LOC120558642


Basic Information

Item Value
gene id LOC120558642
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22085266 ~ 22086233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639160.1
TCCCAGCACTCTCCAATAGATGGCAGTAATGCAACACTTATGGATGCCAACTGCTCTTAAACCACATGAAGAAGCCTTGTTAAATGTTTCAGAGAGACGGTTGGCACCATAGACATAATAGAATCTACTTGATGTTCCTCCAGATCTGACTGATCAGATGCTGTCCTGGACACCTGTTTGATGAGGTTTACCTGGACCCACAAGACTCTCCTCACAGTATGAAGGTATTGTGGGACAGGTACCATACTTCTGCCAAGTGATGATGGTCTGAAGACAACACAGCAGCATCAGGACATATTCAGTATCCACAGGATGACTTCTGTGACCTGAGAGCCTACATTACCAGCTGACACATCCTCAGTAGAAAATAAACCCTTTAGTCTGGGTGAGGACATGATCTGGACTGTTATCTGCTactctgtgcattatgtatacacactttatatttacatttcattGACTATGAATAAAGTGCTTTATTTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639160.1 True 485 lncRNA 0.42 2 22085266 22086233

Neighbor

gene id symbol gene type direction distance location
idh3g idh3g coding upstream 56972 22022834 ~ 22028294 (+)
ribc1 NA coding upstream 257376 21823518 ~ 21827890 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 304316 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 338549 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 465065 21607339 ~ 21620201 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 24754 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 98063 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 116858 22203091 ~ 22213864 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 154249 22240482 ~ 22244763 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding downstream 160722 22246955 ~ 22248730 (+)
G52006 NA non-coding upstream 53747 22031209 ~ 22031519 (+)
G51935 NA non-coding upstream 170429 21914325 ~ 21914837 (+)
G51927 NA non-coding upstream 179018 21905055 ~ 21906248 (+)
G51922 huwe1 non-coding upstream 184263 21900444 ~ 21901003 (+)
G51921 huwe1 non-coding upstream 185035 21899124 ~ 21900231 (+)
G52031 naa10 non-coding downstream 19412 22105645 ~ 22106945 (+)
G52035 NA non-coding downstream 25236 22111469 ~ 22137332 (+)
LOC120558498 NA non-coding downstream 86911 22173144 ~ 22176411 (+)
G52060 LOC104967533,LOC103368342 non-coding downstream 148923 22235156 ~ 22237182 (+)
G52064 NA non-coding downstream 168062 22254295 ~ 22254973 (+)
avpr2aa avpr2,LOC105897269 other upstream 24621 22046763 ~ 22060645 (+)
G51926 NA other upstream 181189 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 277352 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 365143 21717109 ~ 21720123 (+)
G51804 NA other upstream 525917 21558890 ~ 21559349 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 3964 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 470096 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 475921 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 755811 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 905019 22991252 ~ 23068479 (+)

Expression


Co-expression Network