scube3 (scube3)


Basic Information

Item Value
gene id scube3
gene name scube3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14325802 ~ 14402540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801020.1
GAGGAGTCCGGAGCGCAGCGCAGCGCAGCGGACGCTTCGTCTTCTCTCCTCCCCCTTTAGACCCCGCCGCTCCGCTCcatctctccgtctctcttttcctctctctctctctcgctctctctctctctctgtctctctctctccctttcttaaATTGACATTGGTCTGGCTCGAAACATGATAACAGAAAAGACTTCCTCCGCTCCGCGTTGTCGGACTGTCCTCAACCCCGATCACTTGAAACTCAAATAAGCAGGCGTGAAGAGGAAAAAGGGATCGCACAGTATCCTATCAGCAGCTGCTCAGAGGGAATAACAAGATACCTTtataccacacacacgcacacacacacgcacacacacacacacacacacacacacatacacacagacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcggatGTGCTCTTGCGCATCGTAGATCTTAGAAAGTGCTCGTGTTGAACTATAGTGAAAGTAACATGTATATGCACGCTTTGATACGCGCAAGCCTTGGATTTGTAGGTTTCTGCTTGGTCGCCTTTGTCCAACAGTCAGCTTCAGGAAGTAAGACCACTCAAGATGTGGACGAGTGTGCAGAGGCGCTTGACAACTGCAGCATCGATGCCATCTGCCAGAACACCCTGAAGTCATACAAATGTATCTGCAAGTCAGGCTATAAAGGGGATGGCAAACATTGTGAAGATGTTGACGAGTGTGCAACTGAATACAACGGTGGCTGCGTCCATGAGTGCATCAACATCCCAGGAAATTACAGGTGCACATGCTATGATGGCTTCCGCTTGGCACATGATGGGCACAATTGTCTAGATGTGGATGAGTGCTCAGAAGGCAACGGCGGATGTCAGCAGATTTGTGTCAACATGATGGGCAGCTATGAGTGCCGCTGCAGAGAAGGATTCCTCCTGAGTGACAACCAGCATACCTGTATCCAAAGACCTAAAGTGCAATCGGAAGGCTCAAAGGAAGGACCCACCTGCATGGACAAGAATCACGGCTGTGCACACATCTGTAGGGAAGCACAGAAGGGTGGCATCTCCTGTGAGTGTCGACCTGGATTCCAGCTCATGGATAACAAGGACTGCAAACTGACGTGTAACTACGGTAATGGGGGTTGCCAGCACATCTGCGAGGAGACAGACCACGGCCCCAAGTGTTCGTGCCACATGAAGTTCGTCCTGCACAGCGATGGAAAGACTTGTGTAGGGGAGAGGAGTGTCCAGTCCCAGGCAGCCCCACAGCTGTTCCCCAATGAGACCTGTGCAGTGAACAATGGCGGCTGTGATAGCACATGTCATGATTCAGTGACAGGAGTCCGCTGCAGCTGTCCTGTTGGCTTCACTCTGCAGCCAGACCGCAAGACCTGCAAAGACATTGATGAGTGCCGTCTTAACAATGGGGGGTGTGACCATGTGTGTCGAAACACAGTGGGAAGCTTTGAGTGCAGCTGCAAGAAAGGCTACAAGCTGCTGACCAATGAGAGAACTTGTCAAGATATTGATGAGTGCTCTTTTGACCGCGCCTGTGACCACTTCTGTATCAACTCTGCCGGGAGTTTCCAGTGCCTCTGTCATAAAGGCTACATCCTCTACGGCCTGGCACACTGTGGAGATATTGATGAATGCAGTATAAACCGCGGAGGTTGTAAATACGGCTGCATCAACCGTCCAGGGAGCTACGAGTGTACCTGTCCACCCGGGTACAAGCTCCACTGGAACAGGAAAGACTGTGTTGagCTGGTGAAATGTCCTCTTGGACTGATGGCACCAAAGGCTACTCTGGCCTGTAGCAAGACGGGCAAAAAAGAGAGCTGCTCTCTTACCTGTGCCTCTAAGGCTCACTATCTGGCAGAGTCTGACAACAGCTACTCAGTCAGTTGTGGTATCCCCGTCCTCAGAGGGAAGTCCCCTGCGAGGCTCAActccagcagcagtcagagcTGCATAGAGACTTTGGCCCCTCCAGTGAAGCAGACGGCTTCTTTCAAGATTAAAAACGCCAAATGTCACCTGCATCCGAGGCTGACCGGCAGGACGGAGGACAGAGGACGGACACTTGGACCAGGAGGGGGGCAGCCCTGCAGCAACTGCTTGGTGACATTTGTCAACCTCAAATGCGACTCCTCTAAGAAAGCTAAAGGTCGACGTGCTCGCAACCCCTCTAACAAGGAGGTAACACGCATTACTTTGGAGCTGGAAGCTGAGGTCAAACCTGGAGACACTACGGGGAGTTGCAATCTCAGCTGCCTGAGGCAGCGTATGGAGAAACAGGTTAAGACGTATATCAAGGCTCTGAAGAAGTCCATCAACCAGGAGCGCTTCCTGATCCGAGTTGCTGGTTTGGAATACGAGGTGGCCCAGAAACTTCCCCAGGCTGCTCCGAGTCAGGAGAACTGCGGGCCGGGCTGGGAGAGGGATAGTGGCCGATGTGTCAGATGCTTGTCGGGGTCTTACTACCATGGTGAGCAGGAGCGCTGCGTCCAGTGTCCACCCGGCACTTTTCAGGAAAAGGAGGGGCAGCTTGCCTGTGACCTCTGCCCCGGCAGTGACGGCCACGGGCCTGTCGGGGCACGGAACATCTCCTCTTGTGCAGGCCAGTGTCCAACGGGGTCCTTCTCCAGTGATGGTTTCAAACCGTGTCAGGCGTGCCCTCATGGCTCCTACCAACCAGATTTGGGACGGACCCTGTGCTTCCCCTGTGGGGGAGGACTGGGCACCAAACGGGAAGGTGCCAGCTCCTTCCATGATTGTGAAGTTAAAGTCCAGTGTTCTCCAGGTCATTACTACAACACCACAGTACACCGGTGTATCCGCTGCCCAGTGGGGACGTATCAGACAGAGTTCAGACAGAACTACTGCATTTCCTGCCCTGGGAACACCACCACTGATTTTGATGGTGCCACAAGTGTTTCGCAGTGCAAGAACAGGCAATGTGGTGGCGAGATGGGCGAATTCATGGGTTACATTGAGTCGCCCAACTATCCCGGTAATTACCCTGCTAATGTGGAGTGTATTTGGAACATCAACCCGCCCAGCAAGCGCAAGATCCTAATTGTGGTGCCGGAGATTTTCCTGCCCTCGGAGGACGAGTGTGGAGATGTGCTGGTTATGAGGAAGAACTGGTCAGCTACATCCATCACCACCTACGAGACATGTCAGACGTACGAGCGGCCCATTGCCTTCACAGCTCGCTCCAGACGTCTCTGGATTAACTTCAAGTCCAACGAGGCCAACAGCGCCAGAGGCTTTCAGATCCCCTATGTTACTTATGATGAGGACTATGAACAGCTCGTAGAGGACATAGTGCGAGATGGAAGACTCTATGCCTCAGAAAACCATCAAGAAATCCTCAAGGATAAAAAACTGATTAAGACTCTTTTTGACGTGCTGGCTCACCCAAACAACTACTTTAAGTACACCACTCGGGAGTCCAACGAGATGCTTCCCCGCTCCTTCATACGCCTCATAAGCAGCAAAGTCTCAGCTTTTCTGCGACCATACAAGTAAAGCTCACACAGCCGCCGAAGTACCAGATCGTGATCTCCGACATCCCCCCCCTTCACCTTACAGGCCACATCCCGCAACTCTCACAGGACTTAAAACATACTAGTGTGTTTACCTTCTTATTTTCCATAGGCTTTAATAAACACAATGCAGACCTGAGGAATACTGAAAGtttgtgttttagttttttttgtcagtttccATTTAGCACAGGCTTGTAATCCCGAGCTCAAGCATTTAGCAGGGATGTAGAATATGTGAGTGGGTTTGGTTTCCGTTGTGTAATGAAACCACCAAAAATAGAAACGCAAATTTCAGACAGTAGGAGTGGCATGTGTGCGCGGTTAGAGCTTGTTATTGTTTTTGCTTAAATGAGCAGTCAGTTTTCAACTCCTACAATTAAGTATGACTAAGTGTTGTGTAACCCTAGTTCCATCTTCAGTGTCTGTGCTGTCCTCAAGGAGAAGCGGTTAAAATTCATATCACAGCTGCATTTCAGGTCATTCAAAGCTTTACTTCATTTGAGCTCTTAGAGCAGTTTCCAATGGTTTTACTGTTAAAACAGTTAATCTGTTTTGTTACGCCTCTCTAAACTGTAGCAGTGTTTTCCAACCTTCAGAATTTCTGTAACATTGATTTCCAACcttcagatcattttttttttaaagtcaactTAAAGCAAATACAAACAGGTCGTTACCATTCCAGGAACATAGTGGACATTTGGGAGATTAATAATTTGAGAGAGCCACAGAAATAAGAATGTGATGTCTAGTGGAACATGTCTCCGAGAGAGAGGAATGTCTTTGAAGGACATTGTTTGCTGCTTCTTTTAAAAGGTCACTTTAATTCTTCAATCTTCATGTTGTCTTGCTGATGTACTCCACACACCAATAGTCTCTAGGTTAAAAACAAGGAAGCTCCACAGCTACAATAGTTTAGATCTTACATACAGGCAATGTGACATTATCAACTTACTGTATGTGGACTAccagttgtgtttttatttcaatcTTGTAAATAATGAAAATTAGACGAGGGTTGAATTCTTTAATCCTAAATTTCTCAAGCAGGCTCCCTAAAAATCACTTTCCGCCCCACCCGTCTCAAATCCAAAGACACCAAGTACCCCCTTTcaacacccctcacattttgtTCTGTCCCAATAATGACCGCACTTCCAAAGACTGCCATAAAAAAGGCCGGGTCACTGTTTTGTGCAGCCTATCCTTTTAGTACAAGTGCAatgaatggaaaaaaa
>XM_039801021.1
AGGAGTCCGGAGCGCAGCGCAGCGCAGCGGACGCTTCGTCTTCTCTCCTCCCCCTTTAGACCCCGCCGCTCCGCTCcatctctccgtctctcttttcctctctctctctctcgctctctctctctctctgtctctctctctccctttcttaaATTGACATTGGTCTGGCTCGAAACATGATAACAGAAAAGACTTCCTCCGCTCCGCGTTGTCGGACTGTCCTCAACCCCGATCACTTGAAACTCAAATAAGCAGGCGTGAAGAGGAAAAAGGGATCGCACAGTATCCTATCAGCAGCTGCTCAGAGGGAATAACAAGATACCTTtataccacacacacgcacacacacacgcacacacacacacacacacacacacacatacacacagacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcggatGTGCTCTTGCGCATCGTAGATCTTAGAAAGTGCTCGTGTTGAACTATAGTGAAAGTAACATGTATATGCACGCTTTGATACGCGCAAGCCTTGGATTTGTAGGTTTCTGCTTGGTCGCCTTTGTCCAACAGTCAGCTTCAGGAAGTAAGACCACTCAAGATGTGGACGAGTGTGCAGAGGCGCTTGACAACTGCAGCATCGATGCCATCTGCCAGAACACCCTGAAGTCATACAAATGTATCTGCAAGTCAGGCTATAAAGGGGATGGCAAACATTGTGAAGATGTTGACGAGTGTGCAACTGAATACAACGGTGGCTGCGTCCATGAGTGCATCAACATCCCAGGAAATTACAGGTGCACATGCTATGATGGCTTCCGCTTGGCACATGATGGGCACAATTGTCTAGATGTGGATGAGTGCTCAGAAGGCAACGGCGGATGTCAGCAGATTTGTGTCAACATGATGGGCAGCTATGAGTGCCGCTGCAGAGAAGGATTCCTCCTGAGTGACAACCAGCATACCTGTATCCAAAGACCTAAAGTGCAATCGGAAGGCTCAAAGGAAGGACCCACCTGCATGGACAAGAATCACGGCTGTGCACACATCTGTAGGGAAGCACAGAAGGGTGGCATCTCCTGTGAGTGTCGACCTGGATTCCAGCTCATGGATAACAAGGACTGCAAACTGACGTGTAACTACGGTAATGGGGGTTGCCAGCACATCTGCGAGGAGACAGACCACGGCCCCAAGTGTTCGTGCCACATGAAGTTCGTCCTGCACAGCGATGGAAAGACTTGTGTAGAGACCTGTGCAGTGAACAATGGCGGCTGTGATAGCACATGTCATGATTCAGTGACAGGAGTCCGCTGCAGCTGTCCTGTTGGCTTCACTCTGCAGCCAGACCGCAAGACCTGCAAAGACATTGATGAGTGCCGTCTTAACAATGGGGGGTGTGACCATGTGTGTCGAAACACAGTGGGAAGCTTTGAGTGCAGCTGCAAGAAAGGCTACAAGCTGCTGACCAATGAGAGAACTTGTCAAGATATTGATGAGTGCTCTTTTGACCGCGCCTGTGACCACTTCTGTATCAACTCTGCCGGGAGTTTCCAGTGCCTCTGTCATAAAGGCTACATCCTCTACGGCCTGGCACACTGTGGAGATATTGATGAATGCAGTATAAACCGCGGAGGTTGTAAATACGGCTGCATCAACCGTCCAGGGAGCTACGAGTGTACCTGTCCACCCGGGTACAAGCTCCACTGGAACAGGAAAGACTGTGTTGagCTGGTGAAATGTCCTCTTGGACTGATGGCACCAAAGGCTACTCTGGCCTGTAGCAAGACGGGCAAAAAAGAGAGCTGCTCTCTTACCTGTGCCTCTAAGGCTCACTATCTGGCAGAGTCTGACAACAGCTACTCAGTCAGTTGTGGTATCCCCGTCCTCAGAGGGAAGTCCCCTGCGAGGCTCAActccagcagcagtcagagcTGCATAGAGACTTTGGCCCCTCCAGTGAAGCAGACGGCTTCTTTCAAGATTAAAAACGCCAAATGTCACCTGCATCCGAGGCTGACCGGCAGGACGGAGGACAGAGGACGGACACTTGGACCAGGAGGGGGGCAGCCCTGCAGCAACTGCTTGGTGACATTTGTCAACCTCAAATGCGACTCCTCTAAGAAAGCTAAAGGTCGACGTGCTCGCAACCCCTCTAACAAGGAGGTAACACGCATTACTTTGGAGCTGGAAGCTGAGGTCAAACCTGGAGACACTACGGGGAGTTGCAATCTCAGCTGCCTGAGGCAGCGTATGGAGAAACAGGTTAAGACGTATATCAAGGCTCTGAAGAAGTCCATCAACCAGGAGCGCTTCCTGATCCGAGTTGCTGGTTTGGAATACGAGGTGGCCCAGAAACTTCCCCAGGCTGCTCCGAGTCAGGAGAACTGCGGGCCGGGCTGGGAGAGGGATAGTGGCCGATGTGTCAGATGCTTGTCGGGGTCTTACTACCATGGTGAGCAGGAGCGCTGCGTCCAGTGTCCACCCGGCACTTTTCAGGAAAAGGAGGGGCAGCTTGCCTGTGACCTCTGCCCCGGCAGTGACGGCCACGGGCCTGTCGGGGCACGGAACATCTCCTCTTGTGCAGGCCAGTGTCCAACGGGGTCCTTCTCCAGTGATGGTTTCAAACCGTGTCAGGCGTGCCCTCATGGCTCCTACCAACCAGATTTGGGACGGACCCTGTGCTTCCCCTGTGGGGGAGGACTGGGCACCAAACGGGAAGGTGCCAGCTCCTTCCATGATTGTGAAGTTAAAGTCCAGTGTTCTCCAGGTCATTACTACAACACCACAGTACACCGGTGTATCCGCTGCCCAGTGGGGACGTATCAGACAGAGTTCAGACAGAACTACTGCATTTCCTGCCCTGGGAACACCACCACTGATTTTGATGGTGCCACAAGTGTTTCGCAGTGCAAGAACAGGCAATGTGGTGGCGAGATGGGCGAATTCATGGGTTACATTGAGTCGCCCAACTATCCCGGTAATTACCCTGCTAATGTGGAGTGTATTTGGAACATCAACCCGCCCAGCAAGCGCAAGATCCTAATTGTGGTGCCGGAGATTTTCCTGCCCTCGGAGGACGAGTGTGGAGATGTGCTGGTTATGAGGAAGAACTGGTCAGCTACATCCATCACCACCTACGAGACATGTCAGACGTACGAGCGGCCCATTGCCTTCACAGCTCGCTCCAGACGTCTCTGGATTAACTTCAAGTCCAACGAGGCCAACAGCGCCAGAGGCTTTCAGATCCCCTATGTTACTTATGATGAGGACTATGAACAGCTCGTAGAGGACATAGTGCGAGATGGAAGACTCTATGCCTCAGAAAACCATCAAGAAATCCTCAAGGATAAAAAACTGATTAAGACTCTTTTTGACGTGCTGGCTCACCCAAACAACTACTTTAAGTACACCACTCGGGAGTCCAACGAGATGCTTCCCCGCTCCTTCATACGCCTCATAAGCAGCAAAGTCTCAGCTTTTCTGCGACCATACAAGTAAAGCTCACACAGCCGCCGAAGTACCAGATCGTGATCTCCGACATCCCCCCCCTTCACCTTACAGGCCACATCCCGCAACTCTCACAGGACTTAAAACATACTAGTGTGTTTACCTTCTTATTTTCCATAGGCTTTAATAAACACAATGCAGACCTGAGGAATACTGAAAGtttgtgttttagttttttttgtcagtttccATTTAGCACAGGCTTGTAATCCCGAGCTCAAGCATTTAGCAGGGATGTAGAATATGTGAGTGGGTTTGGTTTCCGTTGTGTAATGAAACCACCAAAAATAGAAACGCAAATTTCAGACAGTAGGAGTGGCATGTGTGCGCGGTTAGAGCTTGTTATTGTTTTTGCTTAAATGAGCAGTCAGTTTTCAACTCCTACAATTAAGTATGACTAAGTGTTGTGTAACCCTAGTTCCATCTTCAGTGTCTGTGCTGTCCTCAAGGAGAAGCGGTTAAAATTCATATCACAGCTGCATTTCAGGTCATTCAAAGCTTTACTTCATTTGAGCTCTTAGAGCAGTTTCCAATGGTTTTACTGTTAAAACAGTTAATCTGTTTTGTTACGCCTCTCTAAACTGTAGCAGTGTTTTCCAACCTTCAGAATTTCTGTAACATTGATTTCCAACcttcagatcattttttttttaaagtcaactTAAAGCAAATACAAACAGGTCGTTACCATTCCAGGAACATAGTGGACATTTGGGAGATTAATAATTTGAGAGAGCCACAGAAATAAGAATGTGATGTCTAGTGGAACATGTCTCCGAGAGAGAGGAATGTCTTTGAAGGACATTGTTTGCTGCTTCTTTTAAAAGGTCACTTTAATTCTTCAATCTTCATGTTGTCTTGCTGATGTACTCCACACACCAATAGTCTCTAGGTTAAAAACAAGGAAGCTCCACAGCTACAATAGTTTAGATCTTACATACAGGCAATGTGACATTATCAACTTACTGTATGTGGACTAccagttgtgtttttatttcaatcTTGTAAATAATGAAAATTAGACGAGGGTTGAATTCTTTAATCCTAAATTTCTCAAGCAGGCTCCCTAAAAATCACTTTCCGCCCCACCCGTCTCAAATCCAAAGACACCAAGTACCCCCTTTcaacacccctcacattttgtTCTGTCCCAATAATGACCGCACTTCCAAAGACTGCCATAAAAAAGGCCGGGTCACTGTTTTGTGCAGCCTATCCTTTTAGTACAAGTGCAatgaatggaaaaaaa

Function

symbol description
scube3 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

NR:

description
PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 3 isoform X1

GO: NA

KEGG:

id description
K24468 SCUBE1_3; signal peptide, CUB and EGF-like domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801020.1 True 4826 mRNA 0.49 23 14325802 14402540
XM_039801021.1 False 4777 mRNA 0.49 22 14325803 14402540

Neighbor

gene id symbol gene type direction distance location
LOC120559736 NA coding upstream 8016 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 20191 14231135 ~ 14305611 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding upstream 140662 14145227 ~ 14185140 (+)
oard1 oard1,LOC106909399 coding upstream 668426 13655553 ~ 13657376 (+)
guca1b guca1b coding upstream 671142 13652368 ~ 13654660 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding downstream 128614 14531154 ~ 14539601 (+)
aaas aaas coding downstream 149693 14552233 ~ 14561394 (+)
LOC120559201 gls2,LOC104942574 coding downstream 197737 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 217608 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 273732 14676272 ~ 14684010 (+)
G49665 NA non-coding upstream 95408 14229645 ~ 14230394 (+)
G49660 NA non-coding upstream 96710 14228370 ~ 14229092 (+)
G49663 NA non-coding upstream 102079 14223295 ~ 14223723 (+)
G49619 NA non-coding upstream 201266 14123652 ~ 14124536 (+)
LOC120558704 NA non-coding upstream 527150 13779267 ~ 13798652 (+)
G49718 NA non-coding downstream 166 14402706 ~ 14403546 (+)
G49717 NA non-coding downstream 1355 14403895 ~ 14409162 (+)
G49720 NA non-coding downstream 8827 14411367 ~ 14417663 (+)
G49743 NA non-coding downstream 116234 14518774 ~ 14525189 (+)
G49761 NA non-coding downstream 142855 14545395 ~ 14546722 (+)
uhrf1bp1 uhrf1bp1 other upstream 97914 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 204780 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 600812 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 790880 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 1439578 12860721 ~ 12886224 (+)
G49773 LOC103358639 other downstream 162327 14564867 ~ 14567456 (+)
G49776 NA other downstream 172002 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1369677 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1373677 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1483450 15885990 ~ 15969331 (+)

Expression


Co-expression Network