pm20d1.2 (pm20d1)


Basic Information

Item Value
gene id pm20d1.2
gene name pm20d1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13284381 ~ 13292312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801794.1
ACTCATTCAGTCGGCACCGGTCTGCACACCGTCACAGTGAACGAGTTCCGCCTGTcacaagaaacaacaacaatgacagACTCAGGTCCAAAGTTCAAAATTTTCAAGTgtttaaagattattattagtagttttCTCATTACAGTCCTATTGCTATTTACAATAGCATCCATCAGGACTCTTTCACTGGACGTAAATGTCGGACTTCAACTCGCACGTTGGGAAAAGACGAACAACATTTCACTGGTAATAGACCACCACCAGAGAGAGGAGCTTCTTGCACATTTTAAAGAGGCTATCCGGATCCCCACAGTGTCATTCTCAGAGAAGGAGAGCAACACCACCGCACTACGTGAATTTGACAGGCTCCTCCGAAAAGCCTTCCCAACCATTTTCTCTTCAAGCTTGGTTCGTCATGAATTGGTGGCAAACTACAGCCACCTGTTTTCGGTGCAAGGATCACAGCCTGACCTGGTGCCATACCTGCTGCTGGCCCACATTGATGTAGTACCTGCTTCAGAATCGGATGGCTGGGAGGCCCCACCATTTTCTGCCAAGGAGATAGATGGCTTTATCTATGGTAGAGGGACCATAGATGACAAAAGCCCTTTAATGGGAATACTTCAGGCATTGGAGTACTTGCTGATAAAAGGCTATGCTCCACGCAGAGGATTTTACATTGGTCTTGGTCATGATGAAGAAgtcaGTGGTTACAAGGGGGCAATGAACATTGTGCGTGTACTGAAGCAGAGAAGTGTTCAGCTGTCGTTTGTCCTGGACGAGGGCCTGGCTGTACTTGACGGAGTCATTAGTGGTCTGGAAGGACCTGCTGCACTAATTGGGATAAGTGAAAAGGGTTCAGCCACTGTGAAGCTTAGTGTGTCTATGCTCCCTGGTCACTCCTCGATGCCTCCCAGTGAGTCCAGCATTGGGATCTTGGCTGCAGCAGTGAAAAGACTAGAGGAGAACCCTATGCCGAGATTATTTGGTCATGGGCCTGAACGTGGCACATTTGAGCATCTGGCGCATAAGTTCGGGCTCCCAATGAAGTTTATAATGTCAAACTTGTGGCTGTTCGCCCCACTAATGGGCAGGGTACTTGAAAGAAAACCAGACACTAATGCTTTTGTAAGGACAACCACAGCAGTCACCATGTTTAATGCAGGAGTTAAGGTGAATATCATCCCTGCCCTCGCTGAAGCTTATGTAAATCTACGAATCCACTCAGCACAGTCATTACAAGAGGTCCTGGACCTAATCCAGTCTGCAGTGGGAGACCAACGAGTGAAGATGGAGCTTGTTAATGGGTTTGACCCTCTGCCTGTGAGCTCTGCGGATGAAAAGTCCTTTGGCTTCCAGATCATTAAGAAAACTGTGCTTGACATTTTTCCAACAGTTACAGTTGCTCCAGGTATCTGTATTGGGAACACAGACAGTCGGCACTTCAAAGACCTGACAAATGATATTTATCGCTTTGCCCCTGTCTGGTTTAAACCAGGTGATGCTCAGAGaTTCCATGGAATCAATGAACGGATTTCCAAAAAGAACTACGAGGAACTTATAGAATTTTACTTCAGTCTGATTCAAAACTGTGACATTCAGAAGCTCCCTGAGCCCCACAGCTCTGTCCATGAACTCTAAGGAATATACAATATGGGTAACCGGTCTAACAAATGCAATTCAAAAGCCTGTGTTATTGTTAGTCTGAATAATTTCAACAGCAACCAACAGGACCTTGACTTACTGTATAGTCACTaaattttaaacaaaatgtgATTCTGCTTTTTAGAGCCAGGAGGTTGCATTTTCAATTGCCCTGTAATTGTAGCTTTACAGTAAACAACGGATGCTGTTTAATCTTGTTTGATGACATACGGTTTTGACTTTGTTGCAATGAAATGATCACGGCATAACTATGTGAAGCTCCTTTGCATTTGTGATAAAGATTTTGCGGAAGACTGCTGTAATGATTTATGGATGTATTTAGAACTGATTTTTGTTGGGCTGCTAATAATACTGTAGTTCTTAAAATGATGATGGTTCATATAACTTTAATGAAAATTGCTGcataaatatttttcttcaGACAATATAAAAGTATGCATTTTCTGTGAAAATGCTGAAGGGTGatattttttgttatgtttgcTGAGTGAAGTACAGTAGTTTTTAAAGAATtctgtaatgttaaataacTGACTATTTAAAATGAATTGTGATTTGAATTTGCACACCATTTTTAGACAGGCattgtttaaaattacaacaaaactTTTAATGATA

Function

symbol description
pm20d1 Enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides. Involved in several processes, including amide biosynthetic process; cellular amide catabolic process; and negative regulation of neuron death. Located in extracellular exosome.

NR:

description
PREDICTED: probable carboxypeptidase PM20D1

GO: NA

KEGG:

id description
K13049 PM20D1; carboxypeptidase PM20D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801794.1 True 2283 mRNA 0.42 13 13284381 13292312

Neighbor

gene id symbol gene type direction distance location
lemd1 NA coding upstream 130 13272566 ~ 13284251 (+)
LOC120558998 LOC104924681,LOC104961357 coding upstream 25060 13255847 ~ 13259321 (+)
LOC120558583 NA coding upstream 41088 13237470 ~ 13243293 (+)
dnajc11a dnajc11,LOC104924676,LOC100696684,LOC102780517 coding upstream 49372 13222993 ~ 13235009 (+)
LOC120558505 LOC103354934,LOC104924675 coding upstream 363578 12911776 ~ 12920803 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding downstream 155996 13448308 ~ 13451907 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding downstream 181954 13474266 ~ 13499442 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding downstream 234996 13527308 ~ 13531488 (+)
LOC120559547 mitf coding downstream 272313 13564625 ~ 13605435 (+)
LOC120559296 ppp4r2 coding downstream 350317 13642629 ~ 13649896 (+)
G49346 NA non-coding upstream 355910 12928256 ~ 12928471 (+)
G49334 NA non-coding upstream 356201 12921005 ~ 12928180 (+)
G49330 NA non-coding upstream 443816 12828581 ~ 12840565 (+)
G49314 NA non-coding upstream 500593 12780615 ~ 12783788 (+)
LOC120559802 NA non-coding upstream 551964 12726600 ~ 12732417 (+)
G49461 NA non-coding downstream 14528 13306840 ~ 13307572 (+)
G49474 NA non-coding downstream 73419 13365731 ~ 13378409 (+)
G49502 NA non-coding downstream 140287 13432599 ~ 13433217 (+)
G49508 NA non-coding downstream 152827 13445139 ~ 13446735 (+)
G49562 NA non-coding downstream 324565 13616877 ~ 13641874 (+)
LOC120559134 dvl1 other upstream 398157 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 439947 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 626073 12652384 ~ 12658308 (+)
G49209 NA other upstream 825942 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 980978 12283427 ~ 12303403 (+)
G49538 lmod3 other downstream 240078 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 366420 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 820703 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 913285 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1272555 14564867 ~ 14567456 (+)

Expression


Co-expression Network