LOC120559418


Basic Information

Item Value
gene id LOC120559418
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1696242 ~ 1697615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639251.1
GAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGCAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGACCCTCATTAGAAAGATGATGGAGACCACATTTCCCCC
>XR_005639252.1
GAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGCAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGACCCTCATTAGAAAGATGATGGAGACCACATTTCCCCCTAACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639251.1 False 208 lncRNA 0.44 3 1696242 1697609
XR_005639252.1 True 211 lncRNA 0.45 3 1696242 1697615

Neighbor

gene id symbol gene type direction distance location
LOC120558473 LOC103372586 coding upstream 87797 1568295 ~ 1608445 (+)
adrm1 NA coding upstream 643232 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 651003 1015388 ~ 1045239 (+)
trim101 NA coding upstream 685405 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 709971 938976 ~ 986271 (+)
LOC120559387 NA coding downstream 715956 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 851324 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 948277 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 963957 2661572 ~ 2662342 (+)
LOC120558526 NA coding downstream 1055898 2753513 ~ 2757047 (+)
G46340 NA non-coding upstream 7924 1688087 ~ 1688318 (+)
G46339 NA non-coding upstream 17640 1678337 ~ 1678602 (+)
G46329 NA non-coding upstream 37317 1638395 ~ 1658925 (+)
G46325 NA non-coding upstream 65905 1629532 ~ 1630337 (+)
LOC120559421 samd3,LOC101476819 non-coding upstream 144274 1550170 ~ 1551968 (+)
G46352 NA non-coding downstream 38710 1736325 ~ 1738245 (+)
G46378 NA non-coding downstream 102301 1799916 ~ 1818908 (+)
G46380 NA non-coding downstream 140117 1837732 ~ 1838821 (+)
LOC120559438 NA non-coding downstream 151440 1849055 ~ 1851198 (+)
G46383 NA non-coding downstream 179097 1876712 ~ 1876982 (+)
G46328 NA other upstream 58072 1635948 ~ 1638170 (+)
G46305 NA other upstream 173011 1522685 ~ 1523231 (+)
G46238 NA other upstream 411863 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 448471 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 795946 793902 ~ 900296 (+)
LOC120559409 NA other downstream 507726 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 639721 2337336 ~ 2339429 (+)
G46530 NA other downstream 692331 2389946 ~ 2390512 (+)
G46574 NA other downstream 1048283 2745898 ~ 2770453 (+)
LOC120559392 NA other downstream 1448866 3146481 ~ 3288089 (+)

Expression


Co-expression Network