LOC120559421 (samd3,LOC101476819)


Basic Information

Item Value
gene id LOC120559421
gene name samd3,LOC101476819
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1550170 ~ 1551968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639255.1
gaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGAAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTTCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca
>XR_005639256.1
gaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGAAATCAGGCTCACTGGACTTActTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca
>XR_005639257.1
AATAACGttaccagagactatttagaaggACTTTGACGTTACGCACTCCAGCAGCACAACTAGCGACCTAGCTACCACTAACCGACTCCCTGAAGAATTTGACGACGGATGAATCTAGTAATCACACGCTCATTCCCCGCTTAAAGGTGGTGTTAGAAAATTAGTTGTTAGTAGAAGCACGAACAGACACCTGGTATGTTAGTAGAAGCACTAACAGACACTTCATATGCAATAGTTAGTTTTTTGTTGATGGAAACTTTCAATAGTGCACAAAAGAGCATAAACGCCTCAAACTGAGTTCCTACACTGCAAGTCCGCGCCCTCTGTGTAGCTTCTAGGGACGCTagttttaaattctgtgtgaGCAGACTGTCTGAGACACGGAGATTGCTGTTAACAGAACGAGTCAACTGCCCGTGCCTGCCTACTTGTGTTGCCTCGGTTTTAAAACAAACGACCCTGCTGGAGGCAAGCTGCTTTTCAtgacaaagatgaataaaTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTTCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca
>XR_005639258.1
gaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGAAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTTCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca
>XR_005639259.1
gaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGAAATCAGGCTCACTGGACTTActTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca
>XR_005639260.1
AATAACGttaccagagactatttagaaggACTTTGACGTTACGCACTCCAGCAGCACAACTAGCGACCTAGCTACCACTAACCGACTCCCTGAAGAATTTGACGACGGATGAATCTAGTAATCACACGCTCATTCCCCGCTTAAAGGTGGTGTTAGAAAATTAGTTGTTAGTAGAAGCACGAACAGACACCTGGTATGTTAGTAGAAGCACTAACAGACACTTCATATGCAATAGTTAGTTTTTTGTTGATGGAAACTTTCAATAGTGCACAAAAGAGCATAAACGCCTCAAACTGAGTTCCTACACTGCAAGTCCGCGCCCTCTGTGTAGCTTCTAGGGACGCTagttttaaattctgtgtgaGCAGACTGTCTGAGACACGGAGATTGCTGTTAACAGAACGAGTCAACTGCCCGTGCCTGCCTACTTGTGTTGCCTCGGTTTTAAAACAAACGACCCTGCTGGAGGCAAGCTGCTTTTCAtgacaaagatgaataaaTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTTCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639255.1 False 442 lncRNA 0.47 4 1550170 1551968
XR_005639256.1 False 403 lncRNA 0.48 4 1550170 1551968
XR_005639257.1 True 832 lncRNA 0.45 4 1550468 1551968
XR_005639258.1 False 439 lncRNA 0.47 4 1550170 1551968
XR_005639259.1 False 400 lncRNA 0.48 4 1550170 1551968
XR_005639260.1 False 829 lncRNA 0.45 4 1550468 1551968

Neighbor

gene id symbol gene type direction distance location
adrm1 NA coding upstream 497160 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 504931 1015388 ~ 1045239 (+)
trim101 NA coding upstream 539333 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 563899 938976 ~ 986271 (+)
ptk6b NA coding upstream 702548 825255 ~ 847622 (+)
LOC120558473 LOC103372586 coding downstream 16327 1568295 ~ 1608445 (+)
LOC120559387 NA coding downstream 861603 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 996971 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 1093924 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 1109604 2661572 ~ 2662342 (+)
LOC120559430 NA non-coding upstream 28843 1499504 ~ 1521327 (+)
G46274 NA non-coding upstream 77788 1472156 ~ 1472382 (+)
G46273 NA non-coding upstream 78025 1471913 ~ 1472145 (+)
G46259 NA non-coding upstream 181379 1367637 ~ 1368791 (+)
G46258 NA non-coding upstream 182867 1365120 ~ 1367303 (+)
G46325 NA non-coding downstream 77564 1629532 ~ 1630337 (+)
G46329 NA non-coding downstream 86427 1638395 ~ 1658925 (+)
G46339 NA non-coding downstream 126369 1678337 ~ 1678602 (+)
G46340 NA non-coding downstream 136119 1688087 ~ 1688318 (+)
LOC120559418 NA non-coding downstream 144274 1696242 ~ 1697615 (+)
G46305 NA other upstream 26939 1522685 ~ 1523231 (+)
G46238 NA other upstream 265791 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 302399 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 649874 793902 ~ 900296 (+)
G46328 NA other downstream 83980 1635948 ~ 1638170 (+)
LOC120559409 NA other downstream 653373 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 785368 2337336 ~ 2339429 (+)
G46530 NA other downstream 837978 2389946 ~ 2390512 (+)
G46574 NA other downstream 1193930 2745898 ~ 2770453 (+)

Expression


Co-expression Network