LOC120559446


Basic Information

Item Value
gene id LOC120559446
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3706605 ~ 3719155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639285.1
GAAGCAGCGGTGTCTTCCCGCTGAGCAAAGCCTTTAGTTTTGTTGGCGAAAGACCTCGGGCAGCTGAAGAAAGTGTGGCCTTTTTCGCCACACAGGGAGCACTCGCTCTCACTTGATTGCATTTCCATTGCCTCTTTGTAAATAAACAGGGGGAACGTGGACAGTGGAAGGTTCTTGGAAAGGTTGTCCAGGTTTCAGCAGTAAATATTCTACCTACTCTTTCCAAGATGACGCCTCGAAATAAATTGTCCATTATGAATTGGTCCAGTGTACAGAAGCATCCAGTTCTGTAGCAATGGAGGCAATGGGGTTTCAGAGAGGCCTGGACCATCTGATCTCCAAGGGAGTGGATGTTGGAGTCATGTCAACAGACAGATCTCCATCCATTGGAAAAATAATGAAGGACAGCTACACCAACATAAGGCATGACTTTGACCCATGGCATGTCAATAAGAATGGGAGGAGCATGGCAGCTTAGAGTACCAATGTCTTCACCCATCACTCACAGAGGAGGAGCAAACACAGAAAAATGGCTGAAAAATTATTCTCCTGCTTTCCGTGCCTTGAAGGGTATTAAAGAGAGCATTGGGAATCTGAACAAAAAAAGTTGCTAACACGATGGCTTGAGTTGCAAAACGTGAAGGTGCTTTTCTTGACAAAAGAAAGTGGTTAAACAACGCAGGACGACACACAAGGTTTTCACTAGCAAAGTTTCTCAAAGTTTCACATCACCTGTCTGGATTGTAGCCACCCTCAGACTGAGCCtatgcttcttcttcttcttcttgtttccGGCAGGCTGGATGCATCTATGGCATATTGCTACCCTTCGCTATTCTCTAAAACGCTATTCACAACTTAATTAGAAGTAATTATCTATATCTTTATATACTCCAATATGTCGCAGGTACGCCATCAGTTTCTTCAATTTGTTCCAACTGTCCAAATTCAATAAAGTGTGTAAAAACAGTTTCTCCAGTTGCACCCAGTTCCCTGAACAGTTTCTTCCTCTGACGAGAGTACTTCCTGCACTGCACTAATACATGCTTCACTGTTTCCTCGTCTCCACATTCACACTTTGCATCAGGATGTTTACTAATCAGAGCCAGCCCCCTCCTCAGCCCACAATGCCCAAACCTCAATCTGGATAAAACTACTGCATCTCTTCTCTTACATCTATAATcacatctttctttctctaccATTCTTTGTACTGAATAATAAGTTCTCCCCTTCCTTTCACAATCCCATGAATTTTGCCACATTTCTTTTACTGACCTATTCATTATTTCGGTGTAATCTGGTGACCCATACCGCACATTAATTTGAACTCTTTCCTCCTGCACTGCTTTCTTTGCCACCTCATCTGCCTCCTAATTACCCTCCACACCCATGTGCGCGGGAACCCACAGAAACCCCACCTCATACCCTGCTTTATGAATTCTATACAACACCTGCATAATTTCCACAAGCAAATCAGGCCTGGACTTAGTTTTGGTACCTTCTATTGTAATTAGGGTTGCAGCTGAATCACTCCATATGACAGAATGTTCCGGTTTGTTATATTCAACCCACCTTACTGCCCATAGAACTGCCACCAACTCTGCAGTAAATGCTGATAAATGATCTGGAATCCTACAACCGTTTTTATAACCCATTTCAGGTATACTAATACCAAAAGCCACTTTACCGCTCTCAAGATCCTTCGACCAGTCAGTATAAATTTGTAGGTGGCCTCCACACATTTGACACTGCCGGGCTTTTATCTCCTCCACTACATCTCTGACATCTTTCTTTTGCTTGTgttcaaaaaatataaatcaacaatgTGATCCGGAATCTACCACAAAGGTACATCTGAACGACATATTGgtggacatactgtacattcaaaTTCACACTACCAATTTCATCTGCCATAGATTTGAGTGTTTCTGTAAAGTTTGTTTTGACGATTCTTGCTGTTCCCATAAACTCCCAATGCTGACTCAACAGGTTTTTTGTTGGTAATTTTCCAGTCTGTCCTTTTAGTTTCATTAAATACTTCAAACCAAGTTTATGTCTTCTCATATCTAACGGCATCTCTCCTGTTTCTATTAATAGCGCCAGTATTGGAGTTGTACGAAACGCCCCACTACACACTCTAAGGGCTTTTGCTTGGACTATATCAAGTTGACTAATCACTGAAGGGGGCTGCTGACCCATAAACCATACAGCCATAATCAATAGTTGATCTTATCATTGCTCTGTATATCATCATCATAGATTCACTATCAGCCCTTAGAACGTTAATTATTTTCCCACATTTAGAGGGAACCATCTCAATATGCTTTTTCCATGTCAGTCTTTCATCTAACCACATCCCCAAGAATTTAaagttttttactttttcaatagtcgtattatatatttgtatcagCTGTGTTAGCATTTTCTTCTTATGTCCAAgtactatatattttgtttttttctgttgataTTTTAAAGCCCCAATCATTAGCCCATTCAGATTCCCTCTCCAAAGCAATTTGAATTTGGCCAAAAATATAGGAAAGGTTCCTCCCTTGCTTCCAGAGGGCCCCATCGTCTGCAGATAATGAAAACCAAAATTCTTTTCCCATTCTGCTAAACATACCATTAACTAGTATATTAAAAAGAATCGGGATTATAACACTACCTTGAGGGCTTCCATTCTCTACCCCAAGCTTCTCTGATAATTCACTTCCCACCCTTACCGGAATTGTCCTATTATTTAAAAACTTCTTAACTGAGCACATGCTTAGGTGGCCAGAGGCTTatatatgttaagcccctcccACTAGACCAAACAACTCTTAATTGCTTCAATTATCTCTCTATTAAGTTACCATTTAGACATTTCTAATTTCACTGATTCTACCATAAACAAATAACAGACCCTTGAACAAATCATTTTCCACCcaactaacacaaaaacttacacacattttcaactAGAAAATATAACCTCACCTATGACCCAGGTATATGGTATCTCCCACCATCAGCACACCTGAGTGTGACTGCTGTAGGCCCTATATGAAGCAGCACTTTGCCTTGAtaacgagccattaaaaaaataaaaaatgtattattgtattgtataatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639285.1 True 3129 lncRNA 0.40 4 3706605 3719155

Neighbor

gene id symbol gene type direction distance location
LOC120559389 NA coding upstream 521425 3178297 ~ 3185180 (+)
LOC120558536 NA coding upstream 879893 2825257 ~ 2826712 (+)
LOC120558526 NA coding upstream 949558 2753513 ~ 2757047 (+)
LOC120559413 NA coding upstream 1044263 2661572 ~ 2662342 (+)
LOC120558523 NA coding upstream 1059138 2645892 ~ 2647467 (+)
LOC120559447 lactbl1,LOC103362248,LOC100707689,LOC101473793,LOC102312186 coding downstream 6806 3725961 ~ 3734391 (+)
LOC120558400 NA coding downstream 239401 3958556 ~ 3982281 (+)
LOC120558402 LOC103357835,LOC104954328 coding downstream 286110 4005265 ~ 4014601 (+)
mfn2 mfn2 coding downstream 311368 4030523 ~ 4059713 (+)
LOC120559787 LOC103357833 coding downstream 365539 4084694 ~ 4180336 (+)
LOC120559445 NA non-coding upstream 44678 3660590 ~ 3661927 (+)
G46555 LOC104948352 non-coding upstream 453074 3041473 ~ 3253531 (+)
LOC120559441 NA non-coding upstream 670670 3018811 ~ 3035935 (+)
LOC120559422 NA non-coding upstream 728911 2976616 ~ 2977694 (+)
LOC120559417 NA non-coding upstream 731035 2974854 ~ 2975570 (+)
G46996 NA non-coding downstream 147996 3867151 ~ 3870238 (+)
G46997 NA non-coding downstream 151220 3870375 ~ 3872139 (+)
G47006 NA non-coding downstream 159637 3878792 ~ 3881000 (+)
LOC120559454 NA non-coding downstream 201423 3920578 ~ 3925865 (+)
G47045 NA non-coding downstream 215174 3934329 ~ 3935590 (+)
LOC120559404 NA other upstream 191847 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 401968 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 418516 3146481 ~ 3288089 (+)
G46574 NA other upstream 936152 2745898 ~ 2770453 (+)
G46530 NA other upstream 1316093 2389946 ~ 2390512 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other downstream 123909 3843064 ~ 3865798 (+)
LOC120559501 NA other downstream 1053777 4772932 ~ 4775358 (+)
G47444 NA other downstream 2479891 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 2978838 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 4393286 8112441 ~ 8116228 (+)

Expression


Co-expression Network