LOC120559279


Basic Information

Item Value
gene id LOC120559279
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15207742 ~ 15241127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639237.1
atatccttcactggtctccgtccagagcaacgggatctgttggtccattatatatactgtctatgcacTTGACCTCCCGGCCGTGTTTGTGCTTTTCGGAGAATTTTTTTATGAAGTTATCCGTCACATAATGTGGCTTGCtacatgtttatttgtgctAACAGACCCTCCAAGAAGTCAGCGCTCCAGTTATTTTGTTCAAACAGCCAGCAGCTCTTAGAGTCGACAATCCGAGCCATGGACGGATCCAGATGAGGAGCAGGCTGGACGCTGAGAGGAACTTCTTCCATATGCAATACTTACACTCCTGGAGTGGTCCTCTACAATAATAAATCAGCCATGACGGTTGCCATGCCAAGGTCTTCTGCCACCCCTGGAGGGTTGTTCCTGAGACCTTATAGCTGGTGATTTGAGGCGATCCAGCTGGAAATGCTCTGCTGCTGAGACTCAGTGCAGGGTCAGGACTATAGCCAGGCCCTCTGGAGGAGCAGACTGGACAGCTGAACTCTGACTGCCTGGGCCAGACACAACATTAATTTTGCCCGTTCCGACGTACATGGCAATGTGACTCTGCTCTCACTCTTCACTGTTTAGCAATAAACTACGGCTGACAATAACCGTATAAGCTGTTGTGCTTGTCAAGGTCTTAAGATAACATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639237.1 True 660 lncRNA 0.48 3 15207742 15241127

Neighbor

gene id symbol gene type direction distance location
kcnk15 LOC104919657,LOC103357353,LOC104951678,LOC100707244 coding upstream 92558 15088421 ~ 15115184 (+)
LOC120559274 NA coding upstream 130797 15071921 ~ 15076945 (+)
si:ch73-181d5.4 NA coding upstream 137329 15032707 ~ 15070413 (+)
LOC120559459 NA coding upstream 175182 15012216 ~ 15032560 (+)
trnak-cuu NA coding upstream 194775 15012895 ~ 15012967 (+)
LOC120558693 cdh4,LOC100707506,LOC101477622 coding downstream 134284 15375411 ~ 15637423 (+)
lsm14b NA coding downstream 441130 15682257 ~ 15686191 (+)
LOC120559909 ss18l1,LOC102784650 coding downstream 446198 15687325 ~ 15696878 (+)
mtg2 mtg2 coding downstream 456152 15697279 ~ 15700376 (+)
spo11 spo11,LOC103368783 coding downstream 592056 15833183 ~ 15840777 (+)
G49883 NA non-coding upstream 236939 14902916 ~ 14970803 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding upstream 616966 14585449 ~ 14590776 (+)
G49775 LOC107731244 non-coding upstream 638145 14568325 ~ 14569597 (+)
G49764 NA non-coding upstream 656183 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 660647 14546864 ~ 14547095 (+)
G50002 NA non-coding downstream 34986 15276113 ~ 15276360 (+)
G50003 NA non-coding downstream 36319 15277446 ~ 15277646 (+)
G50014 NA non-coding downstream 181192 15422319 ~ 15422608 (+)
G50011 NA non-coding downstream 396356 15637483 ~ 15639301 (+)
G50017 NA non-coding downstream 426122 15667249 ~ 15669544 (+)
G49776 NA other upstream 630170 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 640286 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 979854 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 1086720 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 1482752 13658732 ~ 13724990 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 531090 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 535090 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 644863 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1063185 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 1081694 16322821 ~ 16379645 (+)

Expression


Co-expression Network