LOC120559796 (LOC104924663,LOC103354782)


Basic Information

Item Value
gene id LOC120559796
gene name LOC104924663,LOC103354782
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12708643 ~ 12722596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801817.1
ATGGTGTACCAAGAGGTTTGGTCCAATGCTGCTGTGGGCCAACAGGAGAGGGAAGGCTGGGTGGGGGCAGAACAGAAGGGAGAGGACAGCAGGGCGCACACTCGCCCAACACCTGCACCTGGTCCCTTGATTCACACTCCAACAACTCCCTTTCAAGGATCAATGGACCAAGCTCTTGCTCACATCACGGTGATGGTTGCTGCCATCCAGGCTTAAACTTTTTTTTGGAAAGAGTGGAACAAGCATTCAGGGATcagctgtcttttctttttttttttgtaatgttgaATGGAAGAAACGCTAACAGCGACTGATTAGGCAGCTTTTTTTCCCTGTCTTTCCCAAGGGGAATTTGCAAACCTATCGGATTGTTTTATGCCTGCGCAGCGCGGCTGAGAGGAGATTTTCCAGCCCAGCTCCGAGGCACAAAACGCGGGGAATGCAGCGGTAACATCCCGCAACTTTTTGGATCTGAGATCTCGTCGCGGGTAGGCTATCGAGAAAGTCAGCAAGCAAAAGATTTAGATCTCTGTGGGCTACCTGCATGACCGTTACCATGACAGCATCTGGAGCCCAACTCCTCCTGTTGGCCTTATGTGTTTACAGAGTCTCAGGCCTGCAGCAGTCTTCTCCGCGGGTTCGCCTCTCCTTCAAAGAACTGATGGACACGAGGGCAGCGCGGCCCTTCAGTTTCTCCTTCAACACCAGCGACTACCGCATCCTCCTGATGGATCAGGATCAGGGCCGTCTGTATCTGGGCAGCCGGGAGTACCTGGTGGCTCTGGACATGCACAATGTCAACAAGGAGCCACTCATAATTCACTGGCCAGCATCTGCTAAGAGAAAGGGAGAATGTCAGATGACAGGAAAGGGAAGACAGGGTGAATGTGCCAACTTTGTGCGGTTGATAGAGCCGTGGAACCGCACCCACCTCTACACCTGTGGAACGGGGGCGTACCAGCCTATCTGCACATTCATCAACAGAGGCTGGAGGGCAGAGGACTACCTGTTTAGGCTGGTCCCTGGGTATGCGGATTCAGGGAAGGGAAAGTGTTCCTATGATCCCAAACAGGAGAGCATTGCAGTTCTGATCAATGGTAACCTATATGCAGGGGTCCATATTGACTTCATGAGTACAGATGCTACTCTGTTCAGGACCAtgggagggagaacagcaaTCAGGACGGAGCAGTATGACTCCAGATGGCTCAACGAGCCTGTGTTTGTTCAGATCCAGCAGATCCCTGACAGTGCAGAAAGGAACGACGACAAGCTTTACTTCTTTTTTCGTGAGAAGAGTCTAGACTCGAGCGGCGGGGCGAGCCCCAGCGTTTTAGCCAGGGTTGGAAGAGTGTGTCTGAATGATGAAGGAGGCCAGAAGTCCCTGGTGAACCGCTGGACGACATTCCTGAAGGCCCGCCTTATCTGTTCAGTGATAGGAGAAGATGGAGTGGAGACACGTTTCGATGAACTACGGGATGTGTTCATTCAGCCCACACAGGATGAACGAAACCCCATGGTGTACGCTCTCTTCACTACAGCGGGCTCTGTGTTCAAGGGCTCAGCCGTCTGCGTGTACTCAATGGCTGATATCCGCAATGTCTTCAATGGACCGTTTGCCCACAAACATGGCCATAACTACCAATGGACAGAGTACACTGGCAAGATTCCCTACCCACGGCCTGGAACATGTCCAGGAGGAACCTTCACTCCTGGTATCCGTTCCTCCAAGAACTTTTCAGATGAGGCTGTGAATTTCATCCGAGCTCATCCCCTCATGATCCATCCAGTTTACCCAATCCACCGCCGCCCCCTGGTGGTGAGAACCGGCGTGGACTACCGATTCACTGCCATGGTGGTGGATCAGGTGGATGCTGTGGATGGACGCTACGAGGTGCTCTTCCTGGGGACAGATCGAGGCACTGTCCAAAAGGTCATCGTTTTGCCGAAGGACCCGACCAGCATGGAGGAACTGACACTAGAGGAAGTGGAGGTTTTCAGGTCCAGAGCTTCAGTCAAAACAATGAAGATATCCTCTAAAAGACAACAGCTGTACGTGTCATCAGACGCAGGGCTGACCCAGGTGTCGCTGCACCGCTGTGGCGTGTACGGCAGGGCCTGCTCTGACTGCTGTCTGGCTCGAGACCCCTACTGTGCCTGGGATGGAGAGAGCTGCTCTGCCTTCACCCCGTCCACCAAGAGGAGGAGCAGAAGACAGGATGTTAAACATGGTGACCCACTGAGGCAGTGCAGGGGCTTCAATGCCAAAGtgGAGAAACGTCTGAGAGAAACCGTGCAGTTCGGGGTGGAGGGCAGCAGTACCTTCTTGGAGTGTCAGCCTCGCTCTCCTCAGGCCACCGTCAAGTGGCTTTTCCAGcgggaaggaaagaggaaagtgACTCCTGCTGTTTCATTCCCTTTTCTGCAGCTCAACCGTGTGGGAGGGATTCTGAAGACCAATCATGGTATCCTCCTGAAGTCTCTCAACCAATCAGACGCGGGGCTCTACCACTGCCTCGCCACTGAGAACAACTTTAAGCACACAGTGGCCCGCGTGGCGCTGCGCATCCTGGATCGAGACATCGTTTTAGCGCTCACAGCTCAAGATGAGGATGAAGAGCCCAAAACCCGCCAAGCTGGACCTTACACGCAGTCATCTCTCGTCTCCACACCCTTCCCACCTGAGATTAGACTGATTAACCAGTACTGCCAGTCCTACTGGGAACAACTCAGTCCcaaacagcaacagcagcagcgcAAGCGCACCAGCCGCAGGCACACAGAGGGCCAGGACCAAGGCCTCGGCTAGAGGACAGGACAGACACTGTCCAACACTGGCCTGCGTGGACTTTTAGGGTGGACTTTTATGTTTTGACATGCATCTTTGTGCGTCGCCTCCATTCATTAGGCAGGTGATGCTGTCATGCTGTTGTTAAAGTACTATATTTGTGGTTTTGCAAGTGTCAGTCTCGAGAATACAAATTGTGTGTATTTCACATTATCTGTCACCACTTCCCAAAGAATACCGTACAGTTTAAATCAACTTGTTCAAGACTGATCACCTATCGTAGGGGTTCGTTGGTATGTTCAGGTGCTTGTGGGAAACCCCAGCATCGGTGACTTGAGAATCACTCTGGAAGGTAAACATTTATAGTGcaagaaactagaaaaagaaaaaaagatgtaatTTTTCACAATATCCATGTTTGCTTATTATGCATCTTTTGGATTTCATTTTCCAACAACACAACTAGTGAGAGCACAGATTTTCGGCTGCGGATTTATTTAtcatcatactgtatatttaacacAAGTTTGTCGTTGATTAGGAAACTGGTAAGCTGATGTATATGCAGCGTGTAGTTAACAGGCTTCAACATGCAGAACCACAGGTATGTTACCGTCAAGTATCTTGAGACAGAAATGTAATATATTGATtgtgaatataatatatatggtCATTGGATTACTCTTGTATGAAAATAATATGATGATATAAATGCATATGTTGCATGCATCATATGTTGTTTGTTGCaagttgtacattttactcGGTGTGTAATGATGTTTGTACGGTGTAATGTTTTCTGTTAAGCTAATTCCATTGGATGTTGTCATATAATGACTCCCTTACTGTCCTGTGCTCTAGTGACCTACAGTATGTGAGTGTTGAAGATATGCATAGCATACAGTGTTCTTCCAGTTATGCACTTTGTCGGTGGCGGTATTCGAGGGAATTTGGTATCTTTGCACAGATGTATGAGAAAATATAACAGGAacataatcttttttttaaatgtacagtatgttattaTAAAAATGGGAATGGAACTGGCCCAGATTTAGTATTGATAGTTGGTGTTTTGTTGTATGCTGTATTTACAGATTTTTAGGTGTAAGGAACCCGATTTGTTTTCCAGTCAGAGCCATTCTGAGTGACACAGTGCCATGTGCTGCCATGCTGATGAATCCTACACTGGAAATGTTCAagcatataatatataaacatttCAGAATTCTCTTTTCCCTTCCTTTATATTTAGATATTCAGTTAATCACCTCAAGTCATATTCCAGTTTTATTATCAATTATTGAACCTGAAATCAAACATGTACCAGTATTGCAATTCAGAGGTTTATAACCAAAAATCACAGTTGAACTAAATCCACGCAAACGAGAACTTCTGTCATCAGTCATCCCATTCGTCGTCATCGTCGTCTTCATCTCCACCCTCATCTTCACTTTCAtctgagagagaggacagatagaAAGATACATTATGAGGCCTTTTTTGGTGCAACTCTTCTGTTATGTAGGGTGTAATGAATGTTCTAATATTTACCAGAGGAATGGATGGCTTTACTCCTCTTCTGCATGACCATCATGAGGGCACCAACGATGCCCTCGCCTGAATCTGATGGTGTGGGTGGAGCTGCATCAGGACTGTCTATCACCTAAAAACACACCAGGACAAGAGGGCAGCGTTTGAACATGAAGATCTGCTACAAATGTCCAAAACTTAATTGGACTTATCACGCGTTACGGCATGTCAGTCCAGACTTGTGTACTTATATAGCatgtattaaatgttttttggagAAAAAGGAA
>XM_039801818.1
ATGGTGTACCAAGAGGTTTGGTCCAATGCTGCTGTGGGCCAACAGGAGAGGGAAGGCTGGGTGGGGGCAGAACAGAAGGGAGAGGACAGCAGGGCGCACACTCGCCCAACACCTGCACCTGGTCCCTTGATTCACACTCCAACAACTCCCTTTCAAGGATCAATGGACCAAGCTCTTGCTCACATCACGGTGATGGTTGCTGCCATCCAGGCTTAAACTTTTTTTTGGAAAGAGTGGAACAAGCATTCAGGGATcagctgtcttttctttttttttttgtaatgttgaATGGAAGAAACGCTAACAGCGACTGATTAGGCAGCTTTTTTTCCCTGTCTTTCCCAAGGGGAATTTGCAAACCTATCGGATTGTTTTATGCCTGCGCAGCGCGGCTGAGAGGAGATTTTCCAGCCCAGCTCCGAGGCACAAAACGCGGGGAATGCAGCGGTAACATCCCGCAACTTTTTGGATCTGAGATCTCGTCGCGGGTAGGCTATCGAGAAAGTCAGCAAGCAAAAGATTTAGATCTCTGTGGGCTACCTGCATGACCGTTACCATGACAGCATCTGGAGCCCAACTCCTCCTGTTGGCCTTATGTGTTTACAGAGTCTCAGGCCTGCAGCAGTCTTCTCCGCGGGTTCGCCTCTCCTTCAAAGAACTGATGGACACGAGGGCAGCGCGGCCCTTCAGTTTCTCCTTCAACACCAGCGACTACCGCATCCTCCTGATGGATCAGGATCAGGGCCGTCTGTATCTGGGCAGCCGGGAGTACCTGGTGGCTCTGGACATGCACAATGTCAACAAGGAGCCACTCATAATTCACTGGCCAGCATCTGCTAAGAGAAAGGGAGAATGTCAGATGACAGGAAAGGGAAGACAGGGTGAATGTGCCAACTTTGTGCGGTTGATAGAGCCGTGGAACCGCACCCACCTCTACACCTGTGGAACGGGGGCGTACCAGCCTATCTGCACATTCATCAACAGAGGCTGGAGGGCAGAGGACTACCTGTTTAGGCTGGTCCCTGGGTATGCGGATTCAGGGAAGGGAAAGTGTTCCTATGATCCCAAACAGGAGAGCATTGCAGTTCTGATCAATGGTAACCTATATGCAGGGGTCCATATTGACTTCATGAGTACAGATGCTACTCTGTTCAGGACCAtgggagggagaacagcaaTCAGGACGGAGCAGTATGACTCCAGATGGCTCAACGAGCCTGTGTTTGTTCAGATCCAGCAGATCCCTGACAGTGCAGAAAGGAACGACGACAAGCTTTACTTCTTTTTTCGTGAGAAGAGTCTAGACTCGAGCGGCGGGGCGAGCCCCAGCGTTTTAGCCAGGGTTGGAAGAGTGTGTCTGAATGATGAAGGAGGCCAGAAGTCCCTGGTGAACCGCTGGACGACATTCCTGAAGGCCCGCCTTATCTGTTCAGTGATAGGAGAAGATGGAGTGGAGACACGTTTCGATGAACTACGGGATGTGTTCATTCAGCCCACACAGGATGAACGAAACCCCATGGTGTACGCTCTCTTCACTACAGCGGGCTCTGTGTTCAAGGGCTCAGCCGTCTGCGTGTACTCAATGGCTGATATCCGCAATGTCTTCAATGGACCGTTTGCCCACAAACATGGCCATAACTACCAATGGACAGAGTACACTGGCAAGATTCCCTACCCACGGCCTGGAACATGTCCAGGAGGAACCTTCACTCCTGGTATCCGTTCCTCCAAGAACTTTTCAGATGAGGCTGTGAATTTCATCCGAGCTCATCCCCTCATGATCCATCCAGTTTACCCAATCCACCGCCGCCCCCTGGTGGTGAGAACCGGCGTGGACTACCGATTCACTGCCATGGTGGTGGATCAGGTGGATGCTGTGGATGGACGCTACGAGGTGCTCTTCCTGGGGACAGATCGAGGCACTGTCCAAAAGGTCATCGTTTTGCCGAAGGACCCGACCAGCATGGAGGAACTGACACTAGAGGAAGTGGAGGTTTTCAGGTCCAGAGCTTCAGTCAAAACAATGAAGATATCCTCTAAAAGACAACAGCTGTACGTGTCATCAGACGCAGGGCTGACCCAGGTGTCGCTGCACCGCTGTGGCGTGTACGGCAGGGCCTGCTCTGACTGCTGTCTGGCTCGAGACCCCTACTGTGCCTGGGATGGAGAGAGCTGCTCTGCCTTCACCCCGTCCACCAAGAGGAGGAGCAGAAGACAGGATGTTAAACATGGTGACCCACTGAGGCAGTGCAGGGGCTTCAATGCCAAAGtgGAGAAACGTCTGAGAGAAACCGTGCAGTTCGGGGTGGAGGGCAGCAGTACCTTCTTGGAGTGTCAGCCTCGCTCTCCTCAGGCCACCGTCAAGTGGCTTTTCCAGcgggaaggaaagaggaaagtgCTCAACCGTGTGGGAGGGATTCTGAAGACCAATCATGGTATCCTCCTGAAGTCTCTCAACCAATCAGACGCGGGGCTCTACCACTGCCTCGCCACTGAGAACAACTTTAAGCACACAGTGGCCCGCGTGGCGCTGCGCATCCTGGATCGAGACATCGTTTTAGCGCTCACAGCTCAAGATGAGGATGAAGAGCCCAAAACCCGCCAAGCTGGACCTTACACGCAGTCATCTCTCGTCTCCACACCCTTCCCACCTGAGATTAGACTGATTAACCAGTACTGCCAGTCCTACTGGGAACAACTCAGTCCcaaacagcaacagcagcagcgcAAGCGCACCAGCCGCAGGCACACAGAGGGCCAGGACCAAGGCCTCGGCTAGAGGACAGGACAGACACTGTCCAACACTGGCCTGCGTGGACTTTTAGGGTGGACTTTTATGTTTTGACATGCATCTTTGTGCGTCGCCTCCATTCATTAGGCAGGTGATGCTGTCATGCTGTTGTTAAAGTACTATATTTGTGGTTTTGCAAGTGTCAGTCTCGAGAATACAAATTGTGTGTATTTCACATTATCTGTCACCACTTCCCAAAGAATACCGTACAGTTTAAATCAACTTGTTCAAGACTGATCACCTATCGTAGGGGTTCGTTGGTATGTTCAGGTGCTTGTGGGAAACCCCAGCATCGGTGACTTGAGAATCACTCTGGAAGGTAAACATTTATAGTGcaagaaactagaaaaagaaaaaaagatgtaatTTTTCACAATATCCATGTTTGCTTATTATGCATCTTTTGGATTTCATTTTCCAACAACACAACTAGTGAGAGCACAGATTTTCGGCTGCGGATTTATTTAtcatcatactgtatatttaacacAAGTTTGTCGTTGATTAGGAAACTGGTAAGCTGATGTATATGCAGCGTGTAGTTAACAGGCTTCAACATGCAGAACCACAGGTATGTTACCGTCAAGTATCTTGAGACAGAAATGTAATATATTGATtgtgaatataatatatatggtCATTGGATTACTCTTGTATGAAAATAATATGATGATATAAATGCATATGTTGCATGCATCATATGTTGTTTGTTGCaagttgtacattttactcGGTGTGTAATGATGTTTGTACGGTGTAATGTTTTCTGTTAAGCTAATTCCATTGGATGTTGTCATATAATGACTCCCTTACTGTCCTGTGCTCTAGTGACCTACAGTATGTGAGTGTTGAAGATATGCATAGCATACAGTGTTCTTCCAGTTATGCACTTTGTCGGTGGCGGTATTCGAGGGAATTTGGTATCTTTGCACAGATGTATGAGAAAATATAACAGGAacataatcttttttttaaatgtacagtatgttattaTAAAAATGGGAATGGAACTGGCCCAGATTTAGTATTGATAGTTGGTGTTTTGTTGTATGCTGTATTTACAGATTTTTAGGTGTAAGGAACCCGATTTGTTTTCCAGTCAGAGCCATTCTGAGTGACACAGTGCCATGTGCTGCCATGCTGATGAATCCTACACTGGAAATGTTCAagcatataatatataaacatttCAGAATTCTCTTTTCCCTTCCTTTATATTTAGATATTCAGTTAATCACCTCAAGTCATATTCCAGTTTTATTATCAATTATTGAACCTGAAATCAAACATGTACCAGTATTGCAATTCAGAGGTTTATAACCAAAAATCACAGTTGAACTAAATCCACGCAAACGAGAACTTCTGTCATCAGTCATCCCATTCGTCGTCATCGTCGTCTTCATCTCCACCCTCATCTTCACTTTCAtctgagagagaggacagatagaAAGATACATTATGAGGCCTTTTTTGGTGCAACTCTTCTGTTATGTAGGGTGTAATGAATGTTCTAATATTTACCAGAGGAATGGATGGCTTTACTCCTCTTCTGCATGACCATCATGAGGGCACCAACGATGCCCTCGCCTGAATCTGATGGTGTGGGTGGAGCTGCATCAGGACTGTCTATCACCTAAAAACACACCAGGACAAGAGGGCAGCGTTTGAACATGAAGATCTGCTACAAATGTCCAAAACTTAATTGGACTTATCACGCGTTACGGCATGTCAGTCCAGACTTGTGTACTTATATAGCatgtattaaatgttttttggagAAAAAGGAA

Function

NR:

description
PREDICTED: semaphorin-3F-like

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801817.1 True 4608 mRNA 0.48 18 12708643 12722596
XM_039801818.1 False 4578 mRNA 0.48 18 12708643 12722596

Neighbor

gene id symbol gene type direction distance location
tspy LOC103354774 coding upstream 4554 12697896 ~ 12704089 (+)
wdr13 wdr13 coding upstream 38249 12662475 ~ 12670394 (+)
LOC120559891 NA coding upstream 57868 12646536 ~ 12650775 (+)
kdm5c kdm5c coding upstream 97475 12590907 ~ 12611168 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding upstream 121275 12561811 ~ 12587368 (+)
zgc:162200 LOC103354841 coding downstream 21964 12744560 ~ 12766040 (+)
nt5dc2 nt5dc2,LOC102799881 coding downstream 46213 12768809 ~ 12779241 (+)
aurkaip1 aurkaip1,LOC102776880 coding downstream 123022 12845618 ~ 12847975 (+)
LOC120559133 mxra8 coding downstream 126216 12848812 ~ 12859392 (+)
tnfrsf9a NA coding downstream 169875 12892471 ~ 12896719 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding upstream 30965 12674342 ~ 12677678 (+)
G49241 LOC101072313 non-coding upstream 47272 12660427 ~ 12661371 (+)
G49230 NA non-coding upstream 197065 12510042 ~ 12511578 (+)
G49223 NA non-coding upstream 232618 12474087 ~ 12476025 (+)
G49221 NA non-coding upstream 236371 12470450 ~ 12472272 (+)
LOC120559802 NA non-coding downstream 4004 12726600 ~ 12732417 (+)
G49314 NA non-coding downstream 58019 12780615 ~ 12783788 (+)
G49330 NA non-coding downstream 105985 12828581 ~ 12840565 (+)
G49334 NA non-coding downstream 198409 12921005 ~ 12928180 (+)
G49346 NA non-coding downstream 205660 12928256 ~ 12928471 (+)
LOC120558314 porcn other upstream 50335 12652384 ~ 12658308 (+)
G49209 NA other upstream 250204 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 405240 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 454583 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 485005 12223567 ~ 12223638 (+)
LOC120559236 LOC103354867 other downstream 72347 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 138125 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 809794 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 936136 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 1390419 14113015 ~ 14121022 (+)

Expression


Co-expression Network