sox18 (LOC104941087,LOC103385144,LOC107094976,LOC100711530,LOC101485236)


Basic Information

Item Value
gene id sox18
gene name LOC104941087,LOC103385144,LOC107094976,LOC100711530,LOC101485236
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6493569 ~ 6502180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801741.1
GGGTCGGTTAAATCTGGCCACAAGTTTCAAAACTTTCAAAgagggcagacagacagagagacggtGAGTTGGGCGTCCCGTGTGACGGAGGGGAATCGAGCTTTGGACAAACCGCTGCACCACACACTCCAAACACAAACTGTTGTCTtttgagagagaggaaagaagaaaaaaaaagagtgaagaaaagaaagaggcagAGTCATTGTGGATCATTTACAGAGGGGAATATCCTGCACCacaacttgtttgttttctctttctttctcgtCTTCCACCTCCTCTCAGATCTCGATGCTTTGCTTTGGGATTTGTGCTCCAAATCCATCAGATTCCTCTCTTGATCTTTCTCTTCGTCAACCGAAACATTTCGAGCTGCAAATTTTTTCCAGAACTTTGCAACCCAACAAGCTGAGACAGACGTTTGCAGGATTTCACTTGGACTAAGAAATTGAATCCAAGCCCGGTTCTGGAATGAATTTAACCGATCCCAGCTTGTCTAGAGAGACTCTTCTGCATGCCAGCCGGATGTCTCTCGGGGGCCCCTGGGCGTCCGGGACCCCGAGCCCTGCTTCTGATTCTGAAATAGGTTTTGAGCAGAACCTCTCCGGGGACTGCGGTTCTCCCGATGGCCTTGGAGCCGGGAAGATGAGGAGGACAGAAGCGAGGATTTCTCTGACACCCAGTTCAGGGGGACAGAGTCCGGACCTGACCCAGGCAGGAAGTGTGTCGGCAGGCACGGCCGACGGGAAGGCTGTGGGGGGTGAGACGAGGATCCGCAGGCCCATGAACGCCTTCATGGTCTGGGCCAAAGATGAGAGGAAGCGACTGGCCGTGCAGAACCCTGACCTGCACAACGCTGTGCTCAGCAAGATGCTCGGTCAGTCATGGAAGGCCCTGAGTGCTACAGACAAGCGGCCATTTGTGGAGGAAGCAGAACGTCTCCGTGTCCAGCACCTCCAGGATCACCCAAACTACAAGTACAGGCCCCGTCGCAAAAAGACCACCAAAAAACTCAAGCGAGTTGAACCGGGGCTTCTGCTTCACAGTTTAGCCCATGGCGGGGCACCAGGCCTTGGATTAGGACCTGGTATCAGCCCCTTGGGTGCAGAAAGTGTCTCTGGAGGTTCTGCCTATGGTAATGTAGGTGCCCACCCTTCACATCACCATCACTCCCACCATCTTCTGCACTCTCTCGGGCACTTCAGGGACCTCCAGGCCCCAGGACACCTAGAGCTGGAGAGCTATGGCTTGCCCACTCCGGAGATGTCCCCTCTGGATGTTCTGGAAGATGGAGCTGGGGAATCTGTGTTTTTCCCCCAACATATGCAAGAAGAGGCAGGTCTGGGAGGTTGGAGTGGCTACCACCACCACCTTCACCATCCTAACCAGCATTACAGCCATAATTACAACAACCACAGTCATCACAGCTCCATAAATGGCGCAGCAACACACAGTTCAGGAATGAGTGTTGGTGCCAGTTCAAGCAACTGTTTGAACTCCAATTTGAGTCCAGGTAGAAGTTCCAGAGTTGATTCTAGAACGAGTTCTGTCGAGTCAAATATGACGTCGAGCATGAGCTCTAGGTTAAATCCCACCTCTGGTCACCACATTGCCTTGCGGAATCCTGTAAAGTGCCCACCACCTCTGTCCGACTGCTCCTCCCCTGTGTCTTACCCCCAGCCCTCCATCAGCCTCCCTGAGCCGATAAAATCCCACCTAACGCCACATCAATCCACTGCTCCTGTCGGCTACTTCAGCCAAATGTATGGGAACAGCGCTCCAAATGCTGCGTATTACATGCCCTCTCAGCTGGGGCAGCTTTCACCTCCTCCTGAAACTTCTCCTTCTTCCTGCTCATCCTCCTCCATCCCCACATCCACCTTCCCTCCTCCGTTGCACTTAGACCCTTCAAATCCAGAGTCCTCCTGCCATTTGGGATCTTCTTCTGCTGAGTTCTGGTCCGAGGTGGACAGGCATGAGTTTGACCAGTATGTAAATGTCGGAAGGAATCGAGAGGAAGCCTACGGGCGCGGTGGGGGCTGTGGGTCGAAAGTCTTGAGTGGGCGCAGTAGCGTAGGTAGTAGCATGAATAGCAGTATTATGAACAGGGATGTCAGTAGCATTTTGAGTGGTGCTGGTGGCTGTGATGAAGAGAGCAGCCCTCTTATATCTGCTCTTTCTGATGCCAGCAGTGCTGTCTACTACAGTGCCTGTATCACTGGATAAATACTCCATGATCTCATCTCTCGATGTGTACCTCCTTGCGTACTGCACAGTTTGGTTTGGTTCATTTGAACCATTGTTACATGATCTGGAGGAAGTGTGTTGGGAACATTAGTTTTGGCTCATATTCTTAGCCATTGTCATGCCTTGCTTGTCTCTCACAGACTCCAACTCTCAATTTAAAAGCTTTTCTTCATTCTAAAAAAGAAAGATGCAGACAAGTGTTTTTTATCATAGCAACTTTTACTAGAGCTAGAGCTGGGTAGAGACAAAAtacagttttctttttaaaagtgtgaactggaaaaataaaaacttaactGGCAAAGAAAGCACTTttgtcaaataaaagaaaaatgaaaacgctAAATACTTCGTTTAGATTGATTAATGCATCCCTGAACATTATCTTGAATGATTGTCTGGCTAGCTAAGCAGCATTCCTTGACCTAGTGTGGCTAGCTGAGATTGTGTTAACTTAGTAACTAGATATGCATGGATTACTAGTTCATGGCAACTTTTAGGCAGAAGTTCTAGCAGGAGGTTTTGGCTTCTGCTGAGCAATTGCAAAATTAGCTACTGTCAGTCACTTAGCTAGCATACgtaatcagaaaaaaaactcaccATTTCTGTTGCATCACTGCCAGCTTGATGCTCTTTATCAAGATGAGTGCGTGTTAATCCAAATGAATACGGTATCACAGAAAGATCAGAACTTAATATTTTGACTTTAGGCActcaaggaaaagaaagaaataggcctatgtatgccaggcagaaaaactaaaatagcATTGTGTGTTTTCACCAACTCATAAAGGGTGCTCGgtgtgtgttagcatgtgtAATGCTAATAAACCAGGAGTCTTTATCAATAGCTGGAAACATTTATAACCTGGAAGCAGTTCTGGTGGCTACATAGTTGGAAGGATTCAGGGATGTAGGATATCAACTAGTTAAATTGTCTACCTGCTTCTACCTGTTCCACAGGTTTCGTTTCTCTGCACTCTAACCCTTTCTGGTGATAGACAGTACATGCTGTAGGAAGATTACGCAAGCAAAATGATTTCTTTAATTGCACTGTGTGTACTCTGGTCAACAGAAAAATCCACAGCTATGACAAATCTGAATTTTAAGACCATCTCGTATCATTATTGACCTTTAATCTCAGGACCAGACAAATATTCATCTCAACTGAACTTTATGAATTTAATTTAATCCATTCTGTCCATTAAATGGGAACATGAAGAACAATGAGAAATTTGGGAgatggtcagagagagagagactggataGGAGAGACTTGATCCAGCCTCCACATGTATATCTCAGCAGTGTTGTCGGGAAAGCCTTGGCCACGGCCCCGAGCAGACCACTGATGTCTCCCACAAACTGTAAGGATGTTTTACAAGCCGGgtcggttttttttttttttttctgaccgtGATACATGCCGTTCCCTCTCGGTCTCAGTCCATGACAGGGCCTCATGTCAAACTCCCTGCCAAAATATGCAAGTTTTAAGTTGCTTTGCTTCCTGGCAAACACGGATATGTTGATGAATCAAAGATCATTCTTTATGACCAGTAAGCCTCTCTGGTATAACAAGCATATCACTTGTTTaaacaaaatgtcttttttttttaagttaaaaagtGTAATTTAGTTCTACAAATAACAGAAGATTGGGGTCAGCAAATAAAGTGCTATTGGATCGAGTCTAAAGCTTCACTTTATACTTCAAAAATCATCATGTCTGTAAGGTCTGCATATTTGCAAGTTCGTGCAAAGCAACGTAGATATTGGTTAACCGTTTGGTTACAATTACAAATTGTTCCATTCTTAATTTCATTAGAACGTTTATGGATAATTTTTCATGTGGTAAGTCTTATTATTTTTGGAAATCTGGTTTTGATGTAGCCTttgactgtatatatatatatatatagatgctATGCCTCTTGGCAGCATGTGAAGGAGAAATTGAGACTATGAAAAGTTCTCTTTGCACTGGGTTTAATGTCTTAGCTGTATAGAAGGAACACTACTTATTAAAAGCCAAACAATTTAAATGTTGTACAGAAAggactgtgtttttttaatgtttcttttattaaaggaatagtttgacattttaggacatgtgtttgctttcttgctgagagttagatgagaagattgatgccaTTCTCGTGTCTGTCTTTTAAATACGGAACAGCTggcctttttttcttcaaaatcaAAACTTGGTTGTGGACCAATTCAATTAAAGGTGTTAATTATGGACCGATCCAGACTAGCTTTatcaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctaaacTATGCTAATCGCCTCCCGGCTCCAGCTCCGTACTTATCCCACAGACATGACAGTGACAATGACAGTCACACTCTCAATgtgaataagcgtatttccccaaaatgttaaactactCCTTTAAAGCATTGGAGCAGTGCGTTTCCactgctcttttttttgttgttcatccaaaatgtatgtgtattgtgtgtgtaaactTGCCTTCAAAAGGAAATCTATAAGTGTAAAGATCTCTTGTAGATCTGTATGGGTCTTTAATGGGTTACATGTTCCACTTAGCTCTACCAGTGACACCAGCAAACCCAGAAATGTTCCCTCCCACACCAATGTTATTTACCTACACtgctggaaatgaaaatgacaAATTTATTCGGGCTGAGAAAATCAAAATCCACAGTTGTAGCCACTGTAGAGGTCTCTCTGTATGTGAAGGATATATGCTGTAATATTTATGAATACAGTGGGAGCAAAAACCAGAAGTCTCTCTTGAAGGATTTAGCCTGCATCTGTTCTGCATTAGTCCTACAgacaatcctttttttttttttttacatgaaacaGTAGAACTAAATTGTGTATCTTGTACAGTGAAACCAGTTATATTTACCACACCGTTACTTGTGGCCACCATTGGTTGAAAACAGAGCAACAGTAGATTTTTCCAAACATTTCCTCTAGAGGATGGAGCCGCAGAGAAGCGGCAGTTCAagcaaagtataaaaaaaaaaagtacttctACATCTGCATTAGACATTCTTCTCTGTTGACACCAAACAGCCTTGTTTCCATTCTAATTTACTGTGACACACAAAGAACatcagagagacaggcagggcttcttattttttttttttttttgagtcgTGCAATAACTCTGGGGCTTTTGGTAATAattatctgaaaaaaaaagaaacacccaAGATATTGGGATTAAAACAAAGGACATTTTCTCAGCAGTCATATAACGACAAATTAAAAGCAGGATTTTCCCAGAAGTGTAGTTGTGATGCTTCTAAATCTGTCTGACAGGGatgatttttacattttgtgcagagaatagttttgtttgtgttcataTTTGAGAAATGTGGGTTGGCTGTAATTGGAAAATGGatggaaaataatgtgacaaaaTAAACTCTTCTAAGATTTCA

Function

NR:

description
PREDICTED: transcription factor Sox-18B-like

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801741.1 True 5727 mRNA 0.43 2 6493569 6502180

Neighbor

gene id symbol gene type direction distance location
rgs19 LOC103373111 coding upstream 100067 6346108 ~ 6393502 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding upstream 220889 6262023 ~ 6272680 (+)
oprl1 oprl1 coding upstream 258726 6063850 ~ 6234843 (+)
npbwr2b LOC103358254,LOC104941021 coding upstream 743337 5747209 ~ 5750232 (+)
LOC120558307 NA coding upstream 1106309 5376303 ~ 5387260 (+)
xkr7 xkr7,LOC103148205 coding downstream 77006 6579186 ~ 6683911 (+)
cables2b LOC101464377,LOC102312634,LOC102204736,LOC100701228 coding downstream 227522 6729702 ~ 6774102 (+)
LOC120558797 NA coding downstream 352997 6855177 ~ 6863948 (+)
LOC120558795 NA coding downstream 367399 6869579 ~ 6934548 (+)
LOC120558791 NA coding downstream 524897 7027077 ~ 7066173 (+)
G47482 NA non-coding upstream 65571 6427468 ~ 6427998 (+)
G47460 NA non-coding upstream 238995 6242925 ~ 6254574 (+)
G47441 NA non-coding upstream 256743 6236194 ~ 6236826 (+)
G47428 NA non-coding upstream 636571 5856565 ~ 5856998 (+)
G47423 NA non-coding upstream 731488 5761869 ~ 5762081 (+)
G47503 NA non-coding downstream 130689 6632869 ~ 6688714 (+)
G47504 NA non-coding downstream 144475 6646655 ~ 6721672 (+)
G47508 NA non-coding downstream 220559 6722739 ~ 6725198 (+)
G47516 NA non-coding downstream 330991 6833171 ~ 6915980 (+)
G47517 NA non-coding downstream 343868 6846048 ~ 7305481 (+)
G47444 NA other upstream 292975 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 1718211 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 2627771 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 2978811 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 3188932 3279361 ~ 3304637 (+)
ccm2l ccm2l,LOC102778549 other downstream 195813 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 1610261 8112441 ~ 8116228 (+)
pkig pkig other downstream 1840570 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 1975943 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 2152232 8654412 ~ 8662891 (+)

Expression


Co-expression Network