCAAAATGAAGACCAGAGgagaaaggggaggaggagggttgtgctcttagcctgaaatgacaactgagcagcagagagagacaggttcaAAACAGGGATGGCATTCTGTGATGGCTCGTGAAATTCAAGGCCGCTTCTCATTGGTTAACATGAAAGTGAACGCCTCTAACAGCTGTTCAGattagaagagagagaaaagtgattaggtttagaagtcttcctgcaaGAATTTACGCTAAGCTCCATTAACAAACtagttttaatttttaattttaattttatcatTACCCGTCTTGGAAGACCACatttaaatgttcagtttaatcGTGAATCATGATAAGATTCTGAGAATAACGGAACTCCTACAGgaagctatttaaaaaaataaattgcccCAGTTCCTTTTGGGCACCTTACCATTTTGTCATTGCATTTCAACATTGCACCAACTCATCTTGGTAAGATGAGTAGGTGATAAGATTCTAAAATTAATGCAAATTTGACAGGAAATGACCTCTAAAGACATATTTCCTCATTCACTTTAACCATTCTCTGCACCATAGCGTACTTGCTTCAAAGTATTTGCTGCTTTTAGGAAGACAGAATGAAGAACAACTCTTTTCATTGCATCAACTTTGAGTTTACAGGCCAATTCCTGCCTCCTGTTTACATCTTAGTCTTCATCATCGGTCTAGTAGCTAATGGATGGGGATTAAAGTCTTTGCTGCACAACTGGAAGAAACTAAAGatcatcaatgtttttgttcTCAATCTCGGACTTGCTGATATTCTGTACCTGCTCACACTCCCATTGTTGATGGTGTACTATGTTTTAAATAGTAAATGGATCTTTGGAGACACATTCTGCAAGATAACAAGATTCTGCTTCAACCTGAATTTATATGGCAGTATCGGGTTTCTTACTTGTATAAGTGTGTACAGGTACCTGGCTATTGTCCATCCAGTGAGAGTGATGGGAAGATTAACTCTGACTCACTCTGTGGGGATCACAGTCATGGTTTTGTTTTTAGTCAGCGTTCAAAGTCTTCCAGACATGTTCTACAGCAAAACATTTGGAAATAACACTGAGCAATGCTTCGATACCACCTCTGACATCTATGTGGATGATTACATTAAATACAGCCTTGGATGGacattcactgcattttgtaTCCCATTGCTCATTACACTGGGCTGCTATGGACATGTGATTGTCGTTCTCTGCCGCACAAATACCACTGACAAGGTACTGAAACAGAGAAGCTTGAAGTTATTGTTCATCGTgattcttctcttctctgtttgTTACATCCCCTATCATGTACTGAAGAACCTCAACCTCTGGTCAAGAGTTCTGCTAAAAAAGAAGATATGCCGTGAATGGTCGAATGGAGTCTACATTGCTCATCAGATAAGTCGTGGCCTTGTGTGTCTGAACAGTGTTCTCAACCCTCTGGTTTACCTCCATGGAAATGAAGATATTCCTGCTCAGCTCAGACAGCTGCTCCAGCAAGCTCGTCGGATGGTCAGCTGTCCGCCTCCAACAAACTCTGCTGGTGTGCCTATGGCACAAATCACAGATGGAAGTTATAGaacatgttaaaacatttttctgtatgtcattattttctttctattgcCACATCTATATTACGTTTATATTTGTGCTATGCCAGGGGTCtccaacgttttttaggccaaggacccatTAACTGAGAGAGAAACGGAGAAGGGACCCCTACTAcaaatattgtataaaattcagtataaaagttgcatattaaactgggcttaCAATTACATGTGGGTGgcctaaagcatttaaacatacatgtttagtgcatagaataccaagctattaaataattgttggcatgattct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800912.1 True 2634 mRNA 0.40 2 8558038 8561083

Neighbor

gene id symbol gene type direction distance location
LOC120559291 NA coding upstream 69 8556678 ~ 8557969 (+)
LOC120559765 NA coding upstream 22021 8534741 ~ 8536017 (+)
LOC120559764 NA coding upstream 36408 8520644 ~ 8521630 (+)
LOC120559918 NA coding upstream 88459 8468520 ~ 8469579 (+)
LOC120559920 NA coding upstream 91037 8465976 ~ 8467001 (+)
LOC120559284 pfkfb1,LOC100700435,LOC101066702 coding downstream 970 8562053 ~ 8605758 (+)
LOC120559288 NA coding downstream 7998 8569081 ~ 8570331 (+)
itih6 itih6 coding downstream 44780 8605863 ~ 8632825 (+)
LOC120559286 NA coding downstream 84695 8645778 ~ 8654316 (+)
pfdn4 pfdn4 coding downstream 639669 9200752 ~ 9210559 (+)
G48063 NA non-coding upstream 25237 8532596 ~ 8532801 (+)
G48039 NA non-coding upstream 109724 8448107 ~ 8448314 (+)
G48018 NA non-coding upstream 176309 8381491 ~ 8381729 (+)
G48017 NA non-coding upstream 176610 8381087 ~ 8381428 (+)
G48002 NA non-coding upstream 224507 8332522 ~ 8333531 (+)
G48075 NA non-coding downstream 113390 8674473 ~ 8677331 (+)
G48079 camk1g,LOC102780232,LOC102204221,LOC101478990,LOC103361639 non-coding downstream 129620 8690703 ~ 8700088 (+)
G48158 NA non-coding downstream 153236 8714319 ~ 8714568 (+)
G48160 NA non-coding downstream 154804 8715887 ~ 8716184 (+)
G48176 NA non-coding downstream 182551 8743634 ~ 8747729 (+)
LOC120559763 NA other upstream 60644 8478123 ~ 8497394 (+)
pkig pkig other upstream 177460 8342750 ~ 8380578 (+)
G47903 LOC104965021 other upstream 441810 8112441 ~ 8116228 (+)
ccm2l ccm2l,LOC102778549 other upstream 1837106 6697993 ~ 6720932 (+)
G47444 NA other upstream 2357444 6199046 ~ 6200594 (+)
LOC120559293 pifo other downstream 93329 8654412 ~ 8662891 (+)
G48077 NA other downstream 119199 8680282 ~ 8687964 (+)
G48162 NA other downstream 155684 8716767 ~ 8726552 (+)
LOC120559255 tshz2 other downstream 429404 8990487 ~ 9121912 (+)
G48347 NA other downstream 843141 9404224 ~ 9429947 (+)

Expression


Co-expression Network