LOC120559303 (mmp19,LOC101481755,LOC102777654)


Basic Information

Item Value
gene id LOC120559303
gene name mmp19,LOC101481755,LOC102777654
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11813252 ~ 11816554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800930.1
AATGGGAAAAGACCCAAACTGGAAAATGGAATATAGGCTGGGCTTAATGTTGCTTCTTGTTCTGCTGACACCAGCTTCATCCGTTGCCCTGAGCAGAGAAGAATTTTCAGAAGCGGTGGTGTATTTAAGGCAGTATGACTATCTGCACATCCCACTGGACAGTAAAGGCCAAAACCATCCACCTGAGGAGATAGCGGAAGCCCTAAGAATCTTTCAGAAAGTGACAAACCTGCAAATATCAGGAAAACTAGATTCAGCCACTCTGGCGATGATGAACAAACCTCGATGTGGCATACAGGACTCTTTCAATAACAAATCTCTTAAATATCGAGTCCTGGGTTACTGGCGCAAGAAGATGCTGACCTACCGCATCTATAATTACACCCCTGACTTGGGTCAGGGAAAGACCCGTTTGGCAATCCAGAGCGCTTTCAAGTACTGGAGCGATGTGTCACCTTTAAAGTTCAAGGAGCTGCAGCAAGGAAGAGCAGACATCAAAATCTCCTTTCACAGAAAAGACAAGACGTGTCCAGTTCCCTTCGACGGACGAGGTCATGTTTTGGCCCACGCTGATGCCCCCGAGTCAGGCATTGTGCATTTCGACAACGATGAAGTGTGGACAGAGGGGAAGAGCTCCGGCTCCAACCTGAGGATTGTTGCAGCCCACGAGATTGGCCACGCTCTCGGCCTGGGCCACTCACAACACTACAGCGCACTTATGGGACCTGTTTACAACGGATACCGCTCCGACTTCAAACTACATCCAGACGACATCCAAGGGATCCAGGCTTTATACGGAAAGCCAGAGAAGGCTCCTCCATCCAGAAATCCAAGTCATTTATTGCCAGGAGTTATTCCAGATCCTTGCAAGGCCTCTGTGGATGCAGTAATGTTGGGTCCTTTGCGTAAGACATATGTCTTCAGTGGTCAGTATGTGTGGACATTGTCCAGCTCTGGCTACAACACTCCCATCTTAATCTCTGCACTGTGGAAGGAACTGCCAGGGAGCCTCAATGCAGCTGTTCACTCTCAGCGGACCAGCAAGTCCTATTTTCTGAAAGAAGACAAAGTATGGagatacactggctttaaactTGACCAAGGCTTCCCCAAACGCTTGGCCAATATCCCGGCTGATATTGACTCAGCCTTGTACTTCAATAAGAACAAACAACTTGTCTTTTTCAAAgGCTCTGGATACTGGCAGTGGGATGAAATAGGTACGACAGACTTCAGTTCATATCCCAAACCTATTGGAAAACTCTTCCACGGGGCCCCTAGCAACCCTAATGCTGCAATCACATGGACAAACGGACATATATACTTATTTAAAGGCACCCAGTACTGGCGTGTAAACCAGAACCACCGAGCAGTGGAGAAGGCCTACCCTCTGAACACGGCCACGCACTGGATGCAGTGTGACGACTGAGCCACCAGAGGCCACCGGGGATTCAACACAA

Function

symbol description
mmp19 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

NR:

description
matrix metalloproteinase-19

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800930.1 True 1460 mRNA 0.49 9 11813252 11816554

Neighbor

gene id symbol gene type direction distance location
pym1 pym1,LOC102777374 coding upstream 1441 11807712 ~ 11811811 (+)
pan2 pan2 coding upstream 35417 11760824 ~ 11777835 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding upstream 67510 11737286 ~ 11745742 (+)
letmd1 NA coding upstream 100565 11706243 ~ 11712687 (+)
nr4a1 nr4a1,LOC100709939 coding upstream 121979 11686287 ~ 11691273 (+)
cebpb cebpb,LOC107391299 coding downstream 152985 11969539 ~ 11971359 (+)
klhl12 klhl12,LOC102781379 coding downstream 164230 11980784 ~ 12009924 (+)
LOC120559247 NA coding downstream 192153 12008707 ~ 12017567 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding downstream 201110 12017664 ~ 12023947 (+)
kdm5bb LOC103354421 coding downstream 226541 12043095 ~ 12063263 (+)
G48876 NA non-coding upstream 60015 11752998 ~ 11753237 (+)
LOC120559500 NA non-coding upstream 92335 11712804 ~ 11720917 (+)
G48854 NA non-coding upstream 113296 11699026 ~ 11699956 (+)
G48860 NA non-coding upstream 209268 11603719 ~ 11603984 (+)
G48859 NA non-coding upstream 209550 11603407 ~ 11603702 (+)
LOC120559701 slc13a3,LOC103399527 non-coding downstream 43548 11860102 ~ 11862940 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding downstream 65409 11881963 ~ 11903479 (+)
G48986 NA non-coding downstream 91225 11907779 ~ 11907872 (+)
G48978 NA non-coding downstream 136620 11953174 ~ 11982735 (+)
G49086 NA non-coding downstream 325588 12142142 ~ 12142527 (+)
G48765 NA other upstream 497260 11314662 ~ 11315992 (+)
G48752 NA other upstream 639598 11172595 ~ 11173654 (+)
G48640 NA other upstream 1062824 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1662001 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1888171 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 267898 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 276225 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 365655 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 407013 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 429091 12245645 ~ 12254060 (+)

Expression


Co-expression Network