tmem9 (tmem9,LOC107707676,LOC106572715,LOC107669678)


Basic Information

Item Value
gene id tmem9
gene name tmem9,LOC107707676,LOC106572715,LOC107669678
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21776471 ~ 21780950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801685.1
TCACGTAACGTTATGACGACAACCCGGAAGGAAGCACAACATTTATTAAGGCGATCTTTGCTAAATAGAGCCAACGTTAGTGCGTAGCTTCACCCTAAATGCATAGATACAACAAACACTCTAGCTGCTTTTACAACAGCGCTGCTGGTGATTCTGCACCCGTCGTGCAAATCGTGTTACCTGTGGGAAAATGTCGTCTGGCAGGCAAGGATCCTGGACCTTGGTTGTACCCGCAATATTGACCTTCTTGTTGCTGGATGCTGTTGCTTTTGTACAGGCGAAGAACTTTGAGGATGTTCGCTGCAAGTGCATCTGCCCGCCATACAGAAACATCACTGGCCACATATATAACAGAAATGTGTCCCAGAAGGATTGTAACTGCCTCCATGTAGTGGAGCCCATGCCGGTGCCTGGCCATGACGTGGAAGCTTACTGCCTGTTGTGTGAGTGCAAGTACGAGGAAAGAAGTAGCAACACCATCAAGGTTACTATCATCATTTACCTGTCTGTCGTGGGTGCACTGCTGCTCTACATGCTGTTCCTGCTGCTGGTTGATCCTCTTATTCGCAAACATGACGCCTACACCCAGCCATTGCACAACGAGGAGGACTCTGAGGAGATGCGTCCTCCGGTGGACAGTGCTGGGGCCAAAGGAAACACAGTGCTGGAGCGGGTTGAGGGAGCACAGCAGCGCTGGAAAAAGCAGGTCCAGGAACAGCGCAAGACAGTTTTTGACCGCCACAAGATGCTTAGTTAAACCCTACAGTTGACCTTAAAGCCGGTTTAGAGTAGGTCACTTCCCTGGGCTCAGCGCTATTACACTGTCACCAGCTGCACTATTACTAACCTCTTTTGTCATTGCTGTGCACTGCACCCCCTGAATAAGTATTtccttaaaaatgtaaacacactgaTCTAACAGCAGATGTTTTTTGTTATATGTAACATTTTAGGCTAAAATGGAGTTGTGAAAAAACTGCATGTTGGCCCACTGTTAACGGCTAGAAATCATCTCCATTATTTCAGCAATTTGCAATGCAACAGATTTTGAATGTGTTGATAAAGTAACAACCATATTTCTCAAAAGTCAGACTTAATAGCTTTTAAGCTTCCTCATGATAATTTGTTTGTTAGCTTCTTGCTAATTTGGTATAATAAGTTGTTTGTCTTGTAGCATAATTTATAAAGTTATCTCAGAACAGGTAAGCTTTATGTATGTGAATGGTCAATCTAGCTATTTGGGTAGAAAGAATGCCCTACCTATTCTATTGTCAAACATTGCTGATTCCTATTACACCACTCATAATTTATTTATggttattattatcatttatttGTCCCCTGTTGCTGTACATAGTAAACTGGACATATTTAGCATCATTTGCACTAATAGATTAATTAAATGATTGTACATTTTAGGCTTTGTAATTTTAAAGTTTCTGTTGCTACCTTTAAAGATAGACCCAATATGTGCCTCTTTTTGTTTCTCTCCTTGTGTGGGtgaatgtgttactgtaaatTCACAGCTTGTAAAACAATAACAGATTGTAACATATAACAATCCATTTTGGTAGGTTTATCGTCTACCAGGTATTAGttgtttgtaaagaaaaaatgaaatctttTATCTTGAATGTACATGTGGAAACTGATCCGAAAATGGTTTGTTCAGTGAGGTAGGCACAAGGCCACATTTTTGTCCTGTATTTCACAGTAGCGTTTCAACATACTTTCCCATGCAAAGAGAGAAATGGAGAATGGGGCATATAACAGAGCTTTAAAGCAATCCTCAATGTCATCAATTCTCTGCCACTGGAGAATGTCCTAAATCAGTAAAGCTGCTGATAATGGGGTTAGATAAGTGTGGCAGAATCAGGATGCCGTATGGCTTTCAAGGGCCCTCATGTGTATCATTATGTCTCGCGTCCTACTTCTGAAGATGTCTGTTGGGGAAAGTTTATTACGACACACTGACTGACGTTACCTCACAATGTGAACTactgaagtttatttatatttatggattgttttattgttaaagtgtttttgtttagtATAATTTCATATCACTTGTAtcaatgttttgtatttatatttatctCCAGCCTAACTGGAGTATTGCACCACTCATGTCTATACATTCGCttgatgtgaaattaaaaaaatccccccaaaatgtaaaatataa
>XM_039801686.1
TCACGTAACGTTATGACGACAACCCGGAAGGAAGCACAACATTTATTAAGGCGATCTTTGCTAAATAGAGCCAACGTTAGTGCGTAGCTTCACCCTAAATGCATAGATACAACAAACACTCTAGCTGCTTTTACAACAGCGCTGCTGGTGATTCTGCACCCGTCGTGCAAATCGTGTTACCTGTGGGAAAATGTCGTCTGGCAGGCAAGGATCCTGGACCTTGGTTGTACCCGCAATATTGACCTTCTTGTTGCTGGATGCTGTTGCTTTTGTACAGGCGAAGAGAGACATGATTAAGAATTTCCCATCCATCCTGACACAGTTACTGTATTACAGTAACTGCCTCCATGTAGTGGAGCCCATGCCGGTGCCTGGCCATGACGTGGAAGCTTACTGCCTGTTGTGTGAGTGCAAGTACGAGGAAAGAAGTAGCAACACCATCAAGGTTACTATCATCATTTACCTGTCTGTCGTGGGTGCACTGCTGCTCTACATGCTGTTCCTGCTGCTGGTTGATCCTCTTATTCGCAAACATGACGCCTACACCCAGCCATTGCACAACGAGGAGGACTCTGAGGAGATGCGTCCTCCGGTGGACAGTGCTGGGGCCAAAGGAAACACAGTGCTGGAGCGGGTTGAGGGAGCACAGCAGCGCTGGAAAAAGCAGGTCCAGGAACAGCGCAAGACAGTTTTTGACCGCCACAAGATGCTTAGTTAAACCCTACAGTTGACCTTAAAGCCGGTTTAGAGTAGGTCACTTCCCTGGGCTCAGCGCTATTACACTGTCACCAGCTGCACTATTACTAACCTCTTTTGTCATTGCTGTGCACTGCACCCCCTGAATAAGTATTtccttaaaaatgtaaacacactgaTCTAACAGCAGATGTTTTTTGTTATATGTAACATTTTAGGCTAAAATGGAGTTGTGAAAAAACTGCATGTTGGCCCACTGTTAACGGCTAGAAATCATCTCCATTATTTCAGCAATTTGCAATGCAACAGATTTTGAATGTGTTGATAAAGTAACAACCATATTTCTCAAAAGTCAGACTTAATAGCTTTTAAGCTTCCTCATGATAATTTGTTTGTTAGCTTCTTGCTAATTTGGTATAATAAGTTGTTTGTCTTGTAGCATAATTTATAAAGTTATCTCAGAACAGGTAAGCTTTATGTATGTGAATGGTCAATCTAGCTATTTGGGTAGAAAGAATGCCCTACCTATTCTATTGTCAAACATTGCTGATTCCTATTACACCACTCATAATTTATTTATggttattattatcatttatttGTCCCCTGTTGCTGTACATAGTAAACTGGACATATTTAGCATCATTTGCACTAATAGATTAATTAAATGATTGTACATTTTAGGCTTTGTAATTTTAAAGTTTCTGTTGCTACCTTTAAAGATAGACCCAATATGTGCCTCTTTTTGTTTCTCTCCTTGTGTGGGtgaatgtgttactgtaaatTCACAGCTTGTAAAACAATAACAGATTGTAACATATAACAATCCATTTTGGTAGGTTTATCGTCTACCAGGTATTAGttgtttgtaaagaaaaaatgaaatctttTATCTTGAATGTACATGTGGAAACTGATCCGAAAATGGTTTGTTCAGTGAGGTAGGCACAAGGCCACATTTTTGTCCTGTATTTCACAGTAGCGTTTCAACATACTTTCCCATGCAAAGAGAGAAATGGAGAATGGGGCATATAACAGAGCTTTAAAGCAATCCTCAATGTCATCAATTCTCTGCCACTGGAGAATGTCCTAAATCAGTAAAGCTGCTGATAATGGGGTTAGATAAGTGTGGCAGAATCAGGATGCCGTATGGCTTTCAAGGGCCCTCATGTGTATCATTATGTCTCGCGTCCTACTTCTGAAGATGTCTGTTGGGGAAAGTTTATTACGACACACTGACTGACGTTACCTCACAATGTGAACTactgaagtttatttatatttatggattgttttattgttaaagtgtttttgtttagtATAATTTCATATCACTTGTAtcaatgttttgtatttatatttatctCCAGCCTAACTGGAGTATTGCACCACTCATGTCTATACATTCGCttgatgtgaaattaaaaaaatccccccaaaatgtaaaatataa

Function

symbol description
tmem9 Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM9 (transmembrane protein 9).

NR:

description
PREDICTED: transmembrane protein 9

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801685.1 True 2188 mRNA 0.40 6 21776471 21780950
XM_039801686.1 False 2149 mRNA 0.40 5 21776471 21780950

Neighbor

gene id symbol gene type direction distance location
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 29754 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 156270 21607339 ~ 21620201 (+)
LOC120559688 NA coding upstream 221276 21553252 ~ 21555195 (+)
slc26a10 LOC103368469 coding upstream 271551 21498706 ~ 21504920 (+)
arhgef25a LOC102292298,LOC100705949,LOC101484609 coding upstream 303097 21417136 ~ 21473374 (+)
ribc1 NA coding downstream 42568 21823518 ~ 21827890 (+)
idh3g idh3g coding downstream 241884 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 330037 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 403346 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 422141 22203091 ~ 22213864 (+)
G51811 NA non-coding upstream 198216 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 395222 21379001 ~ 21381249 (+)
G51739 NA non-coding upstream 400208 21376031 ~ 21376263 (+)
G51738 LOC104956875,LOC101062677 non-coding upstream 409441 21366676 ~ 21367030 (+)
G51737 acvr1b non-coding upstream 409894 21366301 ~ 21366577 (+)
G51900 smc1a non-coding downstream 31662 21812612 ~ 21813631 (+)
G51902 smc1a non-coding downstream 38915 21819865 ~ 21820675 (+)
LOC120559724 NA non-coding downstream 114391 21895341 ~ 21896456 (+)
G51921 huwe1 non-coding downstream 118174 21899124 ~ 21900231 (+)
G51922 huwe1 non-coding downstream 119494 21900444 ~ 21901003 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 56348 21717109 ~ 21720123 (+)
G51804 NA other upstream 217122 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 412041 21361290 ~ 21364430 (+)
G51716 NA other upstream 485509 21289588 ~ 21290962 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 1243902 20445971 ~ 20532569 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 2267 21783217 ~ 21807914 (+)
G51926 NA other downstream 122592 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 265813 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 309247 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 775379 22556329 ~ 22560328 (+)

Expression


Co-expression Network