ribc1


Basic Information

Item Value
gene id ribc1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21823518 ~ 21827890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801674.1
GTTGTTTGGAGTTGCTCTCACGACCTCAGAATTGTGCCCATTTTATTCCACCACTGAAGTTTAACGTACAGCAGATGACCATGAGTTACCATGGTTACCAAGGGCATCTAAACACAACAGAATCTGACCGGCGAAACTCCGTCATTCACTGAGGGGCTGTATGCTGTCCCTAAATTGACTGAAATAATTTGGCCAAATCTGTATTGTCAGAGGCTCATTAGAAACTGAGAACATGTACAAAGTTGATTTGCCTGTAGAGCAGTCCTTAGAAAAGGCTGTGGAGAGGCGAAGGTCTGCAGAAACAGCACGCAAGGCCCGGATCTTCAACACCCGGCTCCGTGTGATGGGCCTTGATCTTGATGCTCTCAACCAACAGGTCCAGGAGAAAAAACATCAGCAAAACATGGAGATACAACGGGGCAACGCTTTTGACAAGCTGGGAGAATATCACGATAAAGCACTGCTGCAGCAAGACATTGATGAAAGAGAGAAGCGAGCGGCTTTGCACACTGACCTGACCAAGTATTGGGCCAGTCATCAGCGTGAAGAGGACTCACACGATGCTGATCTCAAGTGTGGCCTGAAGGGGGCATTCAGGATCACCATTCCAGAGGGTGAGCTGGGACCTGCCAGTATGAAAATCTTTCAGGGAGAGGGTATCGGAGAGGAGCAAAGGAGGAGAGAACAAatgaaaaagacagacagagatctGCGAGCACAGAAGGAAGACAATGAGAAAATGCACATGGGAGACAAGCACAGAGagaTGCTAGTGAGCAAAGAGCTGGTGCATCAGGACCTTAGGGGAGTTCAGCAAAATGCACTAGAGGGGGAGTGTAAGAAAGCTGTCCGCATCGCACTCGACAACTACAATCAAGCTCTGGCTGCAGAGCGGGCAGAGAAACTGAAGGAGCAGCACAGGCAAGAGGAAAGGGAGAACCTTGCAGAGATGCAGCACACTCGGACATCCGACATGATGACAGAGTGTGCAGAGGCAGCAAagagagaggtggaaggagGGAGGCCACCCCGGGTTCTGGTAGACAAGTGGAAGGGGATGAGCCCTGAGCAGCTGAGTGACATccacagggagagagaagagcagagTCTTGAGAAACAGAGACAACGTGATGCTGAAAAGATTCAGGATTCAGCTTGGGAACTACAGCTCCTGAAGCTGTCCAGAGAagcagaggagcaggagaggagagcagaagagctgaggagagagaagaggactCAGACAGATCTTTACAACATGCAGCTGGCCAGAGAGCAGCAGGCATATCAGGAGTACCTGAACAAGAAGCTATACACCAACAAACCCAGCAAGGAATACTTTTACCAATTCAACACCGGCTCCCGCTGAACCACTACCACACTTTGCTTGTCCTCCTGTGACAATGTGCTAATAAAATCTATTGATTGTTATACTCACACTCAATATGAATTGAATCACTGATTAATCAATACTTGTTGCTTATTTTTGAATTGACACACATGCATTGCTTTTATAAGCTTATACTAAGGACAAGAAAGGGACCTTTTTTGTTACAGATTGTtccacatattttatttttcagtcaTAAATCCAGTTACAGTGGTAGATTCATAATGCAGTTACAGTTATATTGGCCCCATATGTGGTACAAGTCCACTCAACCCCTGTCGTTCACCCATTATACATATAAATACCATCAGTCCCATTGTGCACCCCACACACAATAAAGAGGCACATATAGACCCGGCTGTGACACACACTCCCTacccctccttcctcccctATTTTCtctt
>XM_039801675.1
GTTGTTTGGAGTTGCTCTCACGACCTCAGAATTGTGCCCATTTTATTCCACCACTGAAGTTTAACGTACAGCAGATGACCATGAGTTACCATGGTTACCAAGGGCATCTAAACACAACAGAATCTGACCGGCGAAACTCCGTCATTCACTGAGGGGCTGTATGCTGTCCCTAAATTGACTGAAATAATTTGGCCAAATCTGTATTGTCAGAGGTCCAGGAGAAAAAACATCAGCAAAACATGGAGATACAACGGGGCAACGCTTTTGACAAGCTGGGAGAATATCACGATAAAGCACTGCTGCAGCAAGACATTGATGAAAGAGAGAAGCGAGCGGCTTTGCACACTGACCTGACCAAGTATTGGGCCAGTCATCAGCGTGAAGAGGACTCACACGATGCTGATCTCAAGTGTGGCCTGAAGGGGGCATTCAGGATCACCATTCCAGAGGGTGAGCTGGGACCTGCCAGTATGAAAATCTTTCAGGGAGAGGGTATCGGAGAGGAGCAAAGGAGGAGAGAACAAatgaaaaagacagacagagatctGCGAGCACAGAAGGAAGACAATGAGAAAATGCACATGGGAGACAAGCACAGAGagaTGCTAGTGAGCAAAGAGCTGGTGCATCAGGACCTTAGGGGAGTTCAGCAAAATGCACTAGAGGGGGAGTGTAAGAAAGCTGTCCGCATCGCACTCGACAACTACAATCAAGCTCTGGCTGCAGAGCGGGCAGAGAAACTGAAGGAGCAGCACAGGCAAGAGGAAAGGGAGAACCTTGCAGAGATGCAGCACACTCGGACATCCGACATGATGACAGAGTGTGCAGAGGCAGCAAagagagaggtggaaggagGGAGGCCACCCCGGGTTCTGGTAGACAAGTGGAAGGGGATGAGCCCTGAGCAGCTGAGTGACATccacagggagagagaagagcagagTCTTGAGAAACAGAGACAACGTGATGCTGAAAAGATTCAGGATTCAGCTTGGGAACTACAGCTCCTGAAGCTGTCCAGAGAagcagaggagcaggagaggagagcagaagagctgaggagagagaagaggactCAGACAGATCTTTACAACATGCAGCTGGCCAGAGAGCAGCAGGCATATCAGGAGTACCTGAACAAGAAGCTATACACCAACAAACCCAGCAAGGAATACTTTTACCAATTCAACACCGGCTCCCGCTGAACCACTACCACACTTTGCTTGTCCTCCTGTGACAATGTGCTAATAAAATCTATTGATTGTTATACTCACACTCAATATGAATTGAATCACTGATTAATCAATACTTGTTGCTTATTTTTGAATTGACACACATGCATTGCTTTTATAAGCTTATACTAAGGACAAGAAAGGGACCTTTTTTGTTACAGATTGTtccacatattttatttttcagtcaTAAATCCAGTTACAGTGGTAGATTCATAATGCAGTTACAGTTATATTGGCCCCATATGTGGTACAAGTCCACTCAACCCCTGTCGTTCACCCATTATACATATAAATACCATCAGTCCCATTGTGCACCCCACACACAATAAAGAGGCACATATAGACCCGGCTGTGACACACACTCCCTacccctccttcctcccctATTTTCtctt

Function

NR:

description
RIB43A-like with coiled-coils protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801674.1 True 1794 mRNA 0.47 9 21823518 21827890
XM_039801675.1 False 1630 mRNA 0.47 9 21823518 21827890

Neighbor

gene id symbol gene type direction distance location
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 42568 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 76801 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 203317 21607339 ~ 21620201 (+)
LOC120559688 NA coding upstream 268323 21553252 ~ 21555195 (+)
slc26a10 LOC103368469 coding upstream 318598 21498706 ~ 21504920 (+)
idh3g idh3g coding downstream 194944 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 283097 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 356406 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 375201 22203091 ~ 22213864 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 412592 22240482 ~ 22244763 (+)
G51902 smc1a non-coding upstream 2843 21819865 ~ 21820675 (+)
G51900 smc1a non-coding upstream 9887 21812612 ~ 21813631 (+)
G51811 NA non-coding upstream 245263 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 442269 21379001 ~ 21381249 (+)
G51739 NA non-coding upstream 447255 21376031 ~ 21376263 (+)
LOC120559724 NA non-coding downstream 67451 21895341 ~ 21896456 (+)
G51921 huwe1 non-coding downstream 71234 21899124 ~ 21900231 (+)
G51922 huwe1 non-coding downstream 72554 21900444 ~ 21901003 (+)
G51927 NA non-coding downstream 77165 21905055 ~ 21906248 (+)
G51935 NA non-coding downstream 86435 21914325 ~ 21914837 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 15604 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 103395 21717109 ~ 21720123 (+)
G51804 NA other upstream 264169 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 459088 21361290 ~ 21364430 (+)
G51716 NA other upstream 532556 21289588 ~ 21290962 (+)
G51926 NA other downstream 75652 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 218873 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 262307 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 728439 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 734264 22562154 ~ 22562521 (+)

Expression


Co-expression Network