c1galt1a (LOC104956867)


Basic Information

Item Value
gene id c1galt1a
gene name LOC104956867
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21607339 ~ 21620201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801613.1
TTTTCAGAAGAATGTAAATCTGCGCAGTGGCTTTCCTCTCTAATCATCTCATTTGGCGATGCAAAACAGGGACGACTTGAATCAAAAACAATACATCAGATGAATGTGACCAGCATGCGACTATATGACTGACAGGTGTATCAGGCTGGTGCCTTTTTTTCAGAAACAGGAAATATTTCGCTGCTTTAGGGGTTGCAAGCAGATCGTGCCCACAAATCGCTGATGTCCCAGCAAAgACATGCTGTAAATGGGACATTACGGTGCTGGGGACGGTCTCACCATGAAGGGCTCCAGCTCCAGATGGGCCTTCTCCCTGGGCTTCTTGGTGGGGGCCTGCAGCATCTACTTCTTCCTGCACCAGGTGTGGTTTGAGAGGAGCTACCCCGTGCTGTCAGAGGCTCAGGAAAGAGCCACAGCGGTGTCGGAGAGACCAATCAgctggaggaaggagggagctGCTCTTATCAACCTGCTCCATCCTCACCATGCAGATGAAGACAGTCGGGTTGCAGATGTGTTGTACCAGAAGGTACGTGTTCTATGTTGGGTGATGACGGGGCCGTATAACCTGCAGAGTAGGGCCCGCCATGTCAGGGCCACCTGGAGTCGCCACTGCAATGTGGTGGTGTTCATGAGCTCTGAAGAGGACCTAGACTTCCCCACTGTGGGCCTGGGCACCAAGGAGGGCCGTGACCAGCTCTACTGGAAGACCATTCGAGCCTTCCATTACGTCTACGAGCACCATGCAAGTGAAGCCGATTGGTTCTTAAAAGCAGATGATGACACATATGTGGTGGTGGACAACCTGCGCTGGATTCTGTCCAACCACACCCCTGAAGAGCCCATCTACTTCGGCAAACGCTTCAAGCCTTACACCAAGCAAGGCTACATGAGCGGAGGGGCAGGCTATGTTCTAAGCAAAGAGGCCCTCAAGAGATTTGTGGAAGGTTTTCGGACCAAAGTTTGCTCACACACCACACCTGTAGAGGACTTGGCGCTGGGGCAGTGTTTGGAGAAGATGGGCGTTCTGGCAGGGGACTCCAGAGATACTTTGCATCGTGAAACTTTCCACCCGTTTGTGCCAGAGCACCATCTAACTGGCAAGTTCTCCAAGAGCTTCTGGTACTGGAGCTATTGCTACTACCCAATTGTTGAGGGTCCGCAGTGCTGCTCTGACCTGGCAGTATCTTTCCATTATGTAGAAGCAGAGCTGATGTACACACTGGAGTACTACACCTATCATCTGAGAGCGTACGGCTACAGGCCACGCTACCGACCCTCCTTACGTCTGGGTCTGAGCCATGGCCCACTCTCACAGACAACCGGGACTGTGGGACTTAAAGGGGTTCAGGAGGTGACAGATGGAAGGAGTCACACAACGTCAGCCTTCCTCGCTAGTGTAAACCAAACTAAATCAGGGACAGAGCAAGAGAAAAGGACAAAAGACAATCTAATCTCTCACGCCACTGAGAACAAGACTACAGTCGCTCAAGGCAGGCACCTCTGATTCCCTGCGCCGTATGTCAACTAATATTTTCTTCAGAGAGGTCTTCCTTGATCCGATCGCAGTATAATTCCAGCCAGTATGTCACTATAAACGCCCACGGTGAGAGTGATTAAAATTTGAATGTGATTTTTGTAGCGGCA

Function

NR:

description
PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

GO: NA

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801613.1 True 1647 mRNA 0.51 4 21607339 21620201

Neighbor

gene id symbol gene type direction distance location
LOC120559688 NA coding upstream 52144 21553252 ~ 21555195 (+)
slc26a10 LOC103368469 coding upstream 102419 21498706 ~ 21504920 (+)
arhgef25a LOC102292298,LOC100705949,LOC101484609 coding upstream 133965 21417136 ~ 21473374 (+)
kmt2d kmt2d coding upstream 247352 21323314 ~ 21359987 (+)
dhh dhh coding upstream 289417 21312552 ~ 21317922 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding downstream 117279 21737480 ~ 21746717 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding downstream 156270 21776471 ~ 21780950 (+)
ribc1 NA coding downstream 203317 21823518 ~ 21827890 (+)
idh3g idh3g coding downstream 402633 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 490786 22110987 ~ 22119609 (+)
G51811 NA non-coding upstream 29084 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 226090 21379001 ~ 21381249 (+)
G51739 NA non-coding upstream 231076 21376031 ~ 21376263 (+)
G51738 LOC104956875,LOC101062677 non-coding upstream 240309 21366676 ~ 21367030 (+)
G51737 acvr1b non-coding upstream 240762 21366301 ~ 21366577 (+)
G51900 smc1a non-coding downstream 192411 21812612 ~ 21813631 (+)
G51902 smc1a non-coding downstream 199664 21819865 ~ 21820675 (+)
LOC120559724 NA non-coding downstream 275140 21895341 ~ 21896456 (+)
G51921 huwe1 non-coding downstream 278923 21899124 ~ 21900231 (+)
G51922 huwe1 non-coding downstream 280243 21900444 ~ 21901003 (+)
G51804 NA other upstream 47990 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 242909 21361290 ~ 21364430 (+)
G51716 NA other upstream 316377 21289588 ~ 21290962 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 1074770 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 1541604 20063992 ~ 20065735 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 96908 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 163016 21783217 ~ 21807914 (+)
G51926 NA other downstream 283341 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 426562 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 469996 22090197 ~ 22094890 (+)

Expression


Co-expression Network