LOC120559296 (ppp4r2)


Basic Information

Item Value
gene id LOC120559296
gene name ppp4r2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13642629 ~ 13649896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800919.1
CATGGATGTATTGGTATTAAGAGATTTTTATGAACGTGGACGCATCTTCCGCAAATACGTAATTTTAGACATGCGCACTCTTCACTGCCAACAGCTTTGTTGGGCTGCTGGTTGCTAGCTACATGCTACTGCTAACTAGCAAGTAAGATTTCCTGCCTGTGACTGGACACAGCTATGGACATCGACGCGTTATTGGAGGCGTTTCAAGATTTTGAGAAGAAAGGCAAGAAAGAGACCTGTCCGGAACTAGAGCAATTCCTGTGTCATGTTGCCAAGACGGGGCAGCCAATGATCTCGTGGTCACAGTTCAAAACATACTTTGTGTTTAAgttggaaaaagtcatggatGATTTCCACGCTTCAACACCAGAACAGAGAGCACCACATAATCCCAATGTAGATTATATTCCCTTCGAAGAGATGAAGACGAGGATCTTAAAAATAGTGGATGGTTACAATGGAATCCCATTCACCATCCAGCGTCTATGTGAACTCCTTACAGACCCCAAGCGCAACTATACAGGAACAGAGAAGTTTCTCATGGGTTTAGAGAAGAATGTAATGGTGGTCAGCTGTGTGTACCCCACATCAGAGAAAAATGGGGCATCCAGTGTAAACAGAATGAATGGAGTGATGTTTCCTGGTAACTCTTCTCTATATTCAGACAGtcGAAATGTAAATGGTCCAGACACACCAAAACCGCTCACCAGACCAAAATTGTCATTGTCGGCTTCACTTTCCACCAACGGGCTGCCTGACTGTGCAGTCAGTAAAGAGCCAGAGCCAACCACAGAAGAGGTGGAGGAGCACCGTATCGGTGATTCCTCACCATCAGAGGGTGAAATTACACCAAACAGTGGGATAAAGAACAAGCAccccgaggaggaggaggattcTGATGCTGGTAAACATGAGGTCAAGAGGCTcaagtttgatgaaaaagaggaggatgaaacagaaagtgaagaaaacAAGTCGTCTTGTTGTAAAGAGTCAGAGAGCTCGTCGGAAGAACCAGAGTCTTCAGAAGAACCATGTGGTCAAGAGTACAAAAGTGGAACATCTAGTGACACACCTGCTATTTCAGAGGATCATGAGCCCAGCAGCACACAGGCAGAACCTTCTGAAAGGGAAGAAAACTCATCTGAGAGGGGGGATGTCCACAGTCTGGAGAAGGACAGCACTGTGGGTCACCCTGAGCAGCCTGCTCCATCAGAGAAGGGTACAAGCTTTGAGCAGGAACatggggagagcagcagcagcagcagcagtagtagcagcagtagcagttgTAGTGATGGAGAAGGCCTAGCCAGCGAAAAGCAGGTCCCCTCTTCTAGTAGTTCACCTGACTTGTCAACAGAGGGCAAAGCTGACAGTTCAAACGGCGCAAAGACTGCAATAGAGCCTGGGGAACATGACTAAATTGAAACCCAGCTGACTTATTTTTACACTGTATGATACCACACCAAGGGGTATATCTGTAGCACTGTGGACCTGTGGACCAGGAGCAATGTGAACCTTGAGATTCTACACAGAGGGATCTTTTTGTCTGCTTCAATTTCAAATACTCAAGTCCACACATCACCTGGTCTTTAAACTGGAAGGACATGATTTAAAGATTATGGAGACTCTGCTTTTTTTCACTGTTGACTAAACAATTTtctaatccttttttttttcttttctttttttctgatttttatATAAGCGTTATAATTTAACCCTGATAACTGATGTATTCAGTGATTTCATTATTCTTAAGTCATTTGTCAAGCATTTCCAAAATGATATATTTGACAGTTTGAGTTGTTTTGGCCTATAGTATAGTTGTTTTGACTATTTTTCTGATGAATATGTGTCTCGCCTGTGTTGAATCAGAACACATGCCATTAAGAATGTGAAGCGACACTTCACAAACATCTGTGCTTTTTCTGTTAAGCACACAGCATTCAAATGTATTTCTTATTAACATTATATTGCACTTGTTTTCTTGAAGAATGTGAACCATTTCAAAGTTTTGCTTTGTCACTGTATGAagacaatacaaacacacaatttGCCAGAAGTTAACCAGTTGGGTTTGATAGAATATTGGTTTTTGGCTTAAGGGAAGCCATTTCTGCATCAAAATCTGTTAACAGGACACAAGATAGTTTAACACTTGTTATACATTAGTTATACAAATGTCCCTTTTGATAGCTTGGATTTTTACAGTACGCATCTGTAAATCCGTTTTTGTAGACTTGTAATACATATCCACTGCCTTCGTAAAACTGATAATCGCTGGAAGTTGAATGCCTGAGCTTGTATCATAGTATTCATGGAAAGCAATAAATACTAAAAATGTAAA
>XM_039800920.1
CATGGATGTATTGGTATTAAGAGATTTTTATGAACGTGGACGCATCTTCCGCAAATACGTAATTTTAGACATGCGCACTCTTCACTGCCAACAGCTTTGTTGGGCTGCTGGTTGCTAGCTACATGCTACTGCTAACTAGCAAGTAAGATTTCCTGCCTGTGACTGGACACAGCTATGGACATCGACGCGTTATTGGAGGCGTTTCAAGATTTTGAGAAGAAAGGCAAGAAAGAGACCTGTCCGGAACTAGAGCAATTCCTGTGTCATGTTGCCAAGACGGGGCAGCCAATGATCTCGTGGTCACAGTTCAAAACATACTTTGTGTTTAAgttggaaaaagtcatggatGATTTCCACGCTTCAACACCAGAACAGAGAGCACCACATAATCCCAATGTAGATTATATTCCCTTCGAAGAGATGAAGACGAGGATCTTAAAAATAGTGGATGGTTACAATGGAATCCCATTCACCATCCAGCGTCTATGTGAACTCCTTACAGACCCCAAGCGCAACTATACAGGAACAGAGAAGTTTCTCATGGGTTTAGAGAAGAATGTAATGGTGGTCAGCTGTGTGTACCCCACATCAGAtcGAAATGTAAATGGTCCAGACACACCAAAACCGCTCACCAGACCAAAATTGTCATTGTCGGCTTCACTTTCCACCAACGGGCTGCCTGACTGTGCAGTCAGTAAAGAGCCAGAGCCAACCACAGAAGAGGTGGAGGAGCACCGTATCGGTGATTCCTCACCATCAGAGGGTGAAATTACACCAAACAGTGGGATAAAGAACAAGCAccccgaggaggaggaggattcTGATGCTGGTAAACATGAGGTCAAGAGGCTcaagtttgatgaaaaagaggaggatgaaacagaaagtgaagaaaacAAGTCGTCTTGTTGTAAAGAGTCAGAGAGCTCGTCGGAAGAACCAGAGTCTTCAGAAGAACCATGTGGTCAAGAGTACAAAAGTGGAACATCTAGTGACACACCTGCTATTTCAGAGGATCATGAGCCCAGCAGCACACAGGCAGAACCTTCTGAAAGGGAAGAAAACTCATCTGAGAGGGGGGATGTCCACAGTCTGGAGAAGGACAGCACTGTGGGTCACCCTGAGCAGCCTGCTCCATCAGAGAAGGGTACAAGCTTTGAGCAGGAACatggggagagcagcagcagcagcagcagtagtagcagcagtagcagttgTAGTGATGGAGAAGGCCTAGCCAGCGAAAAGCAGGTCCCCTCTTCTAGTAGTTCACCTGACTTGTCAACAGAGGGCAAAGCTGACAGTTCAAACGGCGCAAAGACTGCAATAGAGCCTGGGGAACATGACTAAATTGAAACCCAGCTGACTTATTTTTACACTGTATGATACCACACCAAGGGGTATATCTGTAGCACTGTGGACCTGTGGACCAGGAGCAATGTGAACCTTGAGATTCTACACAGAGGGATCTTTTTGTCTGCTTCAATTTCAAATACTCAAGTCCACACATCACCTGGTCTTTAAACTGGAAGGACATGATTTAAAGATTATGGAGACTCTGCTTTTTTTCACTGTTGACTAAACAATTTtctaatccttttttttttcttttctttttttctgatttttatATAAGCGTTATAATTTAACCCTGATAACTGATGTATTCAGTGATTTCATTATTCTTAAGTCATTTGTCAAGCATTTCCAAAATGATATATTTGACAGTTTGAGTTGTTTTGGCCTATAGTATAGTTGTTTTGACTATTTTTCTGATGAATATGTGTCTCGCCTGTGTTGAATCAGAACACATGCCATTAAGAATGTGAAGCGACACTTCACAAACATCTGTGCTTTTTCTGTTAAGCACACAGCATTCAAATGTATTTCTTATTAACATTATATTGCACTTGTTTTCTTGAAGAATGTGAACCATTTCAAAGTTTTGCTTTGTCACTGTATGAagacaatacaaacacacaatttGCCAGAAGTTAACCAGTTGGGTTTGATAGAATATTGGTTTTTGGCTTAAGGGAAGCCATTTCTGCATCAAAATCTGTTAACAGGACACAAGATAGTTTAACACTTGTTATACATTAGTTATACAAATGTCCCTTTTGATAGCTTGGATTTTTACAGTACGCATCTGTAAATCCGTTTTTGTAGACTTGTAATACATATCCACTGCCTTCGTAAAACTGATAATCGCTGGAAGTTGAATGCCTGAGCTTGTATCATAGTATTCATGGAAAGCAATAAATACTAAAAATGTAAA

Function

symbol description
ppp4r2 Enables protein phosphatase regulator activity and protein-macromolecule adaptor activity. Involved in regulation of double-strand break repair via homologous recombination. Located in nucleoplasm. Part of protein phosphatase 4 complex.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X1

GO: NA

KEGG:

id description
K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800919.1 True 2353 mRNA 0.42 9 13642629 13649896
XM_039800920.1 False 2278 mRNA 0.42 8 13642629 13649896

Neighbor

gene id symbol gene type direction distance location
LOC120559547 mitf coding upstream 37194 13564625 ~ 13605435 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 111141 13527308 ~ 13531488 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding upstream 143187 13474266 ~ 13499442 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding upstream 190722 13448308 ~ 13451907 (+)
pm20d1.2 pm20d1 coding upstream 350317 13284381 ~ 13292312 (+)
guca1b guca1b coding downstream 2472 13652368 ~ 13654660 (+)
oard1 oard1,LOC106909399 coding downstream 5657 13655553 ~ 13657376 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 495331 14145227 ~ 14185140 (+)
LOC120558842 anks1a coding downstream 581239 14231135 ~ 14305611 (+)
LOC120559736 NA coding downstream 658066 14307962 ~ 14317786 (+)
G49562 NA non-coding upstream 755 13616877 ~ 13641874 (+)
G49572 NA non-coding upstream 3536 13636866 ~ 13639093 (+)
G49508 NA non-coding upstream 195894 13445139 ~ 13446735 (+)
G49502 NA non-coding upstream 209412 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 264220 13365731 ~ 13378409 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 75192 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 99662 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 108691 13758587 ~ 13992115 (+)
G49598 NA non-coding downstream 114663 13764559 ~ 13766112 (+)
LOC120558704 NA non-coding downstream 129371 13779267 ~ 13798652 (+)
G49538 lmod3 other upstream 107707 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 756405 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 798195 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 984321 12652384 ~ 12658308 (+)
G49209 NA other upstream 1184190 12452535 ~ 12458439 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 8836 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 463119 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 555701 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 914971 14564867 ~ 14567456 (+)
G49776 NA other downstream 924646 14574542 ~ 14577572 (+)

Expression


Co-expression Network