LOC120558477


Basic Information

Item Value
gene id LOC120558477
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20661297 ~ 20662553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639130.1
aatggcttccacaagttcacctggaacctccaaatctatGATATACAAGATCTTTTCTTGGAGGGGGACCATGACAGAGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCCGCAGACTGTGGCAGAACTGAGGGCAGCCAATGGCGGATAGCTTTGCATGACTGCACTTAACTATGTGATTCTTTACACATAAACATGGCAGGACAACAcaggaaaaacattttgtttgttattttaaaatgacaaataccACTACTACTTTATATGTAGTACTGATTTTAATCCTTaacagtttttgaaatgacatgcatttacagtatggaCTCCAGCAAAACAGTTAAATCTATACATTTTCagtgaataataaataaatatattcaagtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639130.1 True 411 lncRNA 0.38 2 20661297 20662553

Neighbor

gene id symbol gene type direction distance location
LOC120558879 NA coding upstream 251943 20397340 ~ 20409354 (+)
LOC120558882 NA coding upstream 265448 20382206 ~ 20395849 (+)
LOC120558898 LOC104932064,LOC103374062,LOC101476551 coding upstream 292849 20349467 ~ 20368448 (+)
trnaf-gaa_3 NA coding upstream 336056 20325169 ~ 20325241 (+)
LOC120558908 ebp coding upstream 337194 20322245 ~ 20324103 (+)
zgc:174906 NA coding downstream 38208 20700761 ~ 20705809 (+)
csad csad coding downstream 44204 20706757 ~ 20712264 (+)
znf740b znf740,LOC100692539,LOC101474992 coding downstream 50829 20713382 ~ 20720457 (+)
nfe2 nfe2,LOC102789365 coding downstream 83002 20745555 ~ 20750691 (+)
cbx5 cbx5 coding downstream 92500 20755053 ~ 20759445 (+)
G51317 NA non-coding upstream 490178 20157789 ~ 20171119 (+)
G51283 NA non-coding upstream 665181 19995881 ~ 19996116 (+)
G51282 NA non-coding upstream 669104 19990773 ~ 19992193 (+)
G51221 NA non-coding upstream 856004 19778068 ~ 19805293 (+)
G51220 LOC105935863,LOC107390966,LOC108235152 non-coding upstream 859720 19769075 ~ 19801577 (+)
G51386 NA non-coding downstream 89042 20751595 ~ 20752345 (+)
LOC120558354 NA non-coding downstream 109900 20772453 ~ 20779399 (+)
G51625 NA non-coding downstream 558098 21220651 ~ 21222557 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding downstream 567717 21230270 ~ 21233529 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 615223 21277776 ~ 21288705 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 128728 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 595562 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 660859 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 892733 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1197585 19456477 ~ 19463712 (+)
G51716 NA other downstream 627035 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 698737 21361290 ~ 21364430 (+)
G51804 NA other downstream 896337 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 1054556 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 1120664 21783217 ~ 21807914 (+)

Expression


Co-expression Network