LOC120559496


Basic Information

Item Value
gene id LOC120559496
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4769280 ~ 4772306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639291.1
tgcagcctggagcgtcccATGTCATGCGGTCCCGTCACATGCGGTCCCGTCTCATGCcgaggctttccaacgGTACACATCAGTGTCTTTAAAAGAAATAGCACACCCCCGGTGACACGATGCACGGTGTGCTGTACCGACCATCATTGCCCCCTTTGCCCCATTTCCATATACAAGCCCCGGTGTAGGGCAAAGGTTTTGCAGCACATGGAGGTGCATGTAAAGAATGCCATTCAACATGAAGATTTCTTCATAACAAAATGCCACCAGGCTTGCAGGAGTGGAAGCAGTGGTCACTTCCACTGCCCTTTCTGCCTCAagaccacaataaaaaggcaggcTATACAGAGGCATTTGCCGATCTGTAGGCCACCTCTCCATGATGCCCAGTTGAATGCTgatgcagactgcagagagatGGGCATCAATTCCCAGACAGAGGAGTGCAAAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCAgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACTGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGCCAACCCTCCCTGCAGAGTGCGCTGTGCAAATTTGCCAAATGTAACCGGAAGAATCCTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACATCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAAGGAATGTGGTGTCGACTCTTGTGGTTCTAAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACCAAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCCTGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCGTGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTAAAGATGTTAGTCATCCGGTTACTAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTATGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAACAATTATTTCATTAACAATATGTCGCCTTCAGCTCACATTTTTCTGGTGCGAAACATTGTTCATCaccacaatgaaaaaaaaagagagacaaaccattgagaagatgaaaagaaatgTGAGGAATGTCAGTATCACACTGGACACACTTGGGAAGGCAGTGGCAGCTCCACAGACTTTATTGGGCACTCAGACTTCATTGGAACCCACAAGAAATCTTGATGGACCAACTCCTGAAAGGGAAACTTCCCTGTGTGACATACAGCCACAgcagccc
>XR_005639292.1
tgcagcctggagcgtcccATGTCATGCGGTCCCGTCACATGCGGTCCCGTCTCATGCcgaggctttccaacgGTACACATCAGTGTCTTTAAAAGAAATAGCACACCCCCGGTGACACGATGCACGGTGTGCTGTACCGACCATCATTGCCCCCTTTGCCCCATTTCCATATACAAGCCCCGGTGTAGGGCAAAGGTTTTGCAGCACATGGAGGTGCATGTAAAGAATGCCATTCAACATGAAGATTTCTTCATAACAAAATGCCACCAGGCTTGCAGGAGTGGAAGCAGTGGTCACTTCCACTGCCCTTTCTGCCTCAagaccacaataaaaaggcaggcTATACAGAGGCATTTGCCGATCTGTAGGCCACCTCTCCATGATGCCCAGTTGAATGCTgatgcagactgcagagagatGGGCATCAATTCCCAGACAGAGGAGTGCAAAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCAgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACTGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGCCAACCCTCCCTGCAGAGTAACCGGAAGAATCCTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACATCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAAGGAATGTGGTGTCGACTCTTGTGGTTCTAAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACCAAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCCTGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCGTGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTAAAGATGTTAGTCATCCGGTTACTAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTATGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAACAATTATTTCATTAACAATATGTCGCCTTCAGCTCACATTTTTCTGGTGCGAAACATTGTTCATCaccacaatgaaaaaaaaagagagacaaaccattgagaagatgaaaagaaatgTGAGGAATGTCAGTATCACACTGGACACACTTGGGAAGGCAGTGGCAGCTCCACAGACTTTATTGGGCACTCAGACTTCATTGGAACCCACAAGAAATCTTGATGGACCAACTCCTGAAAGGGAAACTTCCCTGTGTGACATACAGCCACAgcagccc
>XR_005639293.1
tgcagcctggagcgtcccATGTCATGCGGTCCCGTCACATGCGGTCCCGTCTCATGCcgaggctttccaacgGTACACATCAGTGTCTTTAAAAGAAATAGCACACCCCCGGTGACACGATGCACGGTGTGCTGTACCGACCATCATTGCCCCCTTTGCCCCATTTCCATATACAAGCCCCGGTGTAGGGCAAAGGTTTTGCAGCACATGGAGGTGCATGTAAAGAATGCCATTCAACATGAAGATTTCTTCATAACAAAATGCCACCAGGCTTGCAGGAGTGGAAGCAGTGGTCACTTCCACTGCCCTTTCTGCCTCAagaccacaataaaaaggcaggcTATACAGAGGCATTTGCCGATCTGTAGGCCACCTCTCCATGATGCCCAGTTGAATGCTgatgcagactgcagagagatGGGCATCAATTCCCAGACAGAGGAGTGCAAAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCAgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACTGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGCCAACCCTCCCTGCAGAGTGCGCTGTGCAAATTTGCCAAATGTAACCGGAAGAATCCTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACATCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAAGGAATGTGGTGTCGACTCTTGTGGTTCTAAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACCAAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCCTGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCGTGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTAAAGATGTTAGTCATCCGGTTACTAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTATGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAACAATTATTTCATTAACAATATGTCGCCTTCAGCTCACATTTTTCTGGTGCGAAACATTGTTCATCaccacaatgaaaaaaaaagagagacaaaccattgagaagatgaaaagaaatgTGAGGAATGTCAGTATCACACTGGACACACTTGGGAAGGCAGTGGCAGCTCCACAGACTTTATTGGGCACTCAGACTTCATTGGAACCCACAAGAAATCTTGATGGACCAACTCCTGAAAGGGAAACTTCCCTGTGTGACATACAGCCACAgcagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639291.1 True 1728 lncRNA 0.47 10 4769280 4772306
XR_005639292.1 False 1704 lncRNA 0.47 10 4769280 4772306
XR_005639293.1 False 1725 lncRNA 0.47 10 4769280 4772306

Neighbor

gene id symbol gene type direction distance location
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding upstream 182216 4431388 ~ 4587064 (+)
LOC120559099 NA coding upstream 487754 4266875 ~ 4281526 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 510709 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 588944 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 709567 4030523 ~ 4059713 (+)
LOC120558307 NA coding downstream 603997 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 974903 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1291544 6063850 ~ 6234843 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding downstream 1489717 6262023 ~ 6272680 (+)
rgs19 LOC103373111 coding downstream 1573802 6346108 ~ 6393502 (+)
LOC120559518 NA non-coding upstream 2506 4762389 ~ 4766774 (+)
LOC120558318 NA non-coding upstream 102409 4659466 ~ 4666871 (+)
LOC120558383 NA non-coding upstream 504648 4258819 ~ 4264632 (+)
G47113 NA non-coding upstream 694380 4074028 ~ 4074900 (+)
G47076 NA non-coding upstream 713317 4055674 ~ 4055963 (+)
G47276 NA non-coding downstream 5811 4778117 ~ 4778555 (+)
LOC120559638 NA non-coding downstream 85962 4858268 ~ 4858785 (+)
G47307 NA non-coding downstream 131843 4904149 ~ 4920830 (+)
G47308 NA non-coding downstream 132190 4904496 ~ 4914494 (+)
G47310 NA non-coding downstream 196623 4968929 ~ 4969299 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 903482 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 1254522 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 1464643 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 1481191 3146481 ~ 3288089 (+)
G46574 NA other upstream 1998827 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 626 4772932 ~ 4775358 (+)
G47444 NA other downstream 1426740 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 1925687 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3340135 8112441 ~ 8116228 (+)
pkig pkig other downstream 3570444 8342750 ~ 8380578 (+)

Expression


Co-expression Network