cnbpa (cnbp,LOC100709667,LOC101470196)


Basic Information

Item Value
gene id cnbpa
gene name cnbp,LOC100709667,LOC101470196
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15952502 ~ 15956674 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801510.1
GTGACCAATGACTATGCAGGTTTTTACTGGATACTGTGAATGGCAATTCAGGAACTCCCGTTCATCACACCGCATGTAGCGCAAAGAAGGAGGCGTAAACACTGACAGAGCTAGGTAGCCAGCGAGAGAATGGAAATGAGCAGTAGCAGCGAGTGCTTTGGATGTGGCCGCTCTGGGCATTGGGTCAAGCATTGCCCAAGCGCACGTGGTGGAGGTGGACGCGGCAGGGGTCGGGGACGAGGCAAGGAGCTGTTCTGTTATCGGTGTGGAGACCAAGGACACATGGCCAGGGACTGTGACCAAACTGAGGATGcATGCTACAACTGCCACAGGAGTGGCCACATTTCCCGGGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGCTCTGCTACACCTGCGGCAAAGCTGGCCACATGGCCCGTGACTGTGATCATGCCAACGAGCAGAAGTGCTACTCCTGCGGTGGGTTTGGCCACATCCAGAAACTTTGCGATAAGGTGAAATGTTACAGGTGTGGCGATATTGGCCACGTTGCTGTGCATTGCAGTAAAGCCAGCGAGACTAACTGCTACAACTGCGGAAAGGCGGGCCACCTGGCAAAAGATTGCACCATTGAAGGCAGTGCATAATCAGTGCCCTCTGTTGCCCCTCCTTTTTTCAGATTGATGGttggttgtattattttctcTGAATCCTCTTCACTGGCCAAAGGTTGGCTAACGGAGGCTAGTCCCAGGCCAGTGAGCCTCTCGACATGTAATACAATGAAAggggtgaaaaaaaatctttctgcattcaatacaaaaatgttttagtttgGTAGCGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCCTTTCCAAGCCACTGGTGATCAGAGATGAATAAATGGGACTAAATATGGGAATCTATAGGACCTCTGAGCTTGTGGAAGAGAGCCTCAGTAAAATGAGATAGAAGAAGGGAGTAAATGGAAACCAAACTTCCATGTATGgttattttggtttgttttagtGGGATATGAGTTGGCCAAGAGAGTATGACATGGAAACAGTTCATAACATGATGCATTTCAGCCCTACAAGCAGCTAAAAGGGCGATAACAAACCACATGTTATATTGCTACGATATAAACATTTTGGAGGTATTAAAAGAAACGCGTTCTTTTATAGAaatctgtttacaatttaaatatCACTTGGTAGTCCAAGGtagactttttcttttaaaatggctttggaatttttgtttttttaccttgGCAAAATTTAACATCAAGAGCAGTTGTCAGCAGAATTAGGAGTTATTTGGGaatgaaaaaatgttttcacagaaatcaaaatgttatttttgtacAATATCACTTAGActactgtataaataccatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAAGTGCAACTGAAGTCCTAGAAAAtagaaatgtaattttaaactaTCAATAAAGCTGGAGGAGCACGGGGAGGA
>XM_039801511.1
GTTTTTACTGGATACTGTGAATGGCAATTCAGGAACTCCCGTTCATCACACCGCATGTAGCGCAAAGAAGGAGGCGTAAACACTGACAGAGCTAGGTAGCCAGCGAGCACCGTCAGCAAACGAAAGAAGTGTGGCCTATGGCGATCACAACATGATTCCGTTGAGGAAATCGTAGAATGGAAATGAGCAGTAGCAGCGAGTGCTTTGGATGTGGCCGCTCTGGGCATTGGGTCAAGCATTGCCCAAGCGCACGTGGTGGAGGTGGACGCGGCAGGGGTCGGGGACGAGGCAAGGAGCTGTTCTGTTATCGGTGTGGAGACCAAGGACACATGGCCAGGGACTGTGACCAAACTGAGGATGcATGCTACAACTGCCACAGGAGTGGCCACATTTCCCGGGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGCTCTGCTACACCTGCGGCAAAGCTGGCCACATGGCCCGTGACTGTGATCATGCCAACGAGCAGAAGTGCTACTCCTGCGGTGGGTTTGGCCACATCCAGAAACTTTGCGATAAGGTGAAATGTTACAGGTGTGGCGATATTGGCCACGTTGCTGTGCATTGCAGTAAAGCCAGCGAGACTAACTGCTACAACTGCGGAAAGGCGGGCCACCTGGCAAAAGATTGCACCATTGAAGGCAGTGCATAATCAGTGCCCTCTGTTGCCCCTCCTTTTTTCAGATTGATGGttggttgtattattttctcTGAATCCTCTTCACTGGCCAAAGGTTGGCTAACGGAGGCTAGTCCCAGGCCAGTGAGCCTCTCGACATGTAATACAATGAAAggggtgaaaaaaaatctttctgcattcaatacaaaaatgttttagtttgGTAGCGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCCTTTCCAAGCCACTGGTGATCAGAGATGAATAAATGGGACTAAATATGGGAATCTATAGGACCTCTGAGCTTGTGGAAGAGAGCCTCAGTAAAATGAGATAGAAGAAGGGAGTAAATGGAAACCAAACTTCCATGTATGgttattttggtttgttttagtGGGATATGAGTTGGCCAAGAGAGTATGACATGGAAACAGTTCATAACATGATGCATTTCAGCCCTACAAGCAGCTAAAAGGGCGATAACAAACCACATGTTATATTGCTACGATATAAACATTTTGGAGGTATTAAAAGAAACGCGTTCTTTTATAGAaatctgtttacaatttaaatatCACTTGGTAGTCCAAGGtagactttttcttttaaaatggctttggaatttttgtttttttaccttgGCAAAATTTAACATCAAGAGCAGTTGTCAGCAGAATTAGGAGTTATTTGGGaatgaaaaaatgttttcacagaaatcaaaatgttatttttgtacAATATCACTTAGActactgtataaataccatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAAGTGCAACTGAAGTCCTAGAAAAtagaaatgtaattttaaactaTCAATAAAGCTGGAGGAGCACGGGGAGGA
>XM_039801512.1
GTGACCAATGACTATGCAGGTTTTTACTGGATACTGTGAATGGCAATTCAGGAACTCCCGTTCATCACACCGCATGTAGCGCAAAGAAGGAGGCGTAAACACTGACAGAGCTAGGTAGCCAGCGAGAGAATGGAAATGAGCAGTAGCAGCGAGTGCTTTGGATGTGGCCGCTCTGGGCATTGGGTCAAGCATTGCCCAAGCGCACGTGGTGGAGGTGGACGCGGCAGGGGTCGGGGACGAGAGCTGTTCTGTTATCGGTGTGGAGACCAAGGACACATGGCCAGGGACTGTGACCAAACTGAGGATGcATGCTACAACTGCCACAGGAGTGGCCACATTTCCCGGGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGCTCTGCTACACCTGCGGCAAAGCTGGCCACATGGCCCGTGACTGTGATCATGCCAACGAGCAGAAGTGCTACTCCTGCGGTGGGTTTGGCCACATCCAGAAACTTTGCGATAAGGTGAAATGTTACAGGTGTGGCGATATTGGCCACGTTGCTGTGCATTGCAGTAAAGCCAGCGAGACTAACTGCTACAACTGCGGAAAGGCGGGCCACCTGGCAAAAGATTGCACCATTGAAGGCAGTGCATAATCAGTGCCCTCTGTTGCCCCTCCTTTTTTCAGATTGATGGttggttgtattattttctcTGAATCCTCTTCACTGGCCAAAGGTTGGCTAACGGAGGCTAGTCCCAGGCCAGTGAGCCTCTCGACATGTAATACAATGAAAggggtgaaaaaaaatctttctgcattcaatacaaaaatgttttagtttgGTAGCGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCCTTTCCAAGCCACTGGTGATCAGAGATGAATAAATGGGACTAAATATGGGAATCTATAGGACCTCTGAGCTTGTGGAAGAGAGCCTCAGTAAAATGAGATAGAAGAAGGGAGTAAATGGAAACCAAACTTCCATGTATGgttattttggtttgttttagtGGGATATGAGTTGGCCAAGAGAGTATGACATGGAAACAGTTCATAACATGATGCATTTCAGCCCTACAAGCAGCTAAAAGGGCGATAACAAACCACATGTTATATTGCTACGATATAAACATTTTGGAGGTATTAAAAGAAACGCGTTCTTTTATAGAaatctgtttacaatttaaatatCACTTGGTAGTCCAAGGtagactttttcttttaaaatggctttggaatttttgtttttttaccttgGCAAAATTTAACATCAAGAGCAGTTGTCAGCAGAATTAGGAGTTATTTGGGaatgaaaaaatgttttcacagaaatcaaaatgttatttttgtacAATATCACTTAGActactgtataaataccatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAAGTGCAACTGAAGTCCTAGAAAAtagaaatgtaattttaaactaTCAATAAAGCTGGAGGAGCACGGGGAGGA
>XM_039801513.1
GTGACCAATGACTATGCAGGTTTTTACTGGATACTGTGAATGGCAATTCAGGAACTCCCGTTCATCACACCGCATGTAGCGCAAAGAAGGAGGCGTAAACACTGACAGAGCTAGGTAGCCAGCGAGAGAATGGAAATGAGCAGTAGCAGCGAGTGCTTTGGATGTGGCCGCTCTGGGCATTGGGTCAAGCATTGCCCAAGCGCACGTGGTGGAGGTGGACGCGGCAGGGGTCGGGGACGAGGCAAGGAGCTGTTCTGTTATCGGTGTGGAGACCAAGGACACATGGCCAGGGACTGTGACCAAACTGAGGATGcATGCTACAACTGCCACAGGAGTGGCCACATTTCCCGGGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGCTCTGCTACACCTGCGGCAAAGCTGGCCACATGGCCCGTGACTGTGATCATGCCAACGAGCAGAAGTGCTACTCCTGCGGTGGGTTTGGCCACATCCAGAAACTTTGCGATAAGGTGAAATGTTACAGTAAAGCCAGCGAGACTAACTGCTACAACTGCGGAAAGGCGGGCCACCTGGCAAAAGATTGCACCATTGAAGGCAGTGCATAATCAGTGCCCTCTGTTGCCCCTCCTTTTTTCAGATTGATGGttggttgtattattttctcTGAATCCTCTTCACTGGCCAAAGGTTGGCTAACGGAGGCTAGTCCCAGGCCAGTGAGCCTCTCGACATGTAATACAATGAAAggggtgaaaaaaaatctttctgcattcaatacaaaaatgttttagtttgGTAGCGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCCTTTCCAAGCCACTGGTGATCAGAGATGAATAAATGGGACTAAATATGGGAATCTATAGGACCTCTGAGCTTGTGGAAGAGAGCCTCAGTAAAATGAGATAGAAGAAGGGAGTAAATGGAAACCAAACTTCCATGTATGgttattttggtttgttttagtGGGATATGAGTTGGCCAAGAGAGTATGACATGGAAACAGTTCATAACATGATGCATTTCAGCCCTACAAGCAGCTAAAAGGGCGATAACAAACCACATGTTATATTGCTACGATATAAACATTTTGGAGGTATTAAAAGAAACGCGTTCTTTTATAGAaatctgtttacaatttaaatatCACTTGGTAGTCCAAGGtagactttttcttttaaaatggctttggaatttttgtttttttaccttgGCAAAATTTAACATCAAGAGCAGTTGTCAGCAGAATTAGGAGTTATTTGGGaatgaaaaaatgttttcacagaaatcaaaatgttatttttgtacAATATCACTTAGActactgtataaataccatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAAGTGCAACTGAAGTCCTAGAAAAtagaaatgtaattttaaactaTCAATAAAGCTGGAGGAGCACGGGGAGGA

Function

symbol description
cnbp Enables G-quadruplex DNA binding activity. Involved in G-quadruplex DNA formation and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleus. Predicted to be active in cytoplasm. Implicated in myotonic dystrophy type 2.

NR:

description
PREDICTED: zinc finger protein 9 isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09250 CNBP; cellular nucleic acid-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801510.1 False 1496 mRNA 0.44 5 15952502 15956674
XM_039801511.1 True 1543 mRNA 0.44 6 15952521 15956674
XM_039801512.1 False 1490 mRNA 0.44 5 15952502 15956674
XM_039801513.1 False 1460 mRNA 0.44 5 15952502 15956674

Neighbor

gene id symbol gene type direction distance location
syn2a LOC103368776,LOC108232134,LOC102310081,LOC100708766,LOC102780991,LOC102197631,LOC101471639 coding upstream 18277 15922374 ~ 15934225 (+)
LOC120559823 LOC103368780,LOC104958736,LOC100707957 coding upstream 97459 15850652 ~ 15855043 (+)
LOC120558427 LOC104958737 coding upstream 104707 15841943 ~ 15847795 (+)
spo11 spo11,LOC103368783 coding upstream 111725 15833183 ~ 15840777 (+)
mtg2 mtg2 coding upstream 252126 15697279 ~ 15700376 (+)
LOC120559633 LOC102199705,LOC100709941 coding downstream 909 15957583 ~ 15961003 (+)
LOC120559610 fbln2 coding downstream 146685 16103359 ~ 16127076 (+)
LOC120559808 NA coding downstream 178666 16135340 ~ 16136813 (+)
fbxw12 fbxw12 coding downstream 206023 16162697 ~ 16173601 (+)
LOC120558327 LOC103361995,LOC104966709 coding downstream 219903 16176577 ~ 16220258 (+)
G50077 NA non-coding upstream 1330 15949249 ~ 15951172 (+)
G50029 NA non-coding upstream 247034 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 282958 15667249 ~ 15669544 (+)
G50011 NA non-coding upstream 313201 15637483 ~ 15639301 (+)
G50014 NA non-coding upstream 529894 15422319 ~ 15422608 (+)
G50218 NA non-coding downstream 328883 16285557 ~ 16285759 (+)
G50280 NA non-coding downstream 468944 16425618 ~ 16425820 (+)
LOC120558722 NA non-coding downstream 587595 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 610327 16567001 ~ 16569382 (+)
G50320 NA non-coding downstream 623385 16580059 ~ 16580993 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other upstream 85133 15776217 ~ 15867369 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other upstream 153545 15772217 ~ 15798957 (+)
G49776 NA other upstream 1374930 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 1385046 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 1724614 14205597 ~ 14227888 (+)
LOC120559121 NA other downstream 347638 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 366147 16322821 ~ 16379645 (+)
brpf1 brpf1 other downstream 423370 16380044 ~ 16396208 (+)
LOC120559923 NA other downstream 440995 16397669 ~ 16408461 (+)
eif2d eif2d other downstream 1021223 16977897 ~ 16994701 (+)

Expression


Co-expression Network