nr4a1 (nr4a1,LOC100709939)


Basic Information

Item Value
gene id nr4a1
gene name nr4a1,LOC100709939
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11686287 ~ 11691273 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801852.1
GTATAAAAGTGTTGCAGAGATGTAAACGCGCAGGGACTTGCTTCTCAGCTGGGAAACACTGAAGATGACTGACGGTTGTTTGTGGAATACAGACAGTTCAAAACACTTGTAAACGGGCCCAACAGTCTTGCAACCATGACTTGCATACACCCTCAGCATGGATCTCAGCTCTACGAGAACAGCCTTGGCAGCTCGGAGCTTCAGAGCACAGACTCTCTCTCCAGGCTAACTGTGGATATGAGCAGCCCAGGGGACCAGCTCTCTGCTCCATCGCTGCCAAGCATCAGCTCCCTGGTGGACACTCGCGTGGGTGACTTTGACGCTTATTCATGTCAGTTCACTGCAGCCCCTGCCCACATCACTCCGTCGCCGGGCCAGGAGACCCCCTTCAAGCTGGATGACCTACAGGTTTACGGCTGCTACCCTGGAGCGTTCACGCTGAGTTACCCTGACGAGGCAGTGTCCCCTGGTGGGTCCGACTATTTTGGCAGCTCCGCATCCACCTCGTCTCCTTCAACCCCCCGGTTCCAGAGTCAGCATGCGTCCAATTCCAACTGGGATTCAGCCTTTGGGCCATACTCACCCAGTCCAGGGTACTGGGCAGCAGAGGACAACTCAGTGCCACAAGAGCCCTCTTTCTTCACCTTTGGTTCTGTGGAGGATATGTCCCATTTGGGTCAACCACACTTACGAGAGCAGAATCCTTTCACTTCGATCCACCCTAACCCCTCTGCACTGAGCTTCCCCACCTTGGTTATGGAGCAAGCGTGTAGCCTGGATGGCACTGAACAGCTGGATGGGAGCTTATCACCCAAGTTAAAAAGTCCCGGTGGAAATGAGGGCTGCTGTGCCGTGTGTGGGGACAACGCCTCCTGTCAGCACTATGGGGTTCGCACCTGTGAGGGATGCAAAGGGTTTTTCAAGCGTACAGTACAAAAGAATTCCAAGTATGTTTGCCTTGCCAACAAAGACTGTCCTGTGGACAAGAGGAGGCGGAATCgatgccagttctgccgttacCAGAAGTGTCTTGTTGTAGGCATGGTGAGGGAAGTTGTGAGAACAGACAGCCTGAAAGGACGAAGAGGCCGCCTGCCTTCAAAGCCTAAAGTGGCCCAAAACGTGACAGCCACCGTGTCTCCAGTGAGTATGATCGCTTCACTTGTGAGAGCCCACATCGACTCAAACCCCAGCATTGGGAAACTGGATTACTCCAAgTATGACGAGACAAAAGTCAGTCCAAACCAGAAAGAGGACGCTAGCGATATCAAACAGTTTTACGAGTTGCTCACATCCTCCATGGAGGTCATCAGGAAGTGGGCGAAGAGCATCCCAGGTTTCTCTGAGTTCTGCTCAGAAGACCAGGAACTGCTGCTGGAATCTGCCTTTGTCGAACTCTTCATCTTGCGTCTTGCATATCGtTCCAATCCTGATGTGGACAAGCTGATCTTCTGCAACGGGGCCGTGCTTCACAAAGCGCAGTGCGTCCGAGGCTTTGGGGACTGGATCGACTCCATCTTGGAGTTTTCTCAAAGCCTCCATCGCATGAGGCTAGATGTttcctccttctcctgtctCACAGCCCTGGTAATAATCGCTGACCGACATGGTCTTAAGGAGCCAAGACGTGTGGAGGACTTGCAGAACCAGCTCATCACCTGCCTCAAAGATCACATCTCTGGCTGCGGCTCCGACTCGCTGCGGCCCAATTATTTGTCCAAACTTCTTGGGAAGCTGCCTGACCTCAGGACTCTGTGCACTCAAGGCCTCCAGCGTATCTTTTACCTTAAATTAGAAGATCTTGTTCCTCCACCACCGATTGTGGACAAAATCTTCATGGATACGCTTCCGTTTTGAGTGTGAGATGGAAGATCTGTGATATATAAAATCTGGAGTGTATATGagagccaaaaaaacaaacagactgaCTCATACTTCAGGTAGAAGATTTTGCAGCTCCAGAGGAAAAGGGCTACTTCTGAATTATAAAGTGAATGATTTATAACACTTGCAGAAGCAACATGTATGAGCTGCACAAAATGCTCTTCCTGGTTGTTTTTTCCAGGAAATTGTGTACTCTGCAGACGGGCCAGCTCATGGACCAAAAGGTGACTGTTTACATACAACTAGGTGCCATGAATGGAAACATTTTTGATGGAGGGAAGATTATTGCACTTTCCAAACAGTTACAAATTAAATACAAACAATATCAGCCCCCATCATTTGAAGAATATAATAAGCACAatcatttagcttttttttttgctttggaCTGTAAATTGCACATAAAGTATCCTACAAAGCATTATTATG

Function

symbol description
nr4a1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Predicted to be involved in cellular response to corticotropin-releasing hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in axis; myotome; nervous system; and pectoral fin. Orthologous to human NR4A1 (nuclear receptor subfamily 4 group A member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 4 group A member 1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04465 NR4A1, HMR; nuclear receptor subfamily 4 group A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801852.1 True 2313 mRNA 0.49 7 11686287 11691273

Neighbor

gene id symbol gene type direction distance location
tamalin grasp coding upstream 25609 11648587 ~ 11660678 (+)
dgkaa LOC103366011 coding upstream 39006 11624892 ~ 11647281 (+)
rnf41 rnf41 coding upstream 63446 11616875 ~ 11622841 (+)
ankrd52a ankrd52 coding upstream 77200 11586878 ~ 11609087 (+)
cs cs coding upstream 107283 11564115 ~ 11579004 (+)
letmd1 NA coding downstream 14970 11706243 ~ 11712687 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding downstream 46013 11737286 ~ 11745742 (+)
pan2 pan2 coding downstream 69551 11760824 ~ 11777835 (+)
pym1 pym1,LOC102777374 coding downstream 116439 11807712 ~ 11811811 (+)
LOC120559303 mmp19,LOC101481755,LOC102777654 coding downstream 121979 11813252 ~ 11816554 (+)
G48860 NA non-coding upstream 82303 11603719 ~ 11603984 (+)
G48859 NA non-coding upstream 82585 11603407 ~ 11603702 (+)
G48856 NA non-coding upstream 91812 11594263 ~ 11594475 (+)
G48807 NA non-coding upstream 222208 11463273 ~ 11464079 (+)
G48806 csrnp2 non-coding upstream 224311 11461148 ~ 11461976 (+)
G48854 NA non-coding downstream 7753 11699026 ~ 11699956 (+)
LOC120559500 NA non-coding downstream 21531 11712804 ~ 11720917 (+)
G48876 NA non-coding downstream 61725 11752998 ~ 11753237 (+)
LOC120559701 slc13a3,LOC103399527 non-coding downstream 168829 11860102 ~ 11862940 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding downstream 190690 11881963 ~ 11903479 (+)
G48765 NA other upstream 370295 11314662 ~ 11315992 (+)
G48752 NA other upstream 512633 11172595 ~ 11173654 (+)
G48640 NA other upstream 935859 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1535036 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1761206 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 393179 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 401506 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 490936 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 532294 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 554372 12245645 ~ 12254060 (+)

Expression


Co-expression Network