wnt1 (wnt1)


Basic Information

Item Value
gene id wnt1
gene name wnt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21263048 ~ 21268246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801064.1
ATACATGTCACATAATGAAACATTCACCCATGAACCAACATGGAGAGGTTTGGGGACAGTGAAGCCTGCTTCTAGTCTGGGGTTAGATGGAGATGCCGCAAAGTGGCTCAAGCTGTGATTACACTGGGCTACATGTGCGTCGAGGGAGGTCTGCAGGCCAGATGTTTGGAATGTTTTTTATTCTTACTCGTCCCCTCTTTTCCTGGTTTATCATACATCAAACTTCTGATTGGAGGCCGTATTTCAGCTCTCCGGCGCTCGAAAAAACATTTAAGTAGCCCAGCAGGCAGTGTGAGTTATATGACAACTATGATCTTATTTCGTCTTGCTACGTGCAAGTTACGAGGTGCGTGTGCGCGCGGGTCTTGAGCAATTGAGACTGGTGATAACAGTTTTGTTTATTGGGTCTGATCTAAATGATCTAAATATAGGCACTTACGAGACCCTCATAAAAGGTTTTAATTAATAGTTGGTGTCATAATGTAAAACGATGTTTTTAAAAGGGATTAGTGTAAAAAGTGAACAGAAATGTCCTTAGTCACTGCACATTTTGGGAGCGCTTTtggagaaaggaggaggagatgcGGTTAGGGTGTAGGCTAATCCAACCACCGGGTAAAAAAAGGGCAGTTTTAGATGGCTCATATTCCGCTGTAACTGTATTGCACCGTGACACCAGCTTTGAGCAGCAACGGAGCACCAAACCAGGCGCACCCACAGCATCTGTACCAACACATCACTGCTTCAGGGGCACTTCTTCTTTCTGCCAGACTGGATGGAAGAAAGCGCATGGCCAGTGGGAAAATACTCTCAGCCGCACACATTTGCAGGGAATCGATTATGTGATGACCGTGAGATTCCACAAGTAATATGCGCAACTCTTTGGATTGTCctattttttctcttcctttctttttttctgcccaGTTGTGTTTCCTTATTCATTGTGCGCCCTATGAAGAGCATTAACTATCCCTCCCTCCAATCCTATTGAAAAGGCTccgaaaaaaaacagagggagaTGAGAGCAGCAAATCCCTTTTTTATTCCCCTCGTAGCGCTCAATAAGAGAAGAATGTGTTGCCTATCAGTCACCGAGGGGATCAAGTCTTCGGGACTGTCCCACGCGTTCAATGCGCCGTGCAGAGCatcactgagagagacagagtgaagaggactgcagcagcagtagcatcCTGCCTGGACACTTCACATCATTTAGCAACCTGTCTCCACTCAAGATCCATTTAAGTCAATTAGGGCGGTCTGCTTCTCTCACCTTTCAAGTCCTCTTACCGGACTGTGGCGTGaCACGATGAGGAGTCTGGCGCTGCTGTTAGGGGTGAAAGCCGCCTGCATCCTGCTGGTGTCTTCGCTCTCAGGCACAGGGGCCGTCAACAACAGCGGCCGGTGGTGGGGAATTGTCAATGTGGCCTCCTCATCCAACCTCCTCACCAATTCCAAAAACGTGCAGTTGGTCCTGGACCCAAGCCTGGCCCTACTGAGTCGTCGCCAACGGCGGCTGATTCGGCAGAATCCTGGCATCTTGCACGCCATCGCCGCTGGGCTGCACACTGCCATAAAGGAGTGCAAGTGGCAGTTCCGCAACCGCCGCTGGAACTGCCCGACCACCCACAGCCCAGCAGTTTTTGGGAAAATTGTCAATCGTGGTTGCCGAGAGACAGCATTTGTATTTGCCATTACCAGTGCAGGGGTGACCCACGCTGTGGCTCGCTCCTGTTCAGAAGGGGCCATTGAGTCGTGCACATGCGATTACCGCCGCAGAGGTCCTGGAGGGCCAGACTGGCACTGGGGGGGCTGCAGTGACAATGTAGACTTTGGCCGGATGTTCAGCCGTGAGTTTGTGGACTCCAGCGAGAGGGGCAGAGATCTGCGCTACCTCACCAACCTACACAACAATGAGGCTGGCAGAATGACTGTGTCATCGGAGATGCGTCAAGAGTGTAAGTGCCATGGCATGTCAGGCTCCTGCACCGTGCGCACCTGTTGGATGCGCCTGCCCAGCTTCCGCACAGTGGGAGACTTCCTTAAGGACCGGTTTGATGGTGCATCCAGAGTTATCTATGCCAACAAGGGAAGCAACCGTGCCTCTCACAGAGCTGACCCCCGACATCTGGAGCCTGAAAACCCGGCACACAAACCCCCATCTGCCATGGACCTGGTCTATTTTGAGAAATCACCAAACTTCTGCTCCTACAATGGCAAAACGGGCACTTTGGGAACTTCTGGGAGAACATGCAACAGCTCTTCCCCAGGCCTGGATGGATGTGAGCTGCTCTGCTGTGGACGTGGGTTTAAGACCTGGACTGAGAGTGTGACTGAACGTTGCCACTGCACCTTCCACTGGTGCTGTCATGTCAGCTGCTTGAACTGCACCAGTACACGAACGTTACACCAGTGTCTATGATCACAGGTGGACACCAAGTGAATATTTAGGCATATATGAAAGGCAAAGaacttctta

Function

symbol description
wnt1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within brain development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; midbrain hindbrain boundary neural keel; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 15 and osteoporosis. Orthologous to human WNT1 (Wnt family member 1).

NR:

description
protein Wnt-1

GO:

id name namespace
GO:0035284 brain segmentation biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03209 WNT1; wingless-type MMTV integration site family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801064.1 True 2485 mRNA 0.51 5 21263048 21268246

Neighbor

gene id symbol gene type direction distance location
lrp1ab LOC103362052 coding upstream 96631 21071707 ~ 21166417 (+)
si:dkey-21c19.3 senp1,LOC102196255,LOC102311320 coding upstream 217080 21032895 ~ 21045968 (+)
LOC120558837 faim2,LOC102311007,LOC103362048,LOC102784507 coding upstream 231853 21025140 ~ 21031195 (+)
mfsd5 mfsd5,LOC102784782 coding upstream 239887 21020505 ~ 21023161 (+)
nr1d4a LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972 coding upstream 243756 21007551 ~ 21019292 (+)
lmbr1l lmbr1l coding downstream 26901 21295147 ~ 21308168 (+)
dhh dhh coding downstream 44306 21312552 ~ 21317922 (+)
kmt2d kmt2d coding downstream 55068 21323314 ~ 21359987 (+)
arhgef25a LOC102292298,LOC100705949,LOC101484609 coding downstream 148890 21417136 ~ 21473374 (+)
slc26a10 LOC103368469 coding downstream 230460 21498706 ~ 21504920 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding upstream 29519 21230270 ~ 21233529 (+)
G51625 NA non-coding upstream 40491 21220651 ~ 21222557 (+)
LOC120558354 NA non-coding upstream 483649 20772453 ~ 20779399 (+)
G51386 NA non-coding upstream 510703 20751595 ~ 20752345 (+)
LOC120558477 NA non-coding upstream 600495 20661297 ~ 20662553 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 9530 21277776 ~ 21288705 (+)
G51735 NA non-coding downstream 96361 21364607 ~ 21365558 (+)
G51736 acvr1b,LOC105897348 non-coding downstream 97375 21365621 ~ 21366055 (+)
G51737 acvr1b non-coding downstream 98055 21366301 ~ 21366577 (+)
G51738 LOC104956875,LOC101062677 non-coding downstream 98430 21366676 ~ 21367030 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 730479 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 1197313 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 1262610 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 1494484 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1799336 19456477 ~ 19463712 (+)
G51716 NA other downstream 21342 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 93044 21361290 ~ 21364430 (+)
G51804 NA other downstream 290644 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 448863 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 514971 21783217 ~ 21807914 (+)

Expression


Co-expression Network