vwa1 (LOC103364336,LOC104966039,LOC104936677)


Basic Information

Item Value
gene id vwa1
gene name LOC103364336,LOC104966039,LOC104936677
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30669576 ~ 30679373 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801441.1
GGCACGACTCCAGGAATGGAATTGTCAGTTGATGAAATCCCACAGCCTGGGGCAGTGATTCCCAAACCAGGGGGCAAATGCAGGGACCACACATGCGGCCTGGGAAGAGCTTCAGtgctgaaCTGCTGCGAGGGCGACGTCCTCTTCTTATTGGATTCCTCTGGAAGTGTGTCGGCCTATGAGCACTCCCGCATGCTCACCTTCCTGTCTGAGCTCCTCCTCCCCTTTTCGCTGGGAGAGGACCAGGTGAGGATAGGACTTCTGCAGGTGGGCACCCGACCACGCCTCGAGTTTGGCTTTGGCACCCATAGTACCCAGAGTGGCCTGCAGGGGGCTTTGGAGAACACCAAACCTCTCAGGGGGGACACCAACACAGTGGAGGCACTGAGAATGGCAAAAGAGTGGGTGCTGAGACCTGGAACAGCAGACGGGGCCCGGGCGGGGCTCCCTAGGGTGCTGGTGTGGTTGACTGATGGGGTGAAACCAGGTGATGTGATTGGACCAATGGCTGAGCTGCAGGAGGAAGGCGTGGCTGTGTTGGTGGTCTCCACTGGGCATGGCAACTATCAGGTGTTGAGGCAGGTGGTGACTCCGCCTGTGGAAAGCCACCTGTACTTTGTGGACATTGATGATATGAGTATCATCACAGAGGACCTGCGGGATGCCATCATTGAGATTATCCGAGCTGAGCGAATCAACATCCGTGAcgtctccaccaactctgccACGCTCCAGTGGCGACCCGTTCTGTCCGGTTTGGCGGGGTACTATGAGATTCACTTTGGTCCGCTTCCgacgggaggaggaggcgatgGAGGAACTGGAACTGGGACCAGTCCGAGCACCGGCGGTAGTGATTTCCAGAGACTAACCCCATCTGCAGATTCCAGCACTGCCAGGCTAACAGGCCTGAAGCCTGATACCACCTATACCGCCACACTGACCCCAAGGTCTAATGAACAAGAGTTTAACAAACTCTCCGTCACCTTCAAAACAAAGCCAGAGGTGCTGAGCCCAGCTGTGGTAACGGTCTCTGAGTCGGGGCAAACCAGCATTCGGGTGAGTTGGGGTCATCCTCAGCCGGAGACGGTCGCAAGTTACTACATCGAGTACTCCGCCCTGCCCAGGGGCAAGCTCCACGCTGTCACCGTGGGCCGAACGCAAAACTCCACGCTCCTCACCAACCTCCAACCAGATACCACTTACTTGGTCACCGTTAGTGCCCGGCACACCTCGGGCATGGAGAAGGCCATGTCTGTCAAAGTGTGTACTGAGGAAGTGACTCCAGCCCTGGCAGACCTCCAGCTGACCACAGTGGGTAGTGACTCAGTGCAGGTCGATTGGAAGAGCAGCGTAGGCAGTCTGAGGGGCTACTGGCTCACCTGGGAGGCACAGCAAAGCTCTGTCACTGGCCAGCGCTCCTCTCTCTATTTGCCTCCGGACTCTCTGTCAACGCGCCTCACACACCTCCCCCCAGAaactagagtgtgtgtgtcacccATTTACCGGACAGCGCGAGGAGAGGGACTGTGTTGCACGGCACAGTTCCATTCAGATGCATTATCATATGGCTTCCAGTCATAGCACCCCTGAGCTGCAAGTGCACCTTACCAAACATGGAGGGACGATGGAAAGAAGAATGCTGACTTTCATCCATAATTCTTTTCCATGCCTCTCCCCTCTGTGGATATCATCAAGGAGAGTTGTGTGGTTTGGCTTACTGAGCACTCATGTGGAAGCCATAGACACTTAAGAGTGGTCTTGGACAATATGGCCACATGTTAATGGCTACAATCTGCAACACATAGCACTATTTGCTTTTCCATTTCTTTGGTCTCATCTGGTTTACACCTGTAGTAAATGTATAATGTTTCAGTTTAGAGATGCAAGCGTgagataaagatatttcttgCAGTTA
>XM_039801442.1
CGAGCGAGGCGCATTTTGCATTGACTAGGAGCGTCCAGACATTGCGCACACAGACTAAAGTTTAGTTTCACTTCAACTTCCAGCGTCTCTCTAGTTACCGAGTGGTTGATCATGCTCAacgaagaggaaagagaaaaagagaaataaaaagccGGACTGGATGTGACTCAATTATGATTTCAACCATAATTTAGTGACTGGGAATGCGCTCCTTGGGGCTGCGGTGGATATATGGTTGACTCAAAAACCCATAACATTTGTGTTATAATTTGCTTCGGGGGAGCTTACCCATAACTATTGTGATGGAGAGCCACATGTTGTTTACATGGATGCTGTTGTGTATCCTCCTGCGGCAGTCGGCTACACAGAACCCCGCACCTGAAGGAGtgctgaaCTGCTGCGAGGGCGACGTCCTCTTCTTATTGGATTCCTCTGGAAGTGTGTCGGCCTATGAGCACTCCCGCATGCTCACCTTCCTGTCTGAGCTCCTCCTCCCCTTTTCGCTGGGAGAGGACCAGGTGAGGATAGGACTTCTGCAGGTGGGCACCCGACCACGCCTCGAGTTTGGCTTTGGCACCCATAGTACCCAGAGTGGCCTGCAGGGGGCTTTGGAGAACACCAAACCTCTCAGGGGGGACACCAACACAGTGGAGGCACTGAGAATGGCAAAAGAGTGGGTGCTGAGACCTGGAACAGCAGACGGGGCCCGGGCGGGGCTCCCTAGGGTGCTGGTGTGGTTGACTGATGGGGTGAAACCAGGTGATGTGATTGGACCAATGGCTGAGCTGCAGGAGGAAGGCGTGGCTGTGTTGGTGGTCTCCACTGGGCATGGCAACTATCAGGTGTTGAGGCAGGTGGTGACTCCGCCTGTGGAAAGCCACCTGTACTTTGTGGACATTGATGATATGAGTATCATCACAGAGGACCTGCGGGATGCCATCATTGAGATTATCCGAGCTGAGCGAATCAACATCCGTGAcgtctccaccaactctgccACGCTCCAGTGGCGACCCGTTCTGTCCGGTTTGGCGGGGTACTATGAGATTCACTTTGGTCCGCTTCCgacgggaggaggaggcgatgGAGGAACTGGAACTGGGACCAGTCCGAGCACCGGCGGTAGTGATTTCCAGAGACTAACCCCATCTGCAGATTCCAGCACTGCCAGGCTAACAGGCCTGAAGCCTGATACCACCTATACCGCCACACTGACCCCAAGGTCTAATGAACAAGAGTTTAACAAACTCTCCGTCACCTTCAAAACAAAGCCAGAGGTGCTGAGCCCAGCTGTGGTAACGGTCTCTGAGTCGGGGCAAACCAGCATTCGGGTGAGTTGGGGTCATCCTCAGCCGGAGACGGTCGCAAGTTACTACATCGAGTACTCCGCCCTGCCCAGGGGCAAGCTCCACGCTGTCACCGTGGGCCGAACGCAAAACTCCACGCTCCTCACCAACCTCCAACCAGATACCACTTACTTGGTCACCGTTAGTGCCCGGCACACCTCGGGCATGGAGAAGGCCATGTCTGTCAAAGTGTGTACTGAGGAAGTGACTCCAGCCCTGGCAGACCTCCAGCTGACCACAGTGGGTAGTGACTCAGTGCAGGTCGATTGGAAGAGCAGCGTAGGCAGTCTGAGGGGCTACTGGCTCACCTGGGAGGCACAGCAAAGCTCTGTCACTGGCCAGCGCTCCTCTCTCTATTTGCCTCCGGACTCTCTGTCAACGCGCCTCACACACCTCCCCCCAGAaactagagtgtgtgtgtcacccATTTACCGGACAGCGCGAGGAGAGGGACTGTGTTGCACGGCACAGTTCCATTCAGATGCATTATCATATGGCTTCCAGTCATAGCACCCCTGAGCTGCAAGTGCACCTTACCAAACATGGAGGGACGATGGAAAGAAGAATGCTGACTTTCATCCATAATTCTTTTCCATGCCTCTCCCCTCTGTGGATATCATCAAGGAGAGTTGTGTGGTTTGGCTTACTGAGCACTCATGTGGAAGCCATAGACACTTAAGAGTGGTCTTGGACAATATGGCCACATGTTAATGGCTACAATCTGCAACACATAGCACTATTTGCTTTTCCATTTCTTTGGTCTCATCTGGTTTACACCTGTAGTAAATGTATAATGTTTCAGTTTAGAGATGCAAGCGTgagataaagatatttcttgCAGTTA

Function

NR:

description
von Willebrand factor A domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801441.1 False 1918 mRNA 0.55 6 30670324 30679373
XM_039801442.1 True 2190 mRNA 0.53 6 30669576 30679373

Neighbor

gene id symbol gene type direction distance location
htr6 htr6,LOC102793426 coding upstream 19517 30644744 ~ 30650059 (+)
sike1 sike1 coding upstream 30581 30633801 ~ 30638995 (+)
ptpn11b LOC104956326 coding upstream 130455 30491366 ~ 30539121 (+)
angptl7 angptl7 coding upstream 503181 30162678 ~ 30166395 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding upstream 741598 29903859 ~ 29927978 (+)
LOC120559603 ralgapb coding downstream 2416 30681789 ~ 30706780 (+)
LOC120559606 NA coding downstream 29033 30708406 ~ 30786785 (+)
LOC120559032 prex1 coding downstream 108154 30787527 ~ 30797132 (+)
LOC120558404 LOC101486300,LOC103364333,LOC102795726,LOC100703627 coding downstream 198176 30877549 ~ 30889907 (+)
tti1 tti1,LOC102296807 coding downstream 223775 30903148 ~ 30926458 (+)
G54344 NA non-coding upstream 22498 30612145 ~ 30647078 (+)
G54343 csde1,LOC102790132 non-coding upstream 51339 30614211 ~ 30618237 (+)
G54368 NA non-coding upstream 66531 30598480 ~ 30603045 (+)
G54348 ampd1 non-coding upstream 78108 30529321 ~ 30591468 (+)
trnar-ucu_12 NA non-coding upstream 137385 30532100 ~ 30532191 (+)
G54462 NA non-coding downstream 192596 30871969 ~ 30872171 (+)
G54466 NA non-coding downstream 207919 30887292 ~ 30887495 (+)
G54500 ctnnbl1,LOC102783849 non-coding downstream 308739 30988112 ~ 30999107 (+)
G54523 NA non-coding downstream 481427 31160800 ~ 31164233 (+)
G54524 NA non-coding downstream 486729 31166102 ~ 31169205 (+)
micos10 minos1 other upstream 26955 30639760 ~ 30642621 (+)
agrn agrn other upstream 183011 30214610 ~ 30486565 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other upstream 886639 29769852 ~ 29782937 (+)
G54103 LOC103366252 other upstream 911566 29752446 ~ 29758010 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 1101803 29548744 ~ 29567773 (+)
G54383 NA other downstream 10279 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 118820 30798193 ~ 30837415 (+)
znf341 NA other downstream 462897 31142270 ~ 31159511 (+)
hdac7a LOC103352821 other downstream 708434 31387807 ~ 31463330 (+)
G54596 NA other downstream 842948 31522321 ~ 31525714 (+)

Expression


Co-expression Network