LOC120559439


Basic Information

Item Value
gene id LOC120559439
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2855557 ~ 2856180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639281.1
CTCACTGAGCGCACTGCATTTGTGTGGATTCTCCTGATTCTCGAGGTTGATAGCCAGGCACAAGTTCCCGTCCTTCACGGAGTGAACTGGGGCAGATTGACGTTTACCACTGACAAATGAGCTGCTGTGACTGTAGAGCTCCGGAAAATACTCCTCCTCCCGCATTAACTGTGCTATAGGAGTTTGTGTCCTTGCGAAGGGGACCAGTCCAGTCACTGTTTTCTACggttattttaccattttgtttcttttggttATTTGCCttggttgattattttcttgtgatttcatttaca

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0035265 organ growth biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639281.1 True 296 lncRNA 0.45 4 2855557 2856180

Neighbor

gene id symbol gene type direction distance location
LOC120558536 NA coding upstream 28845 2825257 ~ 2826712 (+)
LOC120558526 NA coding upstream 98510 2753513 ~ 2757047 (+)
LOC120559413 NA coding upstream 193215 2661572 ~ 2662342 (+)
LOC120558523 NA coding upstream 208090 2645892 ~ 2647467 (+)
LOC120558519 NA coding upstream 304833 2548939 ~ 2550724 (+)
LOC120559389 NA coding downstream 322117 3178297 ~ 3185180 (+)
LOC120559447 lactbl1,LOC103362248,LOC100707689,LOC101473793,LOC102312186 coding downstream 869781 3725961 ~ 3734391 (+)
LOC120558400 NA coding downstream 1102376 3958556 ~ 3982281 (+)
LOC120558402 LOC103357835,LOC104954328 coding downstream 1149085 4005265 ~ 4014601 (+)
mfn2 mfn2 coding downstream 1174343 4030523 ~ 4059713 (+)
LOC120559425 NA non-coding upstream 209803 2637964 ~ 2645754 (+)
G46564 NA non-coding upstream 251302 2603198 ~ 2604255 (+)
G46558 NA non-coding upstream 289242 2565724 ~ 2566315 (+)
G46523 NA non-coding upstream 508000 2344461 ~ 2347557 (+)
G46511 NA non-coding upstream 533528 2321337 ~ 2322029 (+)
LOC120559432 NA non-coding downstream 22982 2879162 ~ 2879742 (+)
LOC120559417 NA non-coding downstream 118674 2974854 ~ 2975570 (+)
LOC120559422 NA non-coding downstream 120436 2976616 ~ 2977694 (+)
LOC120559441 NA non-coding downstream 162631 3018811 ~ 3035935 (+)
G46555 LOC104948352 non-coding downstream 185293 3041473 ~ 3253531 (+)
G46574 NA other upstream 85104 2745898 ~ 2770453 (+)
G46530 NA other upstream 465045 2389946 ~ 2390512 (+)
LOC120558501 NA other upstream 516128 2337336 ~ 2339429 (+)
LOC120559409 NA other upstream 622898 2205341 ~ 2232659 (+)
G46328 NA other upstream 1217387 1635948 ~ 1638170 (+)
LOC120559392 NA other downstream 290301 3146481 ~ 3288089 (+)
LOC120559414 NA other downstream 423181 3279361 ~ 3304637 (+)
LOC120559404 NA other downstream 591924 3448104 ~ 3514758 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other downstream 986884 3843064 ~ 3865798 (+)
LOC120559501 NA other downstream 1916752 4772932 ~ 4775358 (+)

Expression


Co-expression Network