LOC120558383


Basic Information

Item Value
gene id LOC120558383
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4258819 ~ 4264632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639103.1
aagaccatgTTGGAGTCCACTGGAGAGGCCATCACAGAAGATGACATTGAGGAGCTGATGAAGGATGGAGATAAAAACAATGATGGGAAAATTGATTATGACGAGTTCCTTGAGTTCATGAAAGGCGTTGAATAAAGGATTCAGCTGGAGGCCTCACAACGCAGTATCTTCACTTTCCATTGACTTCATCATCATCTCCGGCCATTCCTGAAGACATGGCTCTACCTTTTGTCTGCGTTTACCAAACCCAATCAACACACCTGTTCTCAGCCTGTCCCGTCACACAGAGGCCCTGAAAGGTTTGCCGAAGGACCTCATTGACTGCAAATATCTTTATTCCTGAAAGTAATGATCAATCAAAATGTCATATTTAAAGACTTTTcaataaaattattttcataattgCA

Function

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639103.1 True 407 lncRNA 0.41 2 4258819 4264632

Neighbor

gene id symbol gene type direction distance location
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 248 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 78483 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 199106 4030523 ~ 4059713 (+)
LOC120558402 LOC103357835,LOC104954328 coding upstream 244218 4005265 ~ 4014601 (+)
LOC120558400 NA coding upstream 276538 3958556 ~ 3982281 (+)
LOC120559099 NA coding downstream 2243 4266875 ~ 4281526 (+)
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding downstream 166756 4431388 ~ 4587064 (+)
LOC120558307 NA coding downstream 1111671 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 1482577 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1799218 6063850 ~ 6234843 (+)
G47113 NA non-coding upstream 183919 4074028 ~ 4074900 (+)
G47076 NA non-coding upstream 202856 4055674 ~ 4055963 (+)
G47062 NA non-coding upstream 239740 4015192 ~ 4019079 (+)
G47045 NA non-coding upstream 323229 3934329 ~ 3935590 (+)
LOC120559454 NA non-coding upstream 332954 3920578 ~ 3925865 (+)
LOC120558318 NA non-coding downstream 394834 4659466 ~ 4666871 (+)
LOC120559518 NA non-coding downstream 497757 4762389 ~ 4766774 (+)
LOC120559496 NA non-coding downstream 504648 4769280 ~ 4772306 (+)
G47276 NA non-coding downstream 513485 4778117 ~ 4778555 (+)
LOC120559638 NA non-coding downstream 593636 4858268 ~ 4858785 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 393021 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 744061 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 954182 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 970730 3146481 ~ 3288089 (+)
G46574 NA other upstream 1488366 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 508300 4772932 ~ 4775358 (+)
G47444 NA other downstream 1934414 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 2433361 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3847809 8112441 ~ 8116228 (+)
pkig pkig other downstream 4078118 8342750 ~ 8380578 (+)

Expression


Co-expression Network