LOC120558722


Basic Information

Item Value
gene id LOC120558722
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16544269 ~ 16545835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639171.1
cacacacacacacacacacacacacagctaatgCCAGTGCATTTCCTAAGGAATTCAGAGGGTGTGAGAAAAGCCTTTCGTGTTCACAACCAAGAGAACGAAACACACATTAGCTAGAGTGCAGGTctgaggagaaagaggaaaaaaaacagaggcttTTCTAGGGCCCCACTATCACAACAAATGATTTCAAGACCAAATCCTTTTCACACCAAGAGTTTGGTCTCCTACCAGATTTTGCGGGTGGAGACTCACAGTGGTGGGAGTAGGAAGTGGAGAGGTGTCAGCAGTTACCAGGTTGAGGATGACCTCCATGGCGGGGAGACACATGCACACGGCCTGGACTGGACTTTTgtttggtctgtctgtctgtctatcggTTTGTGTTTCCCTCGGGAGACGACCACAGCCGGGTGAGAGGTGACGAGCGTGGCCCTAGGAGAGCACTCATCACTCAGGACACTTCTCCCAAACAAAGTCCACTTGACTCAAAATCCACCGGACAAAGACTCTAATTGACAACAAGGAAGTAGAGACTCTTAGGAATTACTGTTGGCTCGATTGAATATCCAGAATCCATAGAGTGCCGGGTACCTCCAGCAGTGAACCATGACTATTGATAGCCGCAGAGTCTAGGGAGTGTTGTGCTGCTGGTTCACAGAGCAGTCGCTCCTCAAAGCCCATGACCACGCTTCAGTGCCAACACACGCTTCGCAGTACACAGCAACAGGCAGAGAGCCTATGGAGCACACATATATGCGCTTCGATAAGCATGACTCCCACAGACAGCGTGCATTCGTGGGAGAGCAAGGACTTCTCTGGAGCAAAGGGTCCGTCTGATGTGGGTTTGGGGTGACAGAGCAGAGGCGGTTAAACAGATGAAGACTTGCAGGGTTGGATGGTTAAAAGAAGGAAGAGTTTACTGTGAAGTTAAGTGTTCAAAGAGTCCGTTGGGGATAAAATCCTCAGAGGGTGAAAAGAGAGGCAGAGACCCAGAGGACGGATGTGAGGGGAGCGAGGGAGCAGACAGCAAAAAAAAGAGCCCACCAGGAGCTGTCACtgagagggagcgagagaggCAGCTAAGGAAAGAGGGGTTGTGAGAAAGCTTTGtgaagggaggaggggggggcttTTCTTCTGTTGGAGTTTCTAGGCCAGCTCAGCTCCAAAACAGGGGCTAACTCAGGCATAAAGAAAGGGAGAAAAATCTTCCACTCCCGCCTTTTAATTATTACACAGTATGATTGTCGCAACCAATCAGTTTCCCAGGTTATCATGCTGTTATGAATCACTTTCCACTGCCTGTGTGCGCTAACAAACGGGGCTATACCAAATGTTACTGCCAaccaataaaacacacaaaaatgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639171.1 True 1372 lncRNA 0.49 2 16544269 16545835

Neighbor

gene id symbol gene type direction distance location
LOC120558717 rho coding upstream 84278 16451768 ~ 16459991 (+)
ift122 ift122,LOC102796889 coding upstream 93639 16429579 ~ 16450630 (+)
LOC120558716 creld1,LOC102797660,LOC103361984,LOC100691430 coding upstream 120088 16418835 ~ 16424181 (+)
wu:fl23c11 NA coding upstream 125857 16409281 ~ 16418412 (+)
LOC120559120 NA coding upstream 239302 16297931 ~ 16304967 (+)
trh trh coding downstream 65382 16611217 ~ 16613788 (+)
LOC120559103 rbsn coding downstream 72628 16618463 ~ 16625418 (+)
b3galt4 b3galt4,LOC104957801,LOC102791999 coding downstream 100348 16646183 ~ 16649147 (+)
LOC120559510 LOC102311931,LOC106676355,LOC102214845 coding downstream 114632 16660467 ~ 16666649 (+)
LOC120559511 LOC102311931,LOC106676355,LOC102214845,LOC102799804 coding downstream 124993 16670828 ~ 16679344 (+)
G50280 NA non-coding upstream 118449 16425618 ~ 16425820 (+)
G50218 NA non-coding upstream 258510 16285557 ~ 16285759 (+)
G50077 NA non-coding upstream 593097 15949249 ~ 15951172 (+)
G50029 NA non-coding upstream 838801 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 874725 15667249 ~ 15669544 (+)
G50318 NA non-coding downstream 21166 16567001 ~ 16569382 (+)
G50320 NA non-coding downstream 34224 16580059 ~ 16580993 (+)
G50326 NA non-coding downstream 60130 16605965 ~ 16626218 (+)
LOC120559512 NA non-coding downstream 134746 16680581 ~ 16683534 (+)
G50410 LOC103368435 non-coding downstream 281045 16826880 ~ 16829880 (+)
LOC120559923 NA other upstream 135808 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 148061 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 164624 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 233252 16304312 ~ 16311017 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 574938 15885990 ~ 15969331 (+)
eif2d eif2d other downstream 432062 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 640076 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 1195536 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1710057 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 2136308 18682143 ~ 18686302 (+)

Expression


Co-expression Network