LOC120558808


Basic Information

Item Value
gene id LOC120558808
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7310001 ~ 7313720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639192.1
TTCAGTGCACATGGTTAAGTATCCTATGATGATCTAATTAAATAGTCGGCACATGCTAGAAAAGCTGTGtgctatataaaataaatgttgttgattgattgaataGCCTATGTTGTTTTCACACATTTAAATTAAGCATGcttttttcaacaacaaaaattacTTGCTTCCAGCAGGTTGATACACCTAACATTACAATAACACACTACAGTTGGCTAATAATGACTTACCAGATGAAGTTGTCTGTGCACTGGTAGGAAACCATATTCATCTTATGTCCACATTGCTTGCATTTCATCTTTCCTTTTAGCAGATGTTTTTTCTGTAGCCATTTGATCAGTTTTAAActggattttttgttttgtttgacataaACTTTATAAATTAGTTTTCTAATGCAACAGTCCATTATTATCATAGAGGCATGTAAAGGATTCAAAAGAATTTGAATAGAATTGGCGCACTCCTTGACTATATAGTAGCCTATTTGGCGCCCTGCCATTTCATTGGCTATCCCATCCCGGCACACGCCAATACATTTTATCTTCTCCAGTCTAGACCAATAACGAATGAGCAGTTTTAGCTCACATCTGAGCCCGGGTTCAAGCTCACATCCACAAAGGCGAAGagtccacacagcatggCCGCTCTGGGGACAAGAGGACGAAAGCGTGTCCATGACAAGGAGGAAGTTGAAGAACAATCTCAAGAAGATGAACTTAACATTAACCAAGAATTAATTATATGGAAAAATAAAGCAAAGATCCTCCAGGATCGAGTGGAACAAC
>XR_005639193.1
AGCACAATAAACCAACATGatacaaatgtgaaaaatgttgaattgaaaagaaaaaaatatagtttCTATGTGTTTATTCTAATGGCACAACCAACCTAACTGGATTTGAAGAATATAATGCAAGTAATCAATGGTGTTTAACAGTTGTCAAAGTTGTGTCTTCTGAAGAAATATAGAGTGAGTCAAACAAAGCACTGCTTCTGGGCATTAGTGACATGCAATTTCACTTCTTTCTACATTGCTTGTCCAACCTAAAACTCAGACATGTCAAGTGTGAGCTGTCATTCACTTGTCAATGTTAAGTTGCAGGCTCCCAACCTACCTGAGGGAGAAATCCTTGTTGATCTTTCTAGACCAATAACGAATGAGCAGTTTTAGCTCACATCTGAGCCCGGGTTCAAGCTCACATCCACAAAGGCGAAGagtccacacagcatggCCGCTCTGGGGACAAGAGGACGAAAGCGTGTCCATGACAAGGAGGAAGTTGAAGAACAATCTCAAGAAGATGAACTTAACATTAACCAAGAATTAATTATATGGAAAAATAAAGCAAAGATCCTCCAGGATCGAGTGGAACAAC
>XR_005639194.1
TTCAGTGCACATGGTTAAGTATCCTATGATGATCTAATTAAATAGTCGGCACATGCTAGAAAAGCTGTGtgctatataaaataaatgttgttgattgattgaataGCCTATGTTGTTTTCACACATTTAAATTAAGCATGcttttttcaacaacaaaaattacTTGCTTCCAGCAGGTTGATACACCTAACATTACAATAACACACTACAGTTGGCTAATAATGACTTACCAGATGAAGTTGTCTGTGCACTGGTAGGAAACCATATTCATCTTATGTCCACATTGCTTGCATTTCATCTTTCCTTTTAGCAGATGTTTTTTCTGTAGCCATTTGATCAGTTTTAAActggattttttgttttgtttgacataaACTTTATAAATTAGTTTTCTAATGCAACAGTCCATTATTATCATAGAGGCATGTAAAGGATTCAAAAGAATTTGAATAGAATTGGCGCACTCCTTGACTATATAGTAGCCTATTTGGCGCCCTGCCATTTCATTGGCTATCCCATCCCGGCACACGCCAATACATTTTATCTTCTCCAGTCTAGACCAATAACGAATGAGCAGTTTTAGCTCACATCTGAGCCCGGGTTCAAGCTCACATCCACAAAGGCGAAGTATCTTTCTagagtccacacagcatggCCGCTCTGGGGACAAGAGGACGAAAGCGTGTCCATGACAAGGAGGAAGTTGAAGAACAATCTCAAGAAGATGAACTTAACATTAACCAAGAATTAATTATATGGAAAAATAAAGCAAAGATCCTCCAGGATCGAGTGGAACAAC
>XR_005639195.1
AGCACAATAAACCAACATGatacaaatgtgaaaaatgttgaattgaaaagaaaaaaatatagtttCTATGTGTTTATTCTAATGGCACAACCAACCTAACTGGATTTGAAGAATATAATGCAAGTAATCAATGGTGTTTAACAGTTGTCAAAGTTGTGTCTTCTGAAGAAATATAGAGTGAGTCAAACAAAGCACTGCTTCTGGGCATTAGTGACATGCAATTTCACTTCTTTCTACATTGCTTGTCCAACCTAAAACTCAGACATGTCAAGTGTGAGCTGTCATTCACTTGTCAATGTTAAGTTGCAGGCTCCCAACCTACCTGAGGGAGAAATCCTTGTTGATCTTTCTAGACCAATAACGAATGAGCAGTTTTAGCTCACATCTGAGCCCGGGTTCAAGCTCACATCCACAAAGGCGAAGTATCTTTCTagagtccacacagcatggCCGCTCTGGGGACAAGAGGACGAAAGCGTGTCCATGACAAGGAGGAAGTTGAAGAACAATCTCAAGAAGATGAACTTAACATTAACCAAGAATTAATTATATGGAAAAATAAAGCAAAGATCCTCCAGGATCGAGTGGAACAAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639192.1 False 788 lncRNA 0.38 3 7310584 7313720
XR_005639193.1 False 583 lncRNA 0.39 4 7310001 7313720
XR_005639194.1 True 799 lncRNA 0.37 3 7310584 7313720
XR_005639195.1 False 594 lncRNA 0.39 4 7310001 7313720

Neighbor

gene id symbol gene type direction distance location
LOC120558796 NA coding upstream 30993 7271418 ~ 7279008 (+)
LOC120558794 NA coding upstream 43566 7261702 ~ 7266435 (+)
LOC120558604 NA coding upstream 129804 7172361 ~ 7180197 (+)
LOC120558799 NA coding upstream 160615 7143788 ~ 7149386 (+)
LOC120558603 NA coding upstream 174159 7126624 ~ 7135842 (+)
LOC120558666 LOC100692487,LOC102794907,LOC102302796,LOC101487578 coding downstream 320160 7633880 ~ 7650645 (+)
LOC120558668 LOC101467015,LOC102195234,LOC101063096,LOC101170270 coding downstream 338353 7652073 ~ 7671014 (+)
lima1a NA coding downstream 417095 7730815 ~ 7764951 (+)
LOC120558968 LOC105935211,LOC103363443,LOC101066234,LOC106920718 coding downstream 451880 7765600 ~ 7773185 (+)
igfbp6b LOC103366149,LOC101464910,LOC100708122,LOC104966704 coding downstream 528426 7842146 ~ 7848434 (+)
G47517 NA non-coding upstream 4520 6846048 ~ 7305481 (+)
LOC120558803 NA non-coding upstream 57749 7161017 ~ 7252252 (+)
G47536 NA non-coding upstream 171115 6981415 ~ 7138886 (+)
LOC120558802 NA non-coding upstream 226927 7082881 ~ 7083074 (+)
G47543 NA non-coding upstream 246395 7062067 ~ 7063606 (+)
LOC120558816 NA non-coding downstream 19 7313739 ~ 7316913 (+)
LOC120558807 NA non-coding downstream 80220 7393940 ~ 7395907 (+)
G47762 NA non-coding downstream 142755 7456475 ~ 7456739 (+)
G47768 NA non-coding downstream 154701 7468421 ~ 7469071 (+)
G47789 NA non-coding downstream 270943 7584663 ~ 7585957 (+)
ccm2l ccm2l,LOC102778549 other upstream 589069 6697993 ~ 6720932 (+)
G47444 NA other upstream 1109407 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 2534643 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 3444203 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 3795243 3448104 ~ 3514758 (+)
G47903 LOC104965021 other downstream 798721 8112441 ~ 8116228 (+)
pkig pkig other downstream 1029030 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 1164403 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 1340692 8654412 ~ 8662891 (+)
G48077 NA other downstream 1366562 8680282 ~ 8687964 (+)

Expression


Co-expression Network