rnd1b (LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592)


Basic Information

Item Value
gene id rnd1b
gene name LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22203091 ~ 22213864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801754.1
AGTGGCAAATTCAATCAGATCAACTGCGAACATCCTCCGAGAAACAGACACCGGGACGCTCGAGCACACTGGGACGATTTCTGGGTTGTTCTGCctctagttttattttatttttacattttctgcaACAAACACTGGGTCATCATTAACATTATGAAGGAAAGGAGAAATACACAGCCGCTGGTGGTGAGATGTAAACTGGTTCTTGTGGGAGACGTTCAATGCGGAAAAACGGCGATGTTGCAAGTCCTGGCGAAGGATTGCTATCCAGAGACCTACGTGCCCACGGTATTTGAAAACTACACCGCCTGTCTGGAACTGGAGGAGCAGCGAGTGGAGCTAAGTCTGTGGGACACTTCAGGTTCTCCATACTACGATAATGTAAGGCCCCTGTGCTACAGTGACTCAGATGCAGTTTTGCTGTGTTTTGACATCAGCCGTCCTGACACTGTGGACAGCAGTCTGAAGAAGTGGAAAACTGAGATCCTGGATTTCTGTCCAAGCACACGGATCCTGCTCATTGGCTGTAAGACCGACCCAACCCTTGCGCGCTGAGATGTAGACGTTTTGAACAGCACGCTTCATCACTCATCATATGTATTGCAGGGTTCTGCTATGGCCAAGCAGCTGGGTGCAGAGGCCTACCTGGAGTGTTCAGCGTTTACCTCAGAGAAAAGCATCCACAGTGTGTTCCGCACGGCTGCGATGGCCTGCATCAACAAGCTGCAGCCTCTCCCGAAGCCCAGCCCCACCCGCCGCCTCTCCAAAAGACTTCTCCACCTGCCCAGCAAGTCTGATTTGCTTTCCTCTACCTTCAAGAAAGAGAAGGCCAAGAGTTGCTCGGTCATGTGAGTGGAGACCTCTTGGGTTACAGTCCTCACACGCAACTCCCAGCCCCTGCCTCTTTGGTCTCGGGGAAGGGGGGGTGGGCACGATGGTTTTATCAGGGCTTCCTGCTGAATCCTTCCCTCACCCCCCCAGAAACCAAACATCCCTCAGAAGAGGTGGACACTTCGCTGTCCACTTGCTCCTGAACCTTTTAGCGCACACACATCTTTTTCCACTACTGTTTATCTTgctttcaaacaaacatcaGTCAAGGTTTGATCATCAATCGTTTTTTCGCCTGTAAACAGTATGCAACTACAATGGTGTTACATCTGTCTGATTTTACTATCTCTAGGCACATGTTGATTTTGTCCAAATTGGAAATGTGCAACATGTGACGATTAATCTTGTGATGTAAAAGCCTCCGAGACAATTCAATTGGTATAAGTACAAACACAATTTTAGCATGAAACCGTCAGGAATTAGCAACATCCTGTACATCCCTCTTAGTAAGGTGTGTGAGGTGTGAAATAGCTTATCACTGGTGTCCCCATTTAGGCCTTTGAAAGCACAGAGAGTAAAAGGAGTAGTGGGACAAACCACAGTGAAGAGCTATTACATATATAGAGCTGTTCTCATTGCCTCATTGGTGATGAGAGCAGGGATAAGAGCCGTGAGTGCAGGCTGCTGCGCAGACAGCAGTCTAGACTAATTCAACCTGCATGGATTGTTGATGCATGGTTGTGTAGCTCTGGACAGCGCTGCTCCACAGGTTTCAGTGGAGGAGCCTGAAGAGGCTCTGTGTGTacaaattgacaaaaatgtggacatgcaaaaaaataaagagaagtGTACTTGGGCTTCCGATGTCTCTTCTGTCACAGCTGGagtctattttaaaatactaTTTTGGTGACGGGACATACACATTTTAATGGATGAGAAAAGATGCTTTTATATAAAAAGCATGACAGTTCGATGCCGAGCtgtcaagtgttatttattAAGCTGTGGCTGGTTATTGTTGCCAGTCAAAGTGTTATGTGGCATATTTAAAAGCATAGGGATAATGCCTACCTAAGTCAGGCTGACTACTAATGGAAAAAATCTGATTTGCAatttcaaatattcttcagaaaagATTTGTAGCATTGCGTTCTTCACAGTTTTTCAATAATTCTCAAATGGTATGCAGTTTTGAAAAATGCCTTTTCATATAATTTTCCCAGAAGTCATTGAGATTTTTTGACTACTGTAATATGCCTGTGGATTTCTCTCATTTGCAACAATCCAATGTAGCACCCCCAACCTGACTCTACTCTTCCAAGGTGACTCTAATTTTTGTGTTGTACACTCTTGTTATAATCTGCCTCCAATTAGCAGCACTTACTGTAGGTTACAATGACTACGAAGCAAAAATTACAACCTTTCGGAGCTTAAATCTTTGGCTTaatggttatgtgtgtgtgcagcattgATCTCTGTGCTTCTAACCATAAAGCAATAATGATTTAAGTGCTTGTGATACAAGGTAACCTGTGCGGCAATAAAAATGCAGCTTTGTGATTACTGTCATGCTGTAAGCGCTCCATGGACATCCTTGTTATGGACTGAAACCATCTCTGCTGTACAAAGAGGCTGCTGATCTGTGTTTGGCCCTCCTCCTCCGTGTAAGTAGCCACTGGTATATAGAATAACCAATGACGATGTCCTGATATGAAATAGATAGTTCATGATCAAGAGTGAACAACGCTCTTCGAGTTGGAGATGCTAGACTTTGGTGTCAATTTTACATAATCATAATAAGAAAGTATTGTGGCAGTAGGACTTAACTAAGCTGCTGTGTGAGTGGGTTGACTGTGCAGTATATGCTTTTAAAATTGGAAATCTACTTCAAAAGTTTAACAATCATCTTGTAAAAAGGGCTagtgtgtggaaaaaaaggaaatcctGTGAGGACAGCAAGTAATTAAGATACACAGGCTGGCCCtgtccaaagaatgctatttttccattatttgtttatttggttgatgtgtattttcttttttccttttttggaaTTCAAACGCATGATGTGAGTCCCGGTGTTGTTTTGGAAATATCTCTCTGAGATGGTTGCGTCTTTATGGAGCTGTGGACTGCCCCCATTCGTTGGAGGAACTTAAAGGGGTGAATTGCACAAAGGCTTCCAGTTCATGTTCACACACCAAATTCCTAAGCATTGCCTAGCAACAATTCAGCGTAGGAAACAGAGACCAGCTCTTGGGTTGGTTGTGTGGACAGAGAGGGTTGGCTCACAAGCAGACATCCCAACATCCATTATTACAGCGTCAGTTATGCATTTATTGCCAgacctgttaaaaaaaactaaaaaaacatttcttgatATTTTTTAGGGAGCTGATGCCAGGTCTTCTGATGATGGGATAGATGGGTGGCTCACAGACCATGGCAGTTACAGTAATATGCAGCCTTTGTGTTGTAGTCAGTGTTTGGTACAATGGTGCAGTCAAACTCCTAAGCATGTCCTATTAAAGTTGTATGATTGTACATACTGTCTCTTGTTTTATAATCATTGTAAGACATCTTCAAAGATATCTCATGAAAATATTGTTGTTGATGTGAATATTTATTTGGTAGctatttttgccttttttattgacatgtttgtttAAAATCTATTTTGGAAAATtgacttttagttttttgtttttgctgtgttaAATAAAGCTTGCCGTGTCTGGCACCCTTGAA

Function

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801754.1 True 3585 mRNA 0.43 5 22203091 22213864

Neighbor

gene id symbol gene type direction distance location
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding upstream 3981 22184296 ~ 22199110 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding upstream 83482 22110987 ~ 22119609 (+)
idh3g idh3g coding upstream 174797 22022834 ~ 22028294 (+)
ribc1 NA coding upstream 375201 21823518 ~ 21827890 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 422141 21776471 ~ 21780950 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 26618 22240482 ~ 22244763 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding downstream 33091 22246955 ~ 22248730 (+)
LOC120558509 NA coding downstream 174685 22388549 ~ 22397004 (+)
LOC120559492 def6 coding downstream 287592 22501456 ~ 22515546 (+)
ppardb ppard coding downstream 303375 22517239 ~ 22524940 (+)
LOC120558498 NA non-coding upstream 26680 22173144 ~ 22176411 (+)
G52035 NA non-coding upstream 65759 22111469 ~ 22137332 (+)
G52031 naa10 non-coding upstream 96146 22105645 ~ 22106945 (+)
LOC120558642 NA non-coding upstream 116858 22085266 ~ 22086233 (+)
G52006 NA non-coding upstream 171572 22031209 ~ 22031519 (+)
G52060 LOC104967533,LOC103368342 non-coding downstream 21292 22235156 ~ 22237182 (+)
G52064 NA non-coding downstream 40431 22254295 ~ 22254973 (+)
G52054 NA non-coding downstream 126519 22340383 ~ 22346646 (+)
G52179 NA non-coding downstream 260366 22474230 ~ 22476314 (+)
G52185 NA non-coding downstream 266679 22480543 ~ 22484101 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 108201 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 142446 22046763 ~ 22060645 (+)
G51926 NA other upstream 299014 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 395177 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 482968 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 342465 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 348290 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 628180 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 777388 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1532501 23746365 ~ 23765165 (+)

Expression


Co-expression Network