LOC120558704


Basic Information

Item Value
gene id LOC120558704
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13779267 ~ 13798652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639167.1
GACAACAAAATAATGGTTGCTGATCTAATTTCCTTATGGAAGgttttttgttgttgaccaGACCAATGTGAGATGCCTTTCTAACTGAACCAAGAAAAGTATAGAAGAATATGAGACTGGACAAGTTGAGTGGGTAAATTGTGATCTTCAATATCTTGGCAAGAGGAGAGTCTAATATACTTGAAGGTTTTCCAGGAAACTGTGAAAAAGGTATTTCACACCTAATATCAAACACCAGgggtttgaaaaaaaacaacaaagtgcAACTAATACTGTTACCTTTATACATGATAGATTTGCTGTTTTTCAACCCAGACAATAGACTGTCCTCCCCAAGAAAAGCAACAGCATCTGTAGTTTCAGCAAGTGCCTCAAAGCAACATATGTTTACGCTTAAGTGACAGAGCCCTCTATAGAGTGAGGATTGGGTCTAGAAAACATCTAACACAGGAGACAGCTGTGTTTCCCCATTTCCAACCGACtgcgttttttttaaagcacaacCATGGTcgttccctaaccttaacactTTGTTATTCTAACCGTGACAATGAAGCTCCTGTAACCTTGATGTAATTTTAAGCCAAACCAAACCTTAACTTTAGCATTTGTCAGATTTATTTTGCAACAGTGATTTGTATGGTTTTGAAAGGCACATAAATGTCAAATGATGATGTCCTGCTGATATGGATGTCAGACCAGAAAATGTTTCTACTGTATGTGTTACAACAACACCACATATacaaaacagcaacagaaaTTTCCATAACCACAACAGTATGTGGCATTCTAGaggacaatttattttgtagtttaATTTGGAGGTCTTGTTATTAAATCGTTTTTGTCtattatttttggaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639167.1 True 864 lncRNA 0.36 3 13779267 13798652

Neighbor

gene id symbol gene type direction distance location
oard1 oard1,LOC106909399 coding upstream 121891 13655553 ~ 13657376 (+)
guca1b guca1b coding upstream 124607 13652368 ~ 13654660 (+)
LOC120559296 ppp4r2 coding upstream 129371 13642629 ~ 13649896 (+)
LOC120559547 mitf coding upstream 173832 13564625 ~ 13605435 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 247779 13527308 ~ 13531488 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 346575 14145227 ~ 14185140 (+)
LOC120558842 anks1a coding downstream 432483 14231135 ~ 14305611 (+)
LOC120559736 NA coding downstream 509310 14307962 ~ 14317786 (+)
scube3 scube3 coding downstream 527150 14325802 ~ 14402540 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding downstream 732502 14531154 ~ 14539601 (+)
G49598 NA non-coding upstream 13155 13764559 ~ 13766112 (+)
G49591 NA non-coding upstream 28425 13749558 ~ 13750842 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding upstream 47018 13725088 ~ 13732249 (+)
G49562 NA non-coding upstream 137393 13616877 ~ 13641874 (+)
G49572 NA non-coding upstream 140174 13636866 ~ 13639093 (+)
G49619 NA non-coding downstream 325000 14123652 ~ 14124536 (+)
G49663 NA non-coding downstream 424643 14223295 ~ 14223723 (+)
G49660 NA non-coding downstream 429718 14228370 ~ 14229092 (+)
G49665 NA non-coding downstream 430993 14229645 ~ 14230394 (+)
G49718 NA non-coding downstream 604054 14402706 ~ 14403546 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 54277 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 244345 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 893043 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 934833 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 1120959 12652384 ~ 12658308 (+)
hmga1a hmga1,LOC103355299 other downstream 314363 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 406945 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 766215 14564867 ~ 14567456 (+)
G49776 NA other downstream 775890 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1973565 15772217 ~ 15798957 (+)

Expression


Co-expression Network