syn2a (LOC103368776,LOC108232134,LOC102310081,LOC100708766,LOC102780991,LOC102197631,LOC101471639)


Basic Information

Item Value
gene id syn2a
gene name LOC103368776,LOC108232134,LOC102310081,LOC100708766,LOC102780991,LOC102197631,LOC101471639
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15922374 ~ 15934225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801506.1
TCTTGCACTTACACTGGATAGCCCTGTATTTTAAATGCTGTGGTTCAAAAAAGCATGACGCCTGTGAGGCAGTAGAAAATGGGGGAGGGGTAAGGCACACCAGTGAGAGAGTGGAGAGATGAGAGaacaagaggaggaaggagaggcacGGCCGGAGCATCATTTGCAATGGTTGAGGAAAGCACAGGGTAAGGGGATTGGTTGAGGGAGAGTGTAGCGTCACCAACACTGAGGGGGAGCTCTGAGGATGCTCCACTGAACTGGGAGGGAATACGTTCGCTctgcagccatgaatTATTTGCGTCGGCGTCTCTCGGACAGCACGTTCATCTCCAACCTGCCCAATGGCTACATGACAGACCTCCAGAGGCCTGACAATGCTCAGCCTCCGCCACCTGGCTCCACCACCCCTGCCAAGTCCCCTACAACTGGGCCTACACCTCCAGCCACTTCCCCGGCTCCAGAGAGGAAACCCCAGCCATCTCAGTCCAGCGGAGCAGGCTTCTTTAGCTCCATCACCAACGCTGTTAAACAGACAGCTGCCTCAGCAGGGCTGGTGGAGCAGACCCAAGTCACGACACCTAAGAAGTTCAAGATTCTCTTGGTAATTGATGAACCACAACAGGAGTGGGCAAAATTATTCCGGGGAAAGAAACTACATGGGGATTATGACATCAAAGTGGAGCAGGCGGAATTCAATGAGATCAATGTTGTGGCTCATGCCAACAGGACTTGCAACGTTAACATGCAAGTTCTCAGAAATGGTACCAAGGTTATgagGTCATTCAAGCCAGACTTTGTCCTCATTCGTCAACATGCCTTCAGTATGACCCAGAATGAAGATTTCCGCAACCTGGTCATTGGTCTGCAGTATGGAGGTGTCCAATGCATCAACTCACTCGAGTCCATCTACAACCTGTGTGACAAGCCATGGGCGTTTGCCCAACTTATCAACACCCACAGGAAGCTTGGTTCGGAGAAGTTCCCTCTGATTGAGCAGACCTTTTACCCAAACTACAAGGAGATGGTAAGCATGCCATCATTCCCTGTCGTTGTGAAGATTGGACATGCCCACTCCGGTATTGGAAAGGTGAAGGTGGACAATCACAGTAAGTTCCAGGACATAGCCAGTGTTGTGGCTCTCACCCAGACGTACACCACCACAGAACCTCTCATTGACTCCAAGTACGACATAAGAATCCAGAAGATTGGCACTGACTACAAAGCCTACATGAGAACGTCTATATCTGGTAACTGGAAGACTAATACTGGCTCAGCTATGCTCGAACAGGTGGCCATGACTGATAGGTACAAGCTATGGGTTGACACCAGCTCAGAGATTTTCGGGGGCCTGGATATTTGCGCAGTCAAAGCTATCCATGGGAAAGATGGCAGAGATTTTATCACAGAGGTGGTGGGCTCCTCCATGCCCCTGGTCGGGGAGCACCAGGCCGAGGACAGGCAGCTCATCGCTGACATGGTGTTGGCAGCAATGAACCAGTCAGCAGAGAAGGAAGCTAATGCTCCCCAGAGACCCACTACCATACAGCCATCCCAGGGAGCTGGCCAGAAGGGAGAGATTGTTGGTGAACCCACTAAGAACGGTGCTGGGAACCCGCCTCAAGGTTGTCTGCAGTACATTCTCGACTGTAATGGCGTTGCAGTGGGTCCAAAACCAGTCCAGGCCAACTGAGTCACCAAGGAGAAAAGTGGGGGAAGTCTAGATAACAACGACGAAACTTAGCCGAACACAAGcacagacgtgtgtgtgtgtggatgctaATAGCTAGAATCAGATCTGGGTGACGTGAGCTCGGTACAGCTGAGTGCTGGTCTGGACTGTGTTTTTAACTCTATGCAGTGTCAAAATGTACTGTCTACTTGTTGACCTGTTGATTTGTGTGCTTGTATAGGTCACCTATGTTTCAGTAgctgtggtgttttctttgggGCTGTTGTTGATGATGTAAAAAGCAGATTGTGCCTACACTGAGTTCAGTGCTGCTCTGTGCTATCCGTTTAACCCGGGCTATATATCATTTGTTTGCCCCCCTACCCCTACCCCCTTTTCTGTTTTCTATTTTGGTGTGCACCTTTAAATATCGTTCAAACTGATGACTATGGTGCAGTTTGAAGTTTGTGTAAAGTTCaatatgtatacagtatgtgagtgtgtgtatggatgtaGTGGTGATTATTTTTCATACGTATACTAatagatatttatttttgttttgcatgATTGATACAAAGTACGGCGCAGTCAGTTAATAATGTCTGATCAAGTGAGATGTTCATGTAACATCGCTGTGTTCCCCAAGCTGTGTTCCCCAAGCTGTGTTCCCCAAGCTGTGTTCCTATGATTCATGCATTGTGAATGTGTCATATACTGTAGAAATGCATATTATAGAAGTTCTACAGGATACATGTATTAATTACCAAACATTCATTAACACAGTGTGCATACACGTACAAtagagacatacagtatgtggccTTTCTTAGAGTTAATTTTTTCATCTATATTGTCACAATGTCACCATGGAGAAGTAAAGGGATTTAAGAATATTAATAGATGGAcacataataaatataaaaaaaaattattaaagatTTTATCATGTAAGTTGTGTCTGCACACACaacttaaatatatttatatcatTTTGAACCAAAGAATAAATGATTTACTTTTTAATCAGTCTTTGCACTCCAGTAACCCACAATGTAAATATCAGTAAGGGGACTGTTAAGACTGCAGTATGTCACATGGAGTGTATAATTTCACCAGAGAACAATGTTCTGAGACAATATTTATGTTCTCAAATATGCTGTTGTAATTCACACGCCGGTGTGAGCTGATGCTGTATTCaaattgttgtctttttgcgTTTGGTTGTGTGGAGGCAGACATTACAGCTGATAATAAAAAGGTGTATAATGTATGATCTGCCATGTAATGACAGATATAATGCCCTCCCCTATGACCCTCACACTGGATATTGGCTATCATGGTGGTGTTGCCATGACAACAATGCAAGAGCTCTGAGGTTTTAGTGTGCTCGTGTTACTGCCATTCAAAGATTCAATACTTGTCCTGTGAGTTGATGGAAAGTGCAATATAGATCTTAGTTTTTTACTCAataatttaatgtatttattttgaaatcagaTCTTAAGTATAGTCATCCACACACTGAattgttttaaaacatttttacacaaaTCACTTGGTTGTTGTCCAGTGGCTTTTGTGGAGGCCATTTCATATATCTAATACCCTAAATGGTGAAACAGCTAAAAAGCAACCAAATCaactgtaaaaagaaatctgtaCCGTTttccaaaagtaaaaaaagtatgtTACTACTATAAAATATGTTCAGCAAGCTCTGTGTGCAATTCTTTTCCAAGTTGTATAAAGTGCCATTGTATCTGTGAGCGTATCCTTGTAAAAGCCATGCCTGAGGCTTTATGGGTGTGATGTTCTGTTTAATAGGAAATATGCCATGGCATTGATTTTTAAGGGAGGAACATGCAGAGGTACCCCAGCTGCATGGTAGACCTTGGTTCAGTGATCGTGATTGAATATTTGATCAATTATAACTGGACGTGTTTATTTGCCCATTGTGTTGAGGTGAAACTTGTATATTCAGACCTGCAGGACTGTAACTATTAAGGGCCATAGTAACTTGCTAAATATATGTACTTTCAAAACCGGTGTTGGACTGTTTAAAATCAAGTTCAGAATACAATATATTGTGGAAAAAACGTCCTTTCTGGATATTTCCTCTCTGTCACTGGCAATAAAGCTTCCTTTGCAATATA
>XM_039801507.1
TTTGCATTGAGAGCTCAGCCATTATCAGCTGTACACTGGGAACAGGGACTCCTCTGCAGAATACATATTCACACTGCTTGTTGACTCTTCTCtctcagctgcagccatgaatTATTTGCGTCGGCGTCTCTCGGACAGCACGTTCATCTCCAACCTGCCCAATGGCTACATGACAGACCTCCAGAGGCCTGACAATGCTCAGCCTCCGCCACCTGGCTCCACCACCCCTGCCAAGTCCCCTACAACTGGGCCTACACCTCCAGCCACTTCCCCGGCTCCAGAGAGGAAACCCCAGCCATCTCAGTCCAGCGGAGCAGGCTTCTTTAGCTCCATCACCAACGCTGTTAAACAGACAGCTGCCTCAGCAGGGCTGGTGGAGCAGACCCAAGTCACGACACCTAAGAAGTTCAAGATTCTCTTGGTAATTGATGAACCACAACAGGAGTGGGCAAAATTATTCCGGGGAAAGAAACTACATGGGGATTATGACATCAAAGTGGAGCAGGCGGAATTCAATGAGATCAATGTTGTGGCTCATGCCAACAGGACTTGCAACGTTAACATGCAAGTTCTCAGAAATGGTACCAAGGTTATgagGTCATTCAAGCCAGACTTTGTCCTCATTCGTCAACATGCCTTCAGTATGACCCAGAATGAAGATTTCCGCAACCTGGTCATTGGTCTGCAGTATGGAGGTGTCCAATGCATCAACTCACTCGAGTCCATCTACAACCTGTGTGACAAGCCATGGGCGTTTGCCCAACTTATCAACACCCACAGGAAGCTTGGTTCGGAGAAGTTCCCTCTGATTGAGCAGACCTTTTACCCAAACTACAAGGAGATGGTAAGCATGCCATCATTCCCTGTCGTTGTGAAGATTGGACATGCCCACTCCGGTATTGGAAAGGTGAAGGTGGACAATCACAGTAAGTTCCAGGACATAGCCAGTGTTGTGGCTCTCACCCAGACGTACACCACCACAGAACCTCTCATTGACTCCAAGTACGACATAAGAATCCAGAAGATTGGCACTGACTACAAAGCCTACATGAGAACGTCTATATCTGGTAACTGGAAGACTAATACTGGCTCAGCTATGCTCGAACAGGTGGCCATGACTGATAGGTACAAGCTATGGGTTGACACCAGCTCAGAGATTTTCGGGGGCCTGGATATTTGCGCAGTCAAAGCTATCCATGGGAAAGATGGCAGAGATTTTATCACAGAGGTGGTGGGCTCCTCCATGCCCCTGGTCGGGGAGCACCAGGCCGAGGACAGGCAGCTCATCGCTGACATGGTGTTGGCAGCAATGAACCAGTCAGCAGAGAAGGAAGCTAATGCTCCCCAGAGACCCACTACCATACAGCCATCCCAGGGAGCTGGCCAGAAGGGAGAGATTGTTGGTGAACCCACTAAGAACGGTGCTGGGAACCCGCCTCAAGCAAATCCACACTGCCAGTGAAGATACAGTGAACGCTGAGACCATCTGCACTTTGAGGAAGTCCTCTGGAAGTCTGTTCTCTGACTAAAGAAGCTTTATTTTCAACCTAGATGACTCCACAACTGCTCACCTGCGAGTTTGCTTAGCTATACAGGAAATACTGACGTTATAGTACATATTAGGTATAGTATTAGGTTCTAGTATATATTAGGTATTTTGTCAATGACATGATATGAACCATGCTGTAAGGTGAATGTCTTTACAAATCAGATGTATACCCACTCCAAGAATAATGAGTTTTGTGACTGCTTCACTGGAAATGTATTTCTTTAGTTGTATGCTGTCTGGTACTCACCTTCTGAACATGTAACCCTAAAATGTGGTTATAGTGATTATCATTAGTAAATACTGTGTACTTAA

Function

NR:

description
PREDICTED: synapsin-2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801506.1 True 3828 mRNA 0.43 12 15922374 15933298
XM_039801507.1 False 1861 mRNA 0.48 12 15922661 15934225

Neighbor

gene id symbol gene type direction distance location
LOC120559823 LOC103368780,LOC104958736,LOC100707957 coding upstream 67331 15850652 ~ 15855043 (+)
LOC120558427 LOC104958737 coding upstream 74579 15841943 ~ 15847795 (+)
spo11 spo11,LOC103368783 coding upstream 81597 15833183 ~ 15840777 (+)
mtg2 mtg2 coding upstream 221998 15697279 ~ 15700376 (+)
LOC120559909 ss18l1,LOC102784650 coding upstream 225496 15687325 ~ 15696878 (+)
cnbpa cnbp,LOC100709667,LOC101470196 coding downstream 18277 15952502 ~ 15956674 (+)
LOC120559633 LOC102199705,LOC100709941 coding downstream 23358 15957583 ~ 15961003 (+)
LOC120559610 fbln2 coding downstream 169134 16103359 ~ 16127076 (+)
LOC120559808 NA coding downstream 201115 16135340 ~ 16136813 (+)
fbxw12 fbxw12 coding downstream 228472 16162697 ~ 16173601 (+)
G50029 NA non-coding upstream 216906 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 252830 15667249 ~ 15669544 (+)
G50011 NA non-coding upstream 283073 15637483 ~ 15639301 (+)
G50014 NA non-coding upstream 499766 15422319 ~ 15422608 (+)
G50003 NA non-coding upstream 644728 15277446 ~ 15277646 (+)
G50077 NA non-coding downstream 15024 15949249 ~ 15951172 (+)
G50218 NA non-coding downstream 351332 16285557 ~ 16285759 (+)
G50280 NA non-coding downstream 491393 16425618 ~ 16425820 (+)
LOC120558722 NA non-coding downstream 610044 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 632776 16567001 ~ 16569382 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other upstream 55005 15776217 ~ 15867369 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other upstream 123417 15772217 ~ 15798957 (+)
G49776 NA other upstream 1344802 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 1354918 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 1694486 14205597 ~ 14227888 (+)
LOC120559121 NA other downstream 370087 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 388596 16322821 ~ 16379645 (+)
brpf1 brpf1 other downstream 445819 16380044 ~ 16396208 (+)
LOC120559923 NA other downstream 463444 16397669 ~ 16408461 (+)
eif2d eif2d other downstream 1043672 16977897 ~ 16994701 (+)

Expression


Co-expression Network